gi|00000000|ref|PSYC01000020.1| Pseudoclavibacter sp. RFBG4 RFBG4_5, whole genome shotgun 255643, gc%: 67.45% CDS_POSITION BLAST_HIT EVALUE prophage_PRO_SEQ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- #### region 1 #### 48313..48325 attL N/A CCCCCACCCGCGC complement(52561..53742) PHAGE_Brocho_BL3_NC_015254: gp26; C5E10_05300; phage(gi327409418) 7.29e-30 PseudoclavibacterspRFBG4MDLEVLGQSPVGTLTPIEGYDHRYERGYNHFAFVPAPLPSELLLNGATVYEMSEADRALGNLNSRVNFLPNPRLLVRPSLMTEAKATSAIEGTFATLDEILAAEYVAPSRPTDMREILNYVQAATRGIQLIDELPICKRLVEELHGILVAGTRGDGNDRGSIRATQVFIGEENAPVEDAKFVPCPPGVQLRDGFSDWETWVNEPHKLPLLAKVALAHYQFETLHPFSDGNGRLGRLLITLQLMSAEALRYPVLNLSAWFEPRKSEYTDALMRVSISGDFNEWVQVFCRAVRARAQAASRTVDGLFKYRDSIVERAALENLRNVKTELADFVIGNPVFSIEDVRAALGVAKNTAAARVVDLERLGVVQEITKQKYGRVYFATEVARLLDEPGNR complement(54363..54674) PHAGE_Gordon_Bantam_NC_031074: hypothetical protein; C5E10_05305; phage(gi100132) 1.07e-13 PseudoclavibacterspRFBG4MANKRADLESAVAQPAASFNGDFYPTLLEKAAVLLRGIAAAHAFVDGNKRTAWYSMTTFLDLNGIQIDCDVREAADYVEAMAQSVPPFESGDIAEWLADHIEL complement(54737..55288) PHAGE_Lactoc_bIL311_NC_002670: Orf21; C5E10_05310; phage(gi13095679) 5.25e-12 PseudoclavibacterspRFBG4MTTAMTAASYLLTKSLTGDMQLQKLLYYSQAWHLAWTGRPLFDDTIEAWQKGPVVRCVWIDNKRGHIQPDKDGTGLSAYETDVINAVYETYGRHGGAALSGFTHVESPWIEAREGLDANAASRRPISRKTILKCMTRKSIHGDKLTPKPPAPQRDASDAQRFTAAADRQGAKWAETFAELRLR complement(55522..55788) PHAGE_Arthro_Molivia_NC_042001: rnaseH; C5E10_05315; phage(gi100048) 3.29e-10 PseudoclavibacterspRFBG4MTLETHGEHNERTAKLAAEQADGTLEVPGRFIPSPTTRRWLYAVAVAVVPLLVTLGAVTPDVAGHVLTIAGAVFGLAVPALAVANTPK complement(55785..56480) PHAGE_Strept_phiHau3_NC_018836: putative portal; C5E10_05320; phage(gi410490964) 1.37e-30 PseudoclavibacterspRFBG4MTDITPALATELVGELDADLAEAGRLGKIARYLRGKHDKPYMPKGAKKEYEHLADRAVTNWLPLVSETFAKGLFVDGLRLPKATSNAEAWAFWQRNGMDARQTIAHRGALEYGTSYVLVLPGDTAPVIRPLSPLKSAAWYAEDDDEYPEVAISLDGTTRDKKRLLSVYSATERVRFELASGDGAKWVEIERTDHGIGFLDARLIRVLDAAGVGDLIPAAWRGNEPTPKEPA complement(56499..58187) PHAGE_Gordon_GMA4_NC_030939: hypothetical protein; C5E10_05325; phage(gi100002) 9.84e-149 PseudoclavibacterspRFBG4MAAVVSVPLFPASQPTIGWGVIEFVESNLVQPDGDEAGEPFRLTPEQKRFLLWFYAVDPNGRFVYRRATLRRAKGWGKSPFLAAIGIAELLGPVRFAGLDADGDPFGEVHPMPWIVVAGVSETQTENTMAAIRSMLEGTEIVDDLGVDVGKTRILLPSGGKIIPITASASTQEGARPSFAILDETHHWTKANGGAELARTVRRNLAKSRDGSARAIETTNAHAPGEESVAESSYLAWRAVAEGRSKASGILYDSREAAGDIVLADDVQLRAGLIDAYGDATWIDIDRILAEVLDPDTPPEEARRFYLNQIVAAADSWVSPAEWHETRSEQIPLLATGDVLGSGKRQRHSGDTVTLGFDGSLTDDSTALVAVRVDDGAPFLLGVWEKSEGPQGAGWEVPKDQVRDAVDNAFATLDVVAFFSDVAYWETDIDAWRDEYGERLVVKTTTRHAVGWDMRGHQMDTVRGVEAVWRAIVDKTLPWRSHLLEYGPATGANAEEIMTRHVLNARRRPNRWGVSFGKESRESPKKVDVLAALVLARMARSAVLASGALKKRSRSTGRVAGF complement(58213..58620) PHAGE_Mycoba_Brujita_NC_011291: gp1; C5E10_05330; phage(gi206599545) 2.72e-12 PseudoclavibacterspRFBG4MTRGTTHAPKSEATRHRHARPAHGEKVIVRDNRTRGPRLEGEWSSETQTWYETWRKSPQSQLFEATDWQRLRLLAPLVEANFIKPSAAGLSEIRLNEERLGATVVDRMRARIAITERDPGASNAPAKKKAPRADI complement(58824..59540) hypothetical protein; C5E10_05335 N/A PseudoclavibacterspRFBG4MPVRGQRPKSGPCCRTSNGARKIEHRCWVCSTPVIKVQREAGRKTTCSTWCHAVTIVGLGHYPSRSSFELATRRRPLVTIETGQCEECELWFVRRRTGLDPSVCSVQCLRVRGLHEARAVLETKMSPFDLGWIVGALSSSGGIYFQKSASQPAGSVVIEMQTTNREHAVSFAQAIGGRVSRPIAATPTHCIEWRQPIYRVRASGHRTAALLDLAEPYFTPTLRRRVQRVLSEARFRPE complement(59720..60037) PHAGE_Strept_SF3_NC_028952: hypothetical protein; C5E10_05340; phage(gi971759878) 5.85e-26 PseudoclavibacterspRFBG4MTSPSHGWHTSTRRDELPADWQSRRVRVLRRDGYRCRAADSTGAVCGAPANQVDHIERGSDHSHDNLQSLCRWHHARKSSAEGAAARRPRLTQARAAERHPGLVH 60065..60553 hypothetical protein; C5E10_05345 N/A PseudoclavibacterspRFBG4MEIFSAALAALSVCAAIWSVVVARAANARADVANERAKEALDLQHLQDDRAREFRDVVWEATSNRVSDVGEVFTLRNTGLTTAQQVSLVVRLPGGERLFEFERVEPGESKGVVTGPEARRDEEADPLWTLTPAYRVHWSSPKGLAAEIAVDANRLFGARQAD complement(60623..60705) tRNA N/A GGAAGCGTGGCAGAGCGGCAATGGAGCGTCTTGCTACGGCGTAGCGCCTCACGGCGTCGCGGGTTCGATCCCCGCCGCTTCCG 60966..62480 hypothetical protein; C5E10_05355 N/A PseudoclavibacterspRFBG4MHGSAALVGLMDNLAVTSIWTPPARFLRWLYVLPPKARGRRWWSYAWRALVALVTVVGLALAAGFGFPFLMVGAPHLIVEGTVGAECRSGGPLDCQRAIADARQAVLLSLGGVIAIVGLIVTVRRWQLEREANVRAQSAHERETSQAARGTVVDAISLLDSDSAPKRTAAVAILREHAIVPENAKDVPMILDVLAAHVRRPTLLSKRKQTRSGRESVVSRPKNRFAASSTQAIKSALEISVLTGHRVDFEGVVLRGLVAPNSDWRFADIDGVRFEGGDLSDAVFSSENDPRRRLRGVEFLGTKLTRACFDNSEILDVKFGLAPSEEASSGLPRPRILQTIQGAGFAGAFLSSVEFKIGLNRVKFEGATLRNVIFDGQLMRSVNFDDSKLADVRFEDLLFLGSCSFVGAELRRVSAWRALPHQSDHFVLRAPDEGQFEIEEAHRSMAALPGLEGLQLVESRGRTYVECGRGESAPTQVDTRKTNPMNSTEVTASAGRGATLFDLT 62660..62959 hypothetical protein; C5E10_05360 N/A PseudoclavibacterspRFBG4MDNDVLSYFKSMTGFTGVARSQTYSLWLHSVEVTVNVFDYGEDMGNTRFAVEAFESSLPEEDRDNASDAYTVGQPASTVRDALTEANFAKLATLFAERE complement(62981..63178) hypothetical protein; C5E10_05365 N/A PseudoclavibacterspRFBG4MNAQDFTDAVVSGATVTVHITEKAPITGQLARHANPDIVVIVDPATDKPIAVVHVDDVDYLETEA complement(63175..63402) hypothetical protein; C5E10_05370 N/A PseudoclavibacterspRFBG4MARIIRLSGAPSAEHLVRADARIAEGFASRMTTLGTNLYLAAITHLLFAIVELLKPITTAPKPTRARVAKKADAA 63742..64197 hypothetical protein; C5E10_05375 N/A PseudoclavibacterspRFBG4MSLIVDEREAARLEALRVEQSRLTKDLLDLLELNLVPLENYKRENFLDTYSIPRDQRRAIERATRLLVDSGFREFVELSLDVVEGLWIPPRMGEDPDEPFPEQRRVFAQLVRETGRLTSEGGWSTELLESVRRAKEHIDVCAEDYFADRRS complement(64247..65851) PHAGE_Mycoba_Severus_NC_021307: integrase, s-int; C5E10_05380; phage(gi508179854) 3.56e-28 PseudoclavibacterspRFBG4MGVVGAGQEVARTARTARAATAPRRRAVLYSRLSVSDDTSTSIARQLRDLRALAEREDLEVVAEFVDDGVSGRTSRANATGALQFLRERRADVLVVWKFDRWSRQGMRSLADLIDTLDEIPTTEFVALQDGLRSAQPAWRIVASVLAEVARMESENTATRVRSSIQWRVEAGLWRGGQIPFGYQAAEGKEPNTRTLIPYPPEVAVIEEMASALITGLWTPNRVTEELNQRQVPTGRSAYRTARNRGHNPDGLDRGIWRPGTVMQLWTASHLIGRQVHRGELVRDDAGIPKTVWPPLVDRDTYEALRAAVRDPRLAAGTTTQANRRRSQLLSGLLFCAECGSIAYSNRASRGQRASVYTCSRRNDPTCPKPTMSLELVDAMVTERFLKDFGACQLTTLREPDAARVDRARLADVEQAIDRTTDELRFDGADLEVLLPRLAELKAQRTQALVSQHAATTEVVVTEETYAERWGVHPSIEARQGLLRLAFDRIVLSKLAPGAARKGSHPERLAYSPRVSGHAALLGGPELRGGRDHL 66025..66037 attL N/A GCCGCGCCGACGG complement(66040..66675) PHAGE_Mycoba_PegLeg_NC_021299: integrase; C5E10_05385; phage(gi508177970) 7.02e-20 PseudoclavibacterspRFBG4MDAETWQAANLVLMDPNRRTPRQNTRHLLSGLALCGICGATVHGGASRRPGQRAYRCSGSSGHISRKAEPIEQFVVATLVERLSRPDAAVLLRPDDSPDLDALRSEAAGLRSRLDSLAVDFADGALTSSQLRAATARIRSRLEEVERPLAAAIGGDMLSDLLGADDVTAAWEALSQDRQRAVIAALARVRIKPAGQGARRFDPATVGIEWR 66692..66704 attR N/A GCCGCGCCGACGG complement(66715..67377) PHAGE_Strept_Caliburn_NC_028892: serine integrase; C5E10_05390; phage(gi971753190) 6.42e-27 PseudoclavibacterspRFBG4MQEGVDRQLERCSSLISARGWTEAARYADNDTSATKARGPGTGWARMLADAETDTFDVVVAVDMDRLLRSVNDLFTLTKAGVRVLTVDGEIDLTSADGEFRALMLAAIAQFETRRKGERQRRANAYRAAQGRPAGGRRPFGFEADGMTVRDDEASAICAGYRAILAGDSLRQVARDWNAQGFHTGQPRQARTGRAGEPSSWIGSTVGAVLRNARYKGEAT 68904..68916 attR N/A CCCCCACCCGCGC #### region 2 #### complement(242471..242803) PHAGE_Mycoba_SkinnyPete_NC_041882: membrane-associated initiation of head vertex; C5E10_06195; phage(gi100034) 4.38e-05 PseudoclavibacterspRFBG4MTTNLSLIVPAEQTHDERVGERIMTLMFRSRMTQTALGNMIGMSQSALARKLRGERKWTLDDLFAASAAFGVSISTLLGDNESPQPGGPVGGLGASVVGPAGIEPTTSTV 242892..243107 PHAGE_Acidia_virus_NC_029316: transposase; C5E10_06200; phage(gi1002166849) 3.97e-05 PseudoclavibacterspRFBG4MTEQHEPDKAGDLLTPRETAERLHVHPRTLIRMAERAELDPVVLPSGHRRYRREEVERIVAPTATPVKAAS complement(243293..243517) hypothetical protein; C5E10_06205 N/A PseudoclavibacterspRFBG4MGNLRVGTEDFTIDDGSLPDVLAGIGQAAKAGVMFVWTDLLPDDTRRGFIWTTGVPLSFHLDTDYDVFDEIVMG 243742..244533 PHAGE_Gordon_Attis_NC_041883: RNA polymerase binding protein; C5E10_06210; phage(gi100043) 8.13e-49 PseudoclavibacterspRFBG4MSAVDLTLTFDELLKVSEGGREFWSARDLMPALGYGADWRNFEASITRAMCAAENQDLDSDTLFVAATEKSGGRPRQDYHLTRFAAYLVAMNGDPRKPEIAAAQAYFAVRTREAEVTRQPSPDEIVRQAFGILDSRVRELEAKVEADAPKVEYVDQCVAPGDDAITFRVAAAQLSMGEKALREELIEAGWIHRIRIGQRYSASAQRVVDVHEYRPSAAHRGKFVLRSQHNAPRHHNGQVRQTLYILAASMPAIQRRLQALALV 244728..245111 hypothetical protein; C5E10_06215 N/A PseudoclavibacterspRFBG4MSYVADPAHGLTQIAALLVFVLLLAAAFAIILGRIDARARRAVTLGLLALGRNDMADAYDLAVENKMLDEVKQQDWMTSNVGKPFELTYGAWMVPLNSTSAAYGNTRDEALEAAAKYLPAEKLAAGA 245108..245494 hypothetical protein; C5E10_06220 N/A PseudoclavibacterspRFBG4MSDKKWPEGTEPVRRVVRQLVQMSVESDERTSVYMHAPAKTRRLEVVAGHAAATIAMGILASVLADLARDAPNIANEYAARVTDRLEDGQTVHEINYEIGAAAGLDMSAEHHEANILAANAFNREMDA 245491..246495 PHAGE_Microb_Min1_NC_009603: hypothetical protein; C5E10_06225; phage(gi149882795) 5.03e-21 PseudoclavibacterspRFBG4MTATIETGDYIVVVPEGATKDEWHDARGEGVTASRVHEIHVGGRKTWQRILDEQLNGSTFRGNKHTQSGHDLEATMIEFAQTFADVAGNSALIANEANPLHRATPDGLGTLDGAPVVVEVKRHSHTWGQDDVPPAHYDQVQWQLWCASAIAGIYVWMVLDEDGQPTMDDPKYVIIPRDPARIAQLVKSADAYLAWRAAGAPEADDIPDEIDEALAAWGEAAAREKAANKEAEAAKKIVRAYAESLPDADKNGAKRMGTLGGFNYSVKRTGTRELTDEAWAAADPKGFAAYEELGEHLAEIIRQRAELRDPAVLEYGVTVITSASRFAFDKPKGL 246498..247178 PHAGE_Microb_Min1_NC_009603: hypothetical protein; C5E10_06230; phage(gi149882796) 1.32e-15 PseudoclavibacterspRFBG4MTETAKLEQNELVTLAQLQERIYPSGLYGGSKVEFSADGREWLDFLILNKGEHPAAARATVFRNGAEHPTIVAIGWHESVPEVDAEMIERWNTDPIALFGSKALRIGLIRAFRDLVGEISAPAPQKPQAPAQDAEAGTRDFAAEAAAATTVEAHAEVWNAARLARVVTTAMDREFRQQRLALKGAQTPAPVEPERPAPATAPRPAPTRRPSPASMPRVTTLRRPGA 247175..247519 PHAGE_Microb_Min1_NC_009603: hypothetical protein; C5E10_06235; phage(gi149882797) 1.60e-20 PseudoclavibacterspRFBG4MIEQYDPASGEIYDGDPMELVALDMAGLDEDAMLALFPTPVQAAGALLMAREAVRRAPTALRGARNALRTAERSHRVTLGKVTQELARDWDMALGRDVKLLISINANFRTEHRA 247516..248325 PHAGE_Rhizob_vB_RleM_PPF1_NC_025427: putative adenine-specific methyltransferase; C5E10_06240; phage(gi712912781) 3.03e-43 PseudoclavibacterspRFBG4MKPPIQYFGAKGNIAEKIVALLPEHRGYIEPFAGSLAVLLAKPASKIEVVNDLDHRLMTFWRVLRDRGPELARIAEMTPHSRAELEAAESLSGAGDLEIARQVWVLLTQGRSRTLKRTGWRFYADPNGTSASFQTYMDAYRERLLPAAERIRAVSLECRPALEIIAQYGRFEDNLLYIDPPYVHNARRGARYTHEMSDTDHRELADALKHCTATVMVSGYQSRLYDELFPDWHQVDLTAQSGNSLERSAHEVIWSNREVGNFLDLGEIA 248322..248732 hypothetical protein; C5E10_06245 N/A PseudoclavibacterspRFBG4MSAPTQSVRRNVYLRDAERCVRCAATVLLSFQHRAAVGMGGTRAKPTAEEGVTACLECNARFEGDLQAVALANGWKVPRWVQKLGRIADVPVFYAPEGRWFILAGRGRDAITSAQAKALMRDVYGLEQYDQMEAAA 249087..249764 PHAGE_Microb_Min1_NC_009603: hypothetical protein; C5E10_06250; phage(gi149882802) 1.06e-46 PseudoclavibacterspRFBG4MISASDLASPEYERVPDEAKPTAFGLWLHLDPLGRGPMDPEWIAARLYPTKDRSLAKDLVFEHLVLLLDAGFMSTYQAEGSEWICLSRPLKVDMRGVKIFTPDPPGAFPWTLMAGERGGASGRESARERARAEVRAEGAARADAWAAAERDRVRVPRRPERPLVLDAPPPFCPEHMPYGSGGPPCGPCRDARIVRHDWMETKVYEQRLTDHYEREESDDWDLSPI 249739..250068 hypothetical protein; C5E10_06255 N/A PseudoclavibacterspRFBG4MTGISARSSLRINGNRLHLTLDLPLTMYGDLTAEADRRGKGIRELLVEALMSISRPPELIRTRAESAVRRGWDDFSVAEQLEATTKQVAAWRNGIGVEPHRPGQGKGKI 250068..250355 hypothetical protein; C5E10_06260 N/A PseudoclavibacterspRFBG4MESNEPIDAAVAAVLDEIPWGEWRLTPEAQSSEFVVHVTGPDDVYPARTWLEALEVAQEANRQVVEHVEIFGPASRIRIWATPHARADATEQGVI 250355..250885 PHAGE_Microb_Min1_NC_009603: single-stranded DNA-binding protein; C5E10_06265; phage(gi149882804) 5.63e-69 PseudoclavibacterspRFBG4MAGDTIITVVGNLTADPELRYTQNGLAVANFTIASTPRVFDRQANEWKDGPALFLRASVWREFAEHVASSLSKGSRVIAQGRLKQRSYETKEGEKRTSIELEIEEIGPSLRYATAQLTRTSNGASQAGNSGGQARGFGGGQQGAQEQQRQWSAPTQGDATGWAQPDQSIDFDEPPF 251118..251486 PHAGE_Mycoba_Theia_NC_028960: hypothetical protein; C5E10_06270; phage(gi971760938) 1.88e-15 PseudoclavibacterspRFBG4MSKIKSSTALGVVGGLAVAAMIAGGIAFTVVSIQHEETHTCTVTGKDLRMPSTSDEAQSPRLYTAECGTFQIADVLFVSYESGDIYGSLVEGEAYELTTRGFRIPIMSVFPSIVEVEAVGRG 251479..252081 hypothetical protein; C5E10_06275 N/A PseudoclavibacterspRFBG4MAEQEYGQNADMLAHALSCCQGFSDAEAREIVTQFATCSRTTSQKPFDELREAQTPSTPVAPAVMRVADDFVRVLSLGQSNSDVDGVHVSVLHPDGTLEVSSMTHVEKRAELDAKGARERWMIDDEPPRLVLSHDEDATVEVSDEAVQRFVDALNALHPDDGGLTVDDDVLLMEEHEVRVQDSWTPAELLRAAVGVVLGG 252349..253215 hypothetical protein; C5E10_06280 N/A PseudoclavibacterspRFBG4MIEAEEYTRAELARKAGYRPLSPESRMRDLERISDVHEHLAALVSPTKQLSDGQPAAREVRQVPLRILPLDELNRSFSELFQWVEFWRTTLGRSEWPAPRGMVHLDDNGDPIGPRLLTTKDGGMETVRRWSLALVARLKVWWPDIVKHPAWPSFEEECLHPFVSRVVQSWPLEARAPVPQKPRECLDCGSRDVIASVYHVETALCWSCNAVYRLEKWVPIKEAAADIGKTVRTVENWISRPKPPLIALPVEHHLGKRHVELNMLRSYAALMLLLAPRAKPGSTAISQL 253289..253364 tRNA N/A ATCTTCCTGGTGTAACCGGCAACACGTCGCGCTCTGGACGCGAAGAGTCCAGGTTCGAGCCCTGGGGAAGATGCGA 253359..253670 PHAGE_Gordon_Gustav_NC_042088: hypothetical protein; C5E10_06285; phage(gi100068) 9.27e-18 PseudoclavibacterspRFBG4MRGVMAAGIPGRTTAAHRKNRAHLKKLTAEHGLACALCGIGPIDTTLDWRHRDAFAYDHKLSIKTHPELADDPTNGQPAHRLCNANKGAGDQRPGLGDPSEVW