gi|00000000|ref|QUIF01000002.1|  Ruminococcus sp. AM45-2 AM45-2.Scaf2, whole genome shotgun 232282, gc%: 39.49%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
117677..117688                     attL                                                                                 N/A                 AGCGGAATAAAA
complement(128107..128277)         PHAGE_Lactoc_bIL286_NC_002667: integrase; DW953_02235; phage(gi13095744)             7.61e-08            RuminococcusspAM452PHVCRHTYCSNMAKSGMNPKALQYLMGHSDISVTLNTYTHVNLEDAREEVARIQVV
complement(128399..129976)         PHAGE_Bacill_WBeta_NC_007734: putative site-specific recombinase; DW953_02240; phage(gi85701406)     3.42e-20            RuminococcusspAM452MTDLRKTAVYIRLSAEDDNVDGRAKKESDSVTSQRILLKSFVIDELGVAESDILEYVDDGVSGTHFKRQGFQQLQDDMKSGEIGCVVVKDFSRFGRDYLEVGFYIEYIFPLLQIRFISINDSYDSAASSGMTGGMNVALQNLIYNMYSLDLSKKISSAMQTRTKNGTRLPVNARYGYKKGKDGRLEVDPEAAKVVKMIFQMASEGTSFADITRELNRQAIATCDEQKLSRGDQVQFQRFDTIKKKHWSPTTVAAIVRDEIYIGTRIWGKTRCSMHTGHKAVLNDETEWVRLENHHTAIIDRALFEKANEMHPKKRRIIAESRTNFTLERRKKQPALLICANCGHSLLKETEHLLKCSDARTNGDPVCQSLVIRREPLEENILGLVHQYAASMLEKEKKVSSNRQCDYKEINTAELQKQSRQLTSEKMKLYDDYKDGRIDRDSYKQRAGKISVQLEEIKRKIEDAENSKKLLEQNELSDKIKLKDFLGIQKFDTEKLREIIKVIRVHSQDEIEIEWNFDDIFSEQR
complement(129973..131664)         PHAGE_Lactob_phiPYB5_NC_027982: putative integrase; DW953_02245; phage(gi937456185)     2.38e-24            RuminococcusspAM452MARKSRKNIPEVVSSATVQTEVSRPFRAGLYARISMETEETLERGTIETQVELMKNFVADTEDISVAEVYKDSDYSGTNFDRPGFVQMMEDIKHGKINCVIVKDLSRLGRNYVETSNYIERVFPFFHVRFLAVTDDFDSFREGVDLTVPLKNIINEFYSKDLAKKSSSAKKALWKKGKFTSAWEPYGYRKSEEDHHQLIIDEEAAEHLKSIFSMYMDGRNYSDIARQLNKDEVLSPTLQRKFYKTGEKPLPESKPWNNYEVKRVLQDVHCTGDSVFGKYQQSVFRENKQRNRPESEWVHVENTHEGIIDRELFQQVQSKIQEYTEAYKKKHQQNNGAIRNHNFYTGKIWCGGCGNRMTLSRERNGTFFYICGANTNHKSGGKQCKGHRVRKEYVDDDVLRLIQTHMKTVLDTEKMIQEMNAASKNQTQYLLLDKEVGKLRRELSRISKRKSDLYEDYSERLITEEEYIQFSRIYSNEIENIKSRLDTVLAAQVRYSQDYHIEEGWGNVIHTYMSKRKLTKEMADAFVDSIIIHGKYDYEIKLVYDDQFADLQKLKKEKEAQSR
complement(131666..133357)         PHAGE_Bacill_Gamma_NC_007458: site-specific recombinase; DW953_02250; phage(gi77020163)     7.89e-28            RuminococcusspAM452MYQNINKIYHAAIYVRLSKEDGDISSSAKLESNSISNQKALILDFLKDKKDIEVVSVRVDDGYSGSNFERPAFQAMLEDIRRGIVDCVVVKDLSRFGREYIDSGKYIERLFPALGVRFIAINDNYDSLKGKNQADEIIIPFKNLINDAYCRDISIKIRSNLEIKRKKGECVTPFVAFGYRKTKTDKHKLEIDPSAGSVVQDIFKMKLRGMSQDAIANRLNELGILSPFEYKISSGSHYETGFRQKEQALWSSVTVRRILENEVYIGNLVQGKRTTPNHKVKQTYVKPEDDWIRIEKNHEPLVSDRDFEIVQRLLGMDTRTSPDQKQVYLLSGIAVCADCGAPMTRKVSTVAGKKYAYYLCSTNKETKRCSSHRIPEKDLENAVLVMLKQHIQNILHLKRVLEFVGTVPFQEINMKKLQDRLEKKKQETERCKELRMMLYSDMKEGIVSKEDYVELHAAYGKRLRNAEESIRAIQKEMDSELEKADNANTWLDYFVKYQDIEELSRTVVVELIRKIRVYDKKNIEITFDFDDCYQTLLNQLPAMGVDTVIDDDNNLQVKVKEVV
complement(133466..133714)         hypothetical protein; DW953_02255                                                    N/A                 RuminococcusspAM452MTAEEYRNYLEQDFSDVDINEMTDLRMIKADRNKSLQERRDIFLNKVGNPYLVRIGNMKVKVRFANNGISMEQAFENMLLSV
complement(133695..134075)         PHAGE_Clostr_c_st_NC_007581: PemK family transcriptional regulator; DW953_02260; phage(gi80159713)     4.42e-15            RuminococcusspAM452MTIRRGDILWADLGMFPTTSVQGGVRPVIVVSNNKANTYSSVITVVPLTSRIYKKRYLPTHVFISKYDMTGIRKGSLALAEQVMSISTKCIIEKCGRVNKWSLDRVLKAVRIQMGMEGEGHDGRGI
complement(134229..134411)         hypothetical protein; DW953_02265                                                    N/A                 RuminococcusspAM452MTCVRCDTLADPEKSVTGKPMNCWSLETRVFGLWSGVCIRAGYYSLPAYAGVTIRGIGDK
complement(134652..135197)         PHAGE_Clostr_phi3626_NC_003524: putative sigma factor; DW953_02270; phage(gi20065995)     6.63e-06            RuminococcusspAM452MILNRGPPSGFETSNKISNSGGTDMYIEHPYFYEGKYYANIDGEMIEITKEVAYAMNNFYRSSKAKKVEIKNELGEVVDKMLREVPYSGQSIDGEGFMIEDFPDLNCDVEHSVLTKMEQQDIHKVIDQLNTEERMIIYSIFFENKTQTQMAEIMGISRQVLAYKLKTILNKMREMYMKEFF
complement(135471..135944)         PHAGE_Hypert_2_NC_014321: IS element Dka2 orfA; DW953_02275; phage(gi300116744)      1.08e-18            RuminococcusspAM452MDVNSLAHTKWECKYHIVFAPKYRRQVIYKQIRADVGEILGSLCRRKGIEIIEAECCPDHIHMLVRIPPKYSVSEIVGYLKGKSSLMIFERHANLKYKYGNRHFWCRGYYVDTVGKNTAKIKEYIQKQLKEDLEYDQMSLVEYIDPFTGEPVKKHNK
complement(136266..136697)         hypothetical protein; DW953_02280                                                    N/A                 RuminococcusspAM452MKKKIIALISGAVILIIAAGSIYGKSEFGHKEGEPDVVGTFSVNRDENLTVVANRKNIEDREAFARELLQMYKDDSFYSTKFSTDRGYATSLDMNIYLWKEDIEDGESVMTAEYRPVEYGKDYDVVNNPDKFQLYIDGKEVEE
complement(136702..136914)         sporulation initiation factor Spo0A; DW953_02285                                     N/A                 RuminococcusspAM452MREKTIYEKIAEKYNTTPEEVRREMQIAIDAGFDNPDPAVQEEWKKMTLKGDRPTPEEVVNYAVKKLKGK
137010..137021                     attR                                                                                 N/A                 AGCGGAATAAAA
complement(137066..137383)         PHAGE_Clostr_phiCD211_NC_029048: DNA-binding helix-turn-helix protein; DW953_02290; phage(gi981220892)     1.63e-11            RuminococcusspAM452MDLKAVGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVSADTLLIDVVAHSVTGVTNELTEKIEKLPIKEQKKIIKVIHTLLEE
137563..137769                     hypothetical protein; DW953_02295                                                    N/A                 RuminococcusspAM452MKSHKYWSLGALFCILGCIYSGIKKSMTAHKYFAYFSLLCMGMSIYSGHKLVPPKKKKITESNNSKNS
complement(137846..138217)         hypothetical protein; DW953_02300                                                    N/A                 RuminococcusspAM452MRYEDSMKGVADQIIKEQQRASKIKNNPEEFHWHDEYATLNFFRFICKNIGNLGNGEIEKMVTRLKSIDQKAVENHVNGAVWAFDYDKMFCVLMENEICRKVCEKNKYNSWMKLIGQYCVSMA
complement(138227..138799)         hypothetical protein; DW953_02305                                                    N/A                 RuminococcusspAM452MTDRDYAIKSMKEITFQMASHAQDYLEVTIERHYTDIKELMTSYQKLILENQIVLEELDMECQEKINEDMAYALSYLSIYNNQLNVPKMHREMNNLMIIYGLSDMIYRGMTLVKFYAPNGVMLSEILHSCFCSHYNKTDVEVQQELGIGRTSFYKMKKQALGYLGFYFYEIVVPQAKDKRFKPSLGVEEE
complement(139050..139289)         hypothetical protein; DW953_02310                                                    N/A                 RuminococcusspAM452MNKVYVDVVAEFRKDGQLVPIFFTWEDGRKYSIDRILKIERCASRKAGGVGMMYTCMIQGQESHLFYEVDKWFMERKTA
complement(139302..139514)         PHAGE_Entero_mEp390_NC_019721: hypothetical protein; DW953_02315; phage(gi428782707)     2.05e-09            RuminococcusspAM452MKKALTRKQEESYQCILRYTNEHGYPPTIREFGKLIGVKSTSSAFSRIKQLELNGYIRRIPASPRAIEIL
complement(139529..140776)         PHAGE_Bacill_SPbeta_NC_001884: IMPB/MUCB/SAMB family protein; DW953_02320; phage(gi9630142)     5.48e-38            RuminococcusspAM452MSERVILHSDMNCFYASVEMLHHPEFAGMPLAVGGDPEARHGIVLTANYIAKQKGVKTGMALWQAKQICPEIIFVPPRMDLYLRFSQMAREVYSEYTDKIEPYGIDEAWLDVSDSRNLKGSGMTIAREISHRIKYELGVTVSIGISWNKIYAKLGSDYKKPDAITEFNRENYKDRIWQLPASDLLYVGRQTNKKLQKLGIRTIGQLAESDEKLLESHFGKIGNVLWAFANGWDEDPVCKEGYEAPVKSIGNSTTTPRDLENDLDVWIIQIALAESVAARLRKHGFKCKTVEITVRDNRLYSFSRQIHLRQPTNITNEIVTAAFQLFKDNYKWEHPIRSLGIRAADLVLDDIPVQLDLFGNQEKKEKLEKLDRTVDEIRRRFGYFSIQRAAMYQDKVLSHLDAGTHTIHPHSYFHG

#### region 2 ####
197458..197471                     attL                                                                                 N/A                 TTTCATCACCTTTC
complement(206392..207186)         PHAGE_Bacill_BM5_NC_029069: hypothetical protein; DW953_02575; phage(gi985757818)     2.18e-23            RuminococcusspAM452MENKVTADYLDKEGCLHCGICGKRKQMKVSLMGFEHVVSCLCECEVKARQELDEKMQREEAQRLLYQRKSVGLRERRFWEWKFENDNGSNQKTLIARQYVENWTDMKRKNVGLLLMGPVGTGKSFFAGCIANALLEQGERVMMTNFSRILNEMTSYQADKNQIIQNLVDYPLLIIDDLGIERNSEFALEQVYNVIDSRYCKMLPLIVTTNLGLNEMKSTDLDTAHQRIYSRILEMCVPIYCGGEDKRKEEGTEKLVQVQNLITG
complement(207186..208004)         PHAGE_Strept_9874_NC_031023: hypothetical protein; DW953_02580; phage(gi100032)      8.59e-19            RuminococcusspAM452MADFEYFRAEESDQFSFFRIPKALFTEKEFASLSTDAKLLYGILLDRISLSKKNGWIDGDGYVYIIYTIAELQELLRMSHTTVTKLLYELDSVHGIGLIERYRQGNNRPSVIYVKNFVKRIRGKPVRYVASGTPETGNPDCKELEIRIARNWKSGTQRNRSPDCKNLDGSNTKINKTEKNHTDKSKGNTSALEEKFSLYGRFKNVVLSEAELRELMMLFPWDYQKRIDHLSVYMKSSGKEYQNHFATICLWAERDGARAGMDKYEFQEGESL
complement(208014..208892)         PHAGE_Strept_7201_NC_002185: ORF4; DW953_02585; phage(gi9634630)                     2.64e-11            RuminococcusspAM452MSKMEYMPVDCLQVPKVLFQMEKYKNLSNTAKILYSLFLDRLKFAVQNGWVDGKGDLYVIYPKSEMKKDLNTTRYGVDQAVQELVEVGNLVRIIPNNGKANHFYINDIYENEMEEESMMTLDSIMANMPMEEREIIMDKMVKASRDILETIADMGYLDEYGTPLTSMEERNYRDELGQLDVDQISCDGYEFGMDLAFGILEENEENADRVLDIQKYVNRQNKKCSKKKFMKVLETLVHAIGNDEGFIADMYACDKEARKIYLEEAMNAFNYVLDELCHGTGSAANCDFDVEE
complement(208885..209277)         hypothetical protein; DW953_02590                                                    N/A                 RuminococcusspAM452MVSVDQAYMVGHMKNADGSINNKNVVLSAACEAAELFQCMMSVNQKLEDWQRFNHTLEQHLRSVECEKIHDICQAVYGMKHPSDELEGLYLAREDEQICFLYYQVFVGMLEININSAEVLYKQKEETINE
complement(209291..209689)         PHAGE_Staphy_23MRA_NC_028775: single-stranded DNA-binding protein; DW953_02595; phage(gi971742276)     1.11e-14            RuminococcusspAM452MNTTVISGRLVRNPGYNEVENEKGLHKIAKFVLAVRRNYSDEVSFIPVKAFAKKAEFARDYLMQGTKVMVEGEIVTGNYEDKDTGKKIYTTEVYANRIEFAGAKMVDRPPFPEDAEGFLEIPEGMEEEMPFR
complement(209703..210101)         hypothetical protein; DW953_02600                                                    N/A                 RuminococcusspAM452MRERIESKHVTKEIKSQMPVIPVEIVKERGCTFCPYYLGNYEKQPRCMMKTCAWDDENERFHPVLRELIPFYKEKMEKAEEKFLAMKKIYTTLLGMFADEMKQEELEKDECYGCAYGKCGPCIGICYKSMKA
complement(210231..210542)         MFS transporter; DW953_02605                                                         N/A                 RuminococcusspAM452MTIEDVIKKSILPLAFMVFWFWMTKTIMKVSGQTDWFWWVFIAGLPFGIHKMRLILIPRGMDTTATLGMAALSVIIGALIGSIMIPVYVIRAIYVFIRYVIGK
complement(210835..211740)         PHAGE_Strept_315.4_NC_004587: hypothetical protein; DW953_02610; phage(gi28876350)     1.65e-05            RuminococcusspAM452MPSKKRVTPISLQPLDALFGTNEETTNGISEIAIGSLHPFTNHPFQVRDDKKMEELAESITQYGVLVPGIVRLRESGGYELVAGHRRKRACELAGLEKMPVIIKDLTDDEATVIMVDSNIQREELLISEKAFAYKMKYEALKRQGKRSDLTSCQVGKKLAAEEVSQNTGDSSRQILRYIHLTELVAELLELADEKKLPFNTAVELSYLRTEEQQILFQYMSNHNMVPSMKQAKELKQISKERMLTYSEIDQICMNESTEKVQVQIPAKKLKQYFPDTYTKTQMEEIIFMLLASWAEREGKE
complement(211730..212515)         PHAGE_Natria_PhiCh1_NC_004084: putative plasmid partitioning protein Soj; DW953_02615; phage(gi22091150)     1.00e-25            RuminococcusspAM452MARIISIVNQKGGTGKSACTANLAVGLAQKNMKVLIVDADPQSDVCAGFGYRDCDDSNETLTALMDAVMKDEDIPSDCYIRHQKEGIDIICSNIGLAGTEVQLVNAMSREYVLKQILYGIKDQYDAVIIDCMPSLGMITINALAASDEVLIPVEASYLPIKGLQQLLKTIGKVRKQINPKLQVGGILFTMVDAHTNDARNNMELLRNVYGSQIHIFDNYIPFSVRMKEAVREGQSIFSYDPKGKATEAYRRVTEEVLKDAI
212517..212530                     attR                                                                                 N/A                 TTTCATCACCTTTC
complement(212774..213835)         PHAGE_Lactob_phiJB_NC_022775: integrase; DW953_02620; phage(gi571797859)             1.14e-08            RuminococcusspAM452MSEKRRDHRGRILHNGEIQLSDGRYRFKYVDEMGKERCVYSWRLDHNDATPKGKRRTLSLREMEKKIQADHFEQIATNGGNMTVLELVEKYTSTKTGVRPTTVAGYGTVINLLKKDPFGKRRIDTVRISDAKCWLIHLQQVEKKSYSSIHSIRGVLRPAFQLAVDDDLIRKNSFQFQLMEVVVNDSVTREAISRAEERKFLRFVKEDPHFCRYYEGIYILFKTGLRISEFCGLTISDIDFKEHTIIIDHQLQKKSKIGYYIQETKTTSGTRKIPMTADVEECFRKIIEKRNPPKAEPMVDGKSGFLYFDKNESICYSLHWEHYFQHIIQKYNNTYKVQMPVITPHGRVIIRTS
complement(213971..214180)         transposase; DW953_02625                                                             N/A                 RuminococcusspAM452MNHTEKTIPVWEKYSLNVSEAAEYYGIGEKRLRQIAGENEGADFILEVGSHIRFKRKLFEDYLDTASTV
complement(214177..214992)         PHAGE_Lactob_c5_NC_019449: putative DnaC; DW953_02630; phage(gi418488188)            1.19e-24            RuminococcusspAM452MREEDTVCVGSDGLKYCKVCGEAKEAFFPKGGFMGMKKHSRQCACDRKVYEEEQKYFKDKEHRELVSRNTSICFDESRMEEWTFENADMSDTVMHRAKKYVDNWEEMKRNHIGCLFWGPVGTGKSFIAGCIANELLKQEVMVKMTNFNTIIDDIFPLADKTEYINALASYQLLIIDDLGVERNSEYALGIIFSVIDRRIRSGRPLIITTNLPLKEIKNETMLDKRRIYDRILEMCTPMYVGGTSKREVIASMKMEKAKTLLNTNRGEEDCE
complement(215007..215519)         PHAGE_Strept_9872_NC_031094: hypothetical protein; DW953_02635; phage(gi100030)      2.16e-14            RuminococcusspAM452MKYEYMKESEQMLQYFQFPKFLLKLRISQTAKFLYMILYDRARISRKNSWIDKYGNVYLIFPIDELSVQIDKCKSSVKTALKELDDVGLLVRRSGEFSKPNHLYVKIPSDEIGLQPVDNKAVEKIVATEPEKPPLSGRKNGCGGVGNVAPSKVTEKYKSNKYHEVNYCYG