gi|57017375|ref|AAFJ00000000.1|  Campylobacter upsaliensis RM3195 , whole genome shotgun [asmbl_id: NC_000000].1773834, gc%: 34.27%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1697161..1697961)       PHAGE_Helico_phiHP33: hypothetical protein; CUP0935; phage(gi371671367)              1e-17               MDEFLIPVQEENKQENEELKALKTQNEALQNQLLQNQLLQNEALQNEAKSPFNNAYEQYLMKKYYGDEGLSLKAKQDINFKSRSINEPIKQLARINKALKASDEALKSVEEAGLRYGANKKLNNLTGGIWGIGEENAKLDNALANFANMSGQVTSRGGNNSNKSADEQQRLLGRDFASTKERVSRIAQTRKNIMDYFEQEKAGLEALGYRLDANSSFMKEYLEQKKKQEYLEKNSGAFDFNAYEKSVYEDFAKQKEQNDGLLRLKK
complement(1697961..1698887)       PHAGE_Helico_phiHP33: hypothetical protein; CUP0936; phage(gi371671366)              3e-09               MNYENYINGNYAEKIGEANKLLNEAKDLLRAENIDSLLNAKFALLSAELRELINSVSETKTGELKEHLTHYNHNELQKSYTKNKEDLIQSLALQIDFNALFVANKNEFINITKQEFSKELQRLLNENESLENAINILKEKVENTTQNANIALNQRLEGLELERLTKELLRAEITRLSKEALKENAPFIAQESAKELLRDEDFLENLVSDILNHSVLEGKIKYELAKVLESINKQALERALNHKELKKMMILQDMIIASLSLQNELKIISENMVFINDYKLIEKRKEFLENLDKENAKENAKENKFKAV
complement(1699211..1699591)       hypothetical protein; CUP0937                                                        N/A                 MQQRVKNIAYLSEVVVDLATLDATKGLEVIMLPKGASVLSVKIEVLELKQDTIQTLTLSLQKNGLKFFENAQIAKNANDKKFLTSSVHTTIDFNDVLVLKPSAAIDSGLVKVKAHFYNPSEILAEL
complement(1699716..1699832)       hypothetical protein; CUP0938                                                        N/A                 MLILNPYARVSLGENSKRCLKGNLKSLLIRQELSTLET
complement(1699938..1701065)       PHAGE_Helico_phiHP33: putative sensor protein; CUP0939; phage(gi371671358)           1e-97               MLDSLNKINLAAWRENPNVAIEIARTIENASWQKSPFAPFMGRGQDRGVRTYNVKDSNPYRPRLKAQLTGDGVRGNADFETNFDNLEILSQTVYPLIIGNSIKSPVKQYTQIEQIDFIKEATESLTDWIQDKRDRAFITALTNDLSNVVVCDKNGGKGYKDTTDVTSVIEASKKTVKGDVCNVKALRRAIFMARSGINYKNKEAFPIKPIRSNMHSVGGIEVTNYSYLILLDTYQANQLKNDPEWIAMQKVGVRGEKNNLFTGLVGLVDECPVIDMGVWTKMQVGLLNSEISDSDFISNINEQNVGGNLTPPSKYANTQAVSIGFLIGASALVMVGSDTPSFYIDESQDAGRKVVCGVDRLMAIAKANLKMLVGV
complement(1701386..1701937)       PHAGE_Helico_phiHP33: putative histidine kinase; CUP0940; phage(gi371671357)         2e-16               MDEAAQAPLNDDEARLAVLENEISGAEASLENDFASFAAEKIASDESLEEAFFEDKEEFIKQILHLQNEFLKSLQNKVDEANELRGQIGQKKAFDTIQAAADAFDAQNLGVSSDTLLDFFQKDLSPRAKANLENLEPSAFFEELYKLYTQGAKEEQSEELPQRLNASSASVESGGDSLVTQRF
complement(1701995..1702741)       PHAGE_Helico_phiHP33: hypothetical protein; CUP0941; phage(gi371671363)              2e-11               MTKRFNFWDHFDEAYTHLEKKHKSRLTDDKLVSFASELALKLVEIDFKEKENAYNYEKAEAEIKNLILQSKTQNEALQIEKLKSLVQAHAMLLSVGDNAAINKANAVVSFLNVVGNASNEKMVASYTKQVMELINQISNKDMSADYKPLLDKIKELANEGFDDGRGVKELGIICPRVKLKVNEAVEINAYTMYPNKEHYFELNGRRYEGACLFFIAERAGEYELSFKARNHKNALLSTSLKLRVVSEA
complement(1702725..1702865)       hypothetical protein; CUP0942                                                        N/A                 MESEFKAKFGKSAGFGRVVPLGFGSFSGALLRGEKNIKGQIYDKTL
1702756..1702938                   hypothetical protein; CUP0943                                                        N/A                 MFFSPRSKAPLKEPKPKGTTRPNPADLPNFALNSLSKRITKTHAMKRFDPLEKTRQGLSF
complement(1703043..1703372)       hypothetical protein; CUP0944                                                        N/A                 MDLMPPINNAERAANESGLWTKFSNYLGSDNFANFGKGMQGVGAFASIGTNIYGIFQSNKALKMQKKALANAEKQQAIENARYDKREKERDEATDMVMSGAGLLDTSRV
1703488..1704435                   PHAGE_Ostreo_2: cytosine-specific methyltransferase; CUP0945; phage(gi314055098)     3e-70               MKIGSLFAGIGGIELGFKKAGFKTAWAVELDSKACITYKANHKHKIINNDLAKVDLKSLSKIDILTAGFPCQAFSVAGYRKGFKDERGNVFFEILRYLEHFKPSIIFLENVKNLFKHDKGRTFEIIKKELQKLGYFLKYEILNTSEYGNIPQNRERIYIIGFLDFHTYESFHFPAKIKLTQKIQHLLEKGVDKSFYYTSHKYCAQLKKEMQSKETLYQWRRHYVRENKNNLCPTLTANMGTGGHNVPLVLDDDIRKLTPRECARFQGFDDSFILPSQLSNATLYKQIGNSVSVSVIANIAKELKKALKNDLRAVC
1704413..1705297                   hypothetical protein; CUP0946                                                        N/A                 MTLEQFVKENIAAFNQKPSGFKTALFNEMQIKDYLKKRFKEKCENETFKEKILKDFANLSYQKSKIIDLANKQILYKNDLLHFLERQIFLDIFKGLDLEQLKDKSLAYIKQNTDELQFKFIQNKLSKILEKALFLASMDGFKANLLQINSGIMLSNAGDSAEFLFVARAILAGFNASSVDVRSSRYDAIVDYNGTLLRIQIKGITGGLISFKDRDRGGQGIDYKHQSNQGKRITSKDCDIYAAVDKQVGICYLIPMSFADSFDDEKCAKVKLEQIKKYKENWDIIKQIASKKLP
1705381..1705650                   hypothetical protein; CUP0947                                                        N/A                 MSVKKEVPKKEALESEVLESEAKQGKKNKEIYVDLAKFLYIGDEPYHHKDEKGKNYIFAKNDVIILNEGESARYFDYKNTLFKRLSNGE
1705640..1706143                   conserved domain protein; CUP0948                                                    N/A                 MANNDLRAGSGPVNSAIGAAEAYHNGVLKQQALMNSMFDKFASFVKEQRNEKREDKADLQKEQIHALQKESMQKQNELLAKNLAHFEKDKEQERARNKAQNAAAYASAGVNNEQQKALKMQRKEKEDFDKLSKRLNPLNYQQSGNIDDTDIQNALSFSENALLPQRR
1706144..1706770                   PHAGE_Helico_phiHP33: putative transcriptional regulator protein; CUP0949; phage(gi371671368)     2e-10               MIDLKLKAKIRLHYESNFDNAKEVSRAFEINYRTLMKWIEKEKWQKGVLVKGVLKESTKNELLKKEFGTRLDMQSQKIKDSVKSKIENLKDYESLSLEEFNLELEKISDKVLTAALSAEFIHKNMIESFLYAKHELKRMSLLRKEHKADPCLIAMSEKLINMLSSIQKSLYSKDLLEHALNAKDANIDLKKLSENELKALAGEIIDIN
complement(1707009..1708400)       PHAGE_Helico_KHP40: hypothetical protein; CUP0950; phage(gi431810921)                4e-135              MKEFSNPPLKRVMLNMPPSYGKTETIARTFIPWALGNNPYRKFIYISYSDDLGRKINKQIRELMHSQFYRSIFSTPLFIQANSSEFILKQGGGLFVTTLKGAITGFHADSILIDDPIKVENMKSKKEREFVNQAFKDSILTRLQDKDSNITILMQRLGEDDLCGFLLNERHFSPEIIKEWKVLKMEALNKEKTLYNIGKFSYEREANEALFIKKHDLEGLKALKAQMGDDEFFTQYQQEPQASESGFFLLENFKIIPSFEMKEQKEYIFFDGAFAINARADNRALVVVGVENHGENSVRYVLKNCFYGVWDEMQTCEHIIETLINYPNARVYMESEGGGLILHRLLQREIVRVNENLKRQNKPLINNIIEVYPANRKISKVEKIKAMRAYYNSGALVFLNQAFGLNQIKKELLSFNPEKPFRKDDCIDALASCIAHKDTLPPAPLKMPLQKSGRSVYQSGWNI
complement(1708441..1708563)       PHAGE_Helico_KHP40: hypothetical protein; CUP0951; phage(gi431810921)                9e-05               MSDKQKQALRELALRELARRDLKTFLKLKWARFNQMTFFR
complement(1708647..1709186)       hypothetical protein; CUP0952                                                        N/A                 MTKLEKIMNYIIYSFRDEPLKLGKLKLAKILWFSDRAFMYKYSEALTGLEYIKMQYGPLPKKYEKILKELEIKGVIHIYQSNAYGNDDKKQICFHSLIEPNMSDFKAKEIQIIDEVMARLKDERAVDLSKQTHDKLWDSVNIGEIMPIEAVFWNDIESANEEDIKWAKCLLFIKILKIK
complement(1709255..1710106)       PHAGE_Haemop_SuMu: hypothetical protein; CUP0953; phage(gi418489077)                 2e-30               MLEYKTPPLAFNGNKKNMLKLYREALEDMKCYVNKDTIFYDVFGGSGLLAHETKRQFQNNKVIWNDFDNFQKRLNMLDKTEALRLKIVNIIKDKRFQKEERIKRIERQKIEKLLKEEGEFDYIQLSSWLRFGGSYAKDCEDFFRAKEFYNKIAYDKVLDKKDYLKGVIRVQKDYKELLKEAKERGNFFFILDPPYIQTDKAHYEGFFGLCEFLELIISIEMPFIFFSSAKSEILNFMDFCKEPKNLQNLQNLQNLHFKRVNLNKCIKNKDNSDFIFYKQRGLF
complement(1710429..1716515)       PHAGE_Helico_phiHP33: JHP1044 mosaic, putative crystallin beta/gamma motif-containing protein; CUP0954; phage(gi371671353)     7e-27               MLESGEEKFIYKKDGKEYELRIQDAMKEFGSRYDELNLKNDLNKAFLKALDKLKIGYEVLENAPVRIRFLKQNKPEQSKTSANNPALWKIQRDMGVRLKELKAQVKENNERYKNEYKALQKELTNTKDLFKSFEKEFNETKGTILISRAKRRKNDAEGKVETSVFLGNELALRNALDRWETYSGYSKENALEVKERLELLKSYVKRLEKHRKDIRAKREQLEQDYRQKNAPLDREISVIRYYKILRNSKGMSDTELYEPFLENTDGYLSKEAFNEGLPRVREEFQKLFNITPLKEFGTNYAEFYKDGKGAIQKLLAEKQGQVSGAFYKEGLGDIDLVWGDDSFGLKHILDKHGGEFEDIAEKLDKIIQNGEVVKRKGRDEAYNIEYKGFKVGINKGFNKQGGNKWVVTAFNDNIEKTAKTAPANDSTKGASLPLNSKQSIAQNSEKLPFEMQVLAEDKLSGDEVRHLANKIGEKTRTMAYFKDYLLKMDRDFHARAKDIIREYYKIEPFRKELENQWANVKEAYNKGEMSLKEFKFLSKYKDEGDFLNQVAQTLWHHNDELVKNRGYTINGYGQIERGKGGNYYQNLALEYDGALKSLKKWFYYIQKANKQAQRFFNKKMKTTKDIIKEAKEQGLSVKQAQKAVDENKLYKSLNESLKAGWDFFKANNKDDYNDKLFNNVIRVANDLDVRFWYQPNAKWMNGSYTYALNRIMLRSDFQTSSNAKTMLHELIHGVTSRAIYAYEDKIFRQKLSKEQIEGIEELKKLFKEVLDKNEAKAWKKAGNFKAEVELNEGANTLYGLRDEHEFLAELANPQFRSFLKEQNLFAQIIEAMAKIFSYVKEKLSGKVKSVSAKEELEGILYKIMDNYNNPHEFSTQMSEYFGSRNFVDIKRFKDYIKNNKEQFDKDNGKYPFKFFDNSKLSNAEKDAFKGKAEYEEVMDRDARIWREDDDLLALWLRSKDERIMPNYPNPLYEDERQILKNHKEQSYLKDLKNAVENYYKVNYDEFNNAFNGAFKDKHFFKAKKGDETRDKRGVFIYNASDDVKFLLALKPYFESGLYKILDENDFKRIRENIIRILKEEHLKYRNKPLNEWLAKEWVEKDVANLLEAKASPFTQKQELENKEANVHTLREQTKEFLSALVGKNITNQNDGRIASISRKNIMKMTSDKAIQKSVNNGFTPQEHFKAVQDIESLYQAAVLKETHADRKSNNPNVFIHRYTADFNGNNALITIKESLDNNSKGNKIYTLELEALELKPSAPEPQGSITMSKNTGYAEPVTPNETHKSIIPQRSINLAMEKFHYDEAKAKDLLEWHKDSSPLTKDENGLPKVFYHGTGQKEFDPLQNKDVNFEVFKTTLSNQDDDFLKGHYFSSNIKIAKTYTYNNNIYKVFLNAKNPLVIDFKGHTFNDYIDEAIDNIPKSVQENIRDFYDSIIFKNIIDDSTQNGKKHPVADTIMVFNSNQIKHINNKGSYTDTKGNITKNKPKNSEAEHKYFNEKSENIYYSNPHLGAGLVGGSLNGVEQDEEGNLSFDPAKFAMGFLGGTIGSKAVSKGIEWRANKVKKAYPNIAKDNPALMEQIAKRDLLTYAKNESANALTRFLNKNKLFDSTRGLFAGEKALLNEAYAPHKARLKEAKALESNGADEIEIWEKTGWYKDKDKKWKFEISQRGGEFKWDLLKKVGKDMLSEDRSMRLEEVLQDDALFRAYPQLKELKIRAVEIDDSVLGQYSEVKKNIMLSPDLNSMRAKRTLYHELQHAVQDIEGFAYGDKWELRKNYKLRHGEVEARNVENRLLTRKNDLKKLDKEIQKLTKEIQNEESAELGDYEKFSLALKKRDLVDMLEFKDKILSLDDEIIKKHPHKTMDTPLSETIAESTIQGEALSKELESENMDLKITKEKDFFKNLRNNAKNYLKNLKGKIVENENNGLKASISSEGINKMISVKSVDKSIKNGYTKEEHFKAVENVLNLFKISQFVRSEKANNGSVDIINYHKFNADFSINKKPSRAKITIKESYEGGNKIYSLELLELQRASK
1716639..1717352                   PHAGE_Helico_1961P: terminsae large subunit; CUP1442; phage(gi422935783)             1e-58               MGDDEFFTQYQQEPQASESGFFLLENFKIIPSFEMKEQKEYIFFDGAFAINARADNRALVVVGVENHGENSVRYVLKNCFYGVWDEMQTCEHIIETLINYPNARVYMESEGGGLILHRLLQREIVRVNENLKRQNKPLINNIIEVYPANRKISKVEKIKAMRAYYNSGALVFLNQAFGLNQIKKELLSFNPEKPFRKDDCIDALASCIAHKDTLPPAPLKMPLQKSGRSVYQSGWNI
1717414..1717563                   hypothetical protein; CUP1443                                                        N/A                 MLELLKNIGLGLFVNGNYALLSGNYSLNNIYIVLGSVILMGLSIYAKEK
1717563..1717655                   hypothetical protein; CUP1444                                                        N/A                 MYSYILSALLTICLIIAFAKAWEAYKKRGA
complement(1717963..1718589)       PHAGE_Helico_phiHP33: putative transcriptional regulator protein; CUP1445; phage(gi371671368)     2e-10               MIDLKLKAKIRLHYESNFDNAKEVSRAFEINYRTLMKWIEKEKWQKGVLVKGVLKESTKNELLKKEFGTRLDMQSQKIKDSVKSKIENLKDYESLSLEEFNLELEKISDKVLTAALSAEFIHKNMIESFLYAKHELKRMSLLRKEHKADPCLIAMSEKLINMLSSIQKSLYSKDLLEHALNAKDANIDLKKLSENELKALAGEIIDIN