Criteria for scoring prophage regions (as intact, questionable, or incomplete): Method 1: 1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used. Method 2: 1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered). Method 3: 1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found. 2. If the size of the region is greater than 30 Kb, the score will be increased by 10. 3. If there are at least 40 proteins in the region, the score will be increased by 10. 4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10. Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region. If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact. Totally 6 intact prophage regions have been identified. REGION REGION_LENGTH COMPLETENESS(score) SPECIFIC_KEYWORD REGION_POSITION TRNA_NUM TOTAL_PROTEIN_NUM PHAGE_HIT_PROTEIN_NUM HYPOTHETICAL_PROTEIN_NUM PHAGE+HYPO_PROTEIN_PERCENTAGE BACTERIAL_PROTEIN_NUM ATT_SITE_SHOWUP PHAGE_SPECIES_NUM MOST_COMMON_PHAGE_NAME(hit_genes_count) FIRST_MOST_COMMON_PHAGE_NUM FIRST_MOST_COMMON_PHAGE_PERCENTAGE GC_PERCENTAGE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 1 7.1Kb incomplete(30) virion,transposase 576843-584039 0 10 6 3 90% 1 no 6 PHAGE_Mycoba_RhynO_NC_023609(1),PHAGE_Erwini_ENT90_NC_019932(1),PHAGE_Mycoba_Piro94_NC_028794(1),PHAGE_Salmon_RE_2010_NC_019488(1),PHAGE_Bacill_SP_15_NC_031245(1),PHAGE_Staphy_SA13_NC_021863(1),PHAGE_Strept_SM1_NC_004996(1),PHAGE_Strept_phiARI0923_NC_030946(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Pseudo_MP1412_NC_018282(1),PHAGE_Mycoba_Larenn_NC_028877(1),PHAGE_Mycoba_Equemioh13_NC_028852(1),PHAGE_Staphy_Sap26_NC_014460(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Burkho_phi1026b_NC_005284(1),PHAGE_Mycoba_Turbido_NC_023707(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Entero_PsP3_NC_005340(1) 1 10% 55.52% 2 43.7Kb intact(150) tail,head,capsid,portal,terminase,lysin,integrase 903076-946811 1 61 53 4 93.4% 4 yes 31 PHAGE_Entero_mEp390_NC_019721(12),PHAGE_Salmon_118970_sal3_NC_031940(10),PHAGE_Entero_HK544_NC_019767(9),PHAGE_Entero_mEp235_NC_019708(6),PHAGE_Entero_HK446_NC_019714(6),PHAGE_Entero_SfV_NC_003444(5),PHAGE_Escher_HK75_NC_016160(5),PHAGE_Entero_mEp234_NC_019715(4),PHAGE_Escher_HK639_NC_016158(4),PHAGE_Entero_HK106_NC_019768(4),PHAGE_Pseudo_phi297_NC_016762(4),PHAGE_Entero_mEpX1_NC_019709(3),PHAGE_Burkho_KS9_NC_013055(3),PHAGE_Entero_HK97_NC_002167(3),PHAGE_Entero_mEp460_NC_019716(3),PHAGE_Shigel_SfII_NC_021857(3),PHAGE_Pseudo_PMG1_NC_016765(3),PHAGE_Shigel_SfIV_NC_022749(3),PHAGE_Entero_BP_4795_NC_004813(3),PHAGE_Stx2_c_86_NC_008464(3),PHAGE_Salmon_ST64B_NC_004313(2),PHAGE_Escher_PA2_NC_028449(2),PHAGE_Entero_HK629_NC_019711(2),PHAGE_Cronob_phiES15_NC_018454(2),PHAGE_Bacill_phIS3501_NC_019502(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Burkho_phi6442_NC_009235(2),PHAGE_Entero_YYZ_2008_NC_011356(2),PHAGE_Cronob_ENT39118_NC_019934(2),PHAGE_Entero_cdtI_NC_009514(2),PHAGE_Burkho_phiE125_NC_003309(2),PHAGE_Burkho_phi1026b_NC_005284(2),PHAGE_Entero_VT2_Sakai_NC_000902(2),PHAGE_Salmon_SPN1S_NC_016761(2),PHAGE_Salmon_SJ46_NC_031129(2),PHAGE_Stx2_vB_EcoP_24B_NC_027984(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(2),PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Entero_phiP27_NC_003356(2),PHAGE_Pseudo_PAJU2_NC_011373(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Bacill_phi105_NC_004167(2),PHAGE_Rhizob_16_3_NC_011103(2),PHAGE_Entero_SfI_NC_027339(2),PHAGE_Entero_UAB_Phi20_NC_031019(2),PHAGE_Pseudo_PS_1_NC_029066(2),PHAGE_Entero_P22_NC_002371(1),PHAGE_Acinet_133_NC_015250(1),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Klebsi_PKP126_NC_031053(1),PHAGE_Mycoba_BigNuz_NC_023692(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019(1),PHAGE_Mycoba_Phayonce_NC_028796(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Entero_IME10_NC_019501(1),PHAGE_Geobac_E2_NC_009552(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Bacill_Bobb_NC_024792(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Erwini_ENT90_NC_019932(1),PHAGE_Bacill_BtCS33_NC_018085(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Ralsto_RSY1_NC_025115(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Lactob_J_1_NC_022756(1),PHAGE_Burkho_KL1_NC_018278(1),PHAGE_Bacill_BM5_NC_029069(1),PHAGE_Bacill_Bp8p_C_NC_029121(1),PHAGE_Lactob_LLKu_NC_022989(1),PHAGE_Pseudo_D3_NC_002484(1),PHAGE_Lactob_PL_1_NC_022757(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Pseudo_AF_NC_019923(1),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Entero_HK022_NC_002166(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Acinet_Bphi_B1251_NC_019541(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Staphy_StB20_NC_019915(1),PHAGE_Pseudo_phiCTX_NC_003278(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Entero_HK633_NC_019719(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Vibrio_pYD38_A_NC_021534(1),PHAGE_Salmon_RE_2010_NC_019488(1),PHAGE_Entero_933W_NC_000924(1),PHAGE_Pseudo_PaMx42_NC_028879(1),PHAGE_Acinet_vB_AbaP_PD_6A3_NC_028684(1),PHAGE_Lactob_A2_NC_004112(1),PHAGE_Altero_vB_AmaP_AD45_P1_NC_021532(1),PHAGE_Burkho_Bcep176_NC_007497(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Salmon_Fels_2_NC_010463(1),PHAGE_Salmon_epsilon15_NC_004775(1) 12 19.67% 50.51% 3 38.3Kb intact(150) tail,plate,lysin,head,terminase,capsid,portal,integrase 3738939-3777277 0 43 33 7 93% 3 yes 10 PHAGE_Salmon_SEN4_NC_029015(21),PHAGE_Salmon_SEN5_NC_028701(21),PHAGE_Entero_P88_NC_026014(19),PHAGE_Salmon_Fels_2_NC_010463(7),PHAGE_Entero_P2_NC_001895(6),PHAGE_Erwini_ENT90_NC_019932(5),PHAGE_Salmon_RE_2010_NC_019488(5),PHAGE_Salmon_SP_004_NC_021774(4),PHAGE_Pseudo_phiCTX_NC_003278(4),PHAGE_Escher_pro147_NC_028896(4),PHAGE_Entero_186_NC_001317(4),PHAGE_Ralsto_RSA1_NC_009382(3),PHAGE_Yersin_L_413C_NC_004745(3),PHAGE_Ralsto_RSY1_NC_025115(3),PHAGE_Escher_pro483_NC_028943(3),PHAGE_Entero_WPhi_NC_005056(2),PHAGE_Entero_PsP3_NC_005340(2),PHAGE_Entero_fiAA91_ss_NC_022750(2),PHAGE_Burkho_KL3_NC_015266(2),PHAGE_Salmon_118970_sal3_NC_031940(2),PHAGE_Bacter_APSE_2_NC_011551(1),PHAGE_Escher_vB_EcoM_ep3_NC_025430(1),PHAGE_Entero_JSE_NC_012740(1),PHAGE_Erwini_phiEaH2_NC_019929(1),PHAGE_Entero_RB49_NC_005066(1),PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995(1),PHAGE_Bacill_SP_15_NC_031245(1),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Endosy_APSE_1_NC_000935(1),PHAGE_Pasteu_F108_NC_008193(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Entero_Phi1_NC_009821(1),PHAGE_Entero_GEC_3S_NC_025425(1),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(1),PHAGE_Brevib_Sundance_NC_028749(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Clostr_phiCD481_1_NC_028951(1),PHAGE_Salmon_SEN1_NC_029003(1),PHAGE_Mannhe_vB_MhM_587AP1_NC_028898(1),PHAGE_Pseudo_PPpW_3_NC_023006(1),PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(1),PHAGE_Burkho_ST79_NC_021343(1),PHAGE_Burkho_KS5_NC_015265(1),PHAGE_Clostr_phiCT453A_NC_028991(1),PHAGE_Erwini_vB_EamM_Kwan_NC_031010(1),PHAGE_Mannhe_phiMHaA1_NC_008201(1),PHAGE_Vibrio_VP58.5_NC_027981(1),PHAGE_Yersin_PY54_NC_005069(1),PHAGE_Yersin_phiR1_37_NC_016163(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Entero_Arya_NC_031048(1) 21 48.83% 50.06% 4 48.6Kb intact(130) tail,capsid,head,portal,terminase,lysin,recombinase,integrase 4308167-4356842 0 65 53 9 95.3% 3 yes 33 PHAGE_Entero_mEp237_NC_019704(13),PHAGE_Phage_Gifsy_1_NC_010392(11),PHAGE_Phage_Gifsy_2_NC_010393(11),PHAGE_Salmon_SPN3UB_NC_019545(10),PHAGE_Entero_HK225_NC_019717(8),PHAGE_Acinet_vB_AbaS_TRS1_NC_031098(7),PHAGE_Escher_HK639_NC_016158(6),PHAGE_Acinet_Bphi_B1251_NC_019541(6),PHAGE_Entero_phi80_NC_021190(5),PHAGE_Pseudo_phiPSA1_NC_024365(5),PHAGE_Salmon_SEN34_NC_028699(5),PHAGE_Pseudo_PS_1_NC_029066(5),PHAGE_Pseudo_YMC11/02/R656_NC_028657(4),PHAGE_Pseudo_PAJU2_NC_011373(4),PHAGE_Cronob_phiES15_NC_018454(3),PHAGE_Burkho_KL1_NC_018278(3),PHAGE_Pseudo_phi297_NC_016762(3),PHAGE_Entero_P22_NC_002371(2),PHAGE_Escher_PA2_NC_028449(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019(2),PHAGE_Salmon_SSU5_NC_018843(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Entero_mEp213_NC_019720(2),PHAGE_Entero_YYZ_2008_NC_011356(2),PHAGE_Pseudo_D3_NC_002484(2),PHAGE_Entero_mEp460_NC_019716(2),PHAGE_Salmon_ST64T_NC_004348(2),PHAGE_Pseudo_PMG1_NC_016765(2),PHAGE_Shigel_Ss_VASD_NC_028685(2),PHAGE_Entero_lambda_NC_001416(2),PHAGE_Entero_mEp390_NC_019721(2),PHAGE_Entero_VT2phi_272_NC_028656(2),PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381(2),PHAGE_Entero_HK140_NC_019710(2),PHAGE_Pectob_ZF40_NC_019522(2),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(2),PHAGE_Salmon_ST160_NC_014900(2),PHAGE_Salmon_SEN22_NC_028696(2),PHAGE_Caulob_karma_NC_019410(1),PHAGE_Burkho_Bcep22_NC_005262(1),PHAGE_Gordon_Nymphadora_NC_031061(1),PHAGE_Rhodof_P26218_NC_029061(1),PHAGE_Burkho_BcepC6B_NC_005887(1),PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956(1),PHAGE_Erwini_vB_EamP_S6_NC_019514(1),PHAGE_Pseudo_PA1phi_NC_023700(1),PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864(1),PHAGE_Paraco_vB_PmaS_IMEP1_NC_026608(1),PHAGE_Caulob_magneto_NC_019407(1),PHAGE_Xantho_Xp15_NC_007024(1),PHAGE_Salmon_SEN4_NC_029015(1),PHAGE_Cyanop_KBS_S_2A_NC_020854(1),PHAGE_Erwini_PEp14_NC_016767(1),PHAGE_Vibrio_pYD38_B_NC_021561(1),PHAGE_Pseudo_MP48_NC_024782(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Caulob_swift_NC_019411(1),PHAGE_Burkho_BcepMigl_NC_019917(1),PHAGE_Entero_phiFL1A_NC_013646(1),PHAGE_Caulob_phiCbK_NC_019405(1),PHAGE_Escher_phage_NC_004913(1),PHAGE_Entero_ES18_NC_006949(1),PHAGE_Entero_Tyrion_NC_031077(1),PHAGE_Pseudo_H70_NC_027384(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Halomo_phiHAP_1_NC_010342(1),PHAGE_Pseudo_YuA_NC_010116(1),PHAGE_Entero_BP_4795_NC_004813(1),PHAGE_Pseudo_MP29_NC_011613(1),PHAGE_Vibrio_VpKK5_NC_026610(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Rhizob_RHEph10_NC_034248(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Bacill_G_NC_023719(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Erwini_vB_EamM_Huxley_NC_031127(1),PHAGE_Rhodob_RcTitan_NC_029097(1),PHAGE_Pseudo_F116_NC_006552(1),PHAGE_Pseudo_73_NC_007806(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Liston_phiHSIC_NC_006953(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Salmon_SEN5_NC_028701(1),PHAGE_Entero_SfI_NC_027339(1),PHAGE_Escher_TL_2011c_NC_019442(1),PHAGE_Plankt_PaV_LD_NC_016564(1),PHAGE_Entero_phiFL2A_NC_013643(1),PHAGE_Entero_Arya_NC_031048(1),PHAGE_Entero_UAB_Phi20_NC_031019(1),PHAGE_Salmon_epsilon34_NC_011976(1),PHAGE_Pseudo_M6_NC_007809(1) 13 20% 52.88% 5 12Kb incomplete(40) integrase,tail 4495692-4507704 0 12 6 3 75% 3 yes 5 PHAGE_Entero_P4_NC_001609(2),PHAGE_Acinet_vB_AbaS_TRS1_NC_031098(1),PHAGE_Strept_858_NC_010353(1),PHAGE_Strept_YMC_2011_NC_018285(1),PHAGE_Pseudo_PAJU2_NC_011373(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Rueger_DSS3_P1_NC_025428(1),PHAGE_Erwini_phiEt88_NC_015295(1),PHAGE_Stenot_S1_NC_011589(1),PHAGE_Entero_SfV_NC_003444(1),PHAGE_Salmon_118970_sal3_NC_031940(1),PHAGE_Salmon_9NA_NC_025443(1),PHAGE_Acinet_Bphi_B1251_NC_019541(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Strept_TP_778L_NC_022776(1),PHAGE_Lactob_A2_NC_004112(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Burkho_KL3_NC_015266(1) 2 16.66% 49.86% 6 40.2Kb intact(114) tail,capsid,head,portal,terminase 5008837-5049097 0 55 52 2 98.1% 1 no 4 PHAGE_Klebsi_phiKO2_NC_005857(49),PHAGE_Yersin_PY54_NC_005069(24),PHAGE_Entero_N15_NC_001901(18),PHAGE_Entero_phiP27_NC_003356(4),PHAGE_Entero_HK446_NC_019714(3),PHAGE_Salmon_ST64B_NC_004313(3),PHAGE_Entero_HK022_NC_002166(3),PHAGE_Entero_SfV_NC_003444(3),PHAGE_Vibrio_VP882_NC_009016(3),PHAGE_Entero_mEp237_NC_019704(3),PHAGE_Burkho_phi6442_NC_009235(3),PHAGE_Salmon_118970_sal3_NC_031940(3),PHAGE_Burkho_phiE125_NC_003309(3),PHAGE_Entero_Tyrion_NC_031077(2),PHAGE_Halomo_phiHAP_1_NC_010342(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Entero_mEp234_NC_019715(2),PHAGE_Entero_HK140_NC_019710(2),PHAGE_Pseudo_YMC11/02/R656_NC_028657(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Entero_HK633_NC_019719(2),PHAGE_Shigel_POCJ13_NC_025434(2),PHAGE_Vibrio_vB_VpaM_MAR_NC_019722(2),PHAGE_Shigel_SfII_NC_021857(2),PHAGE_Shigel_Stx_NC_029120(2),PHAGE_Entero_P4_NC_001609(1),PHAGE_Gordon_Nymphadora_NC_031061(1),PHAGE_Aeromo_vB_AsaM_56_NC_019527(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Pseudo_PMG1_NC_016765(1),PHAGE_Shewan_1/41_NC_025458(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Shewan_1/44_NC_025463(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Vibrio_VBM1_NC_020850(1),PHAGE_Entero_HK544_NC_019767(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Salmon_Fels_1_NC_010391(1),PHAGE_Pectob_ZF40_NC_019522(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Bacill_phIS3501_NC_019502(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Escher_HK75_NC_016160(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Pseudo_vB_PsyM_KIL1_NC_030934(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Pseudo_PAJU2_NC_011373(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Gordon_Kita_NC_031233(1),PHAGE_Entero_186_NC_001317(1),PHAGE_Pseudo_D3_NC_002484(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Entero_cdtI_NC_009514(1),PHAGE_Salmon_epsilon15_NC_004775(1) 49 89.09% 51.69% 7 22.2Kb intact(100) terminase,head,capsid,tail 5256793-5279081 0 34 30 1 91.1% 3 no 15 PHAGE_Entero_HK140_NC_019710(12),PHAGE_Entero_HK022_NC_002166(10),PHAGE_Entero_mEp235_NC_019708(9),PHAGE_Pseudo_PAJU2_NC_011373(8),PHAGE_Pseudo_PMG1_NC_016765(7),PHAGE_Entero_mEp390_NC_019721(7),PHAGE_Entero_mEpX2_NC_019705(7),PHAGE_Salmon_118970_sal3_NC_031940(6),PHAGE_Escher_HK639_NC_016158(4),PHAGE_Pseudo_phi297_NC_016762(4),PHAGE_Escher_HK75_NC_016160(4),PHAGE_Pseudo_D3_NC_002484(4),PHAGE_Entero_mEpX1_NC_019709(3),PHAGE_Cronob_ENT39118_NC_019934(3),PHAGE_Entero_HK446_NC_019714(2),PHAGE_Entero_HK544_NC_019767(2),PHAGE_Pseudo_YMC11/07/P54_PAE_BP_NC_030909(2),PHAGE_Pseudo_JBD44_NC_030929(2),PHAGE_Ralsto_RSA1_NC_009382(1),PHAGE_Salmon_ST64B_NC_004313(1),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Xantho_Xp10_NC_004902(1),PHAGE_Xantho_phiL7_NC_012742(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Entero_HK106_NC_019768(1),PHAGE_Stenot_vB_SmaS_DLP_2_NC_029019(1),PHAGE_Entero_mEp234_NC_019715(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381(1),PHAGE_Entero_phiP27_NC_003356(1),PHAGE_Brucel_BiPBO1_NC_031264(1),PHAGE_Rhodob_RcapNL_NC_020489(1),PHAGE_Entero_N15_NC_001901(1),PHAGE_Entero_HK97_NC_002167(1),PHAGE_Ralsto_RSY1_NC_025115(1),PHAGE_Xantho_OP1_NC_007709(1),PHAGE_Acinet_vB_AbaP_PD_6A3_NC_028684(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Burkho_KL1_NC_018278(1),PHAGE_Rhizob_16_3_NC_011103(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Pseudo_PS_1_NC_029066(1) 10 35.29% 52.29% 8 11.3Kb incomplete(40) transposase,integrase 5352900-5364256 0 12 8 2 83.3% 2 yes 7 PHAGE_Entero_N15_NC_001901(2),PHAGE_Entero_P1_NC_005856(2),PHAGE_Entero_933W_NC_000924(2),PHAGE_Klebsi_phiKO2_NC_005857(2),PHAGE_Yersin_PY54_NC_005069(2),PHAGE_Salmon_SJ46_NC_031129(2),PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1),PHAGE_Mycoba_Panchino_NC_031281(1),PHAGE_Mycoba_Charlie_NC_023729(1),PHAGE_Entero_Min27_NC_010237(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Mycoba_Squirty_NC_026588(1),PHAGE_Burkho_KS14_NC_015273(1),PHAGE_Stx2_II_NC_004914(1),PHAGE_Brevib_Jenst_NC_028805(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Brevib_Sundance_NC_028749(1),PHAGE_Entero_VT2_Sakai_NC_000902(1) 2 16.66% 47.41% 9 76Kb intact(150) transposase,lysin,terminase,head,capsid,coat,tail,integrase,recombinase 5376207-5452249 4 77 50 9 76.6% 18 yes 27 PHAGE_Cronob_ENT47670_NC_019927(13),PHAGE_Salmon_64795_sal3_NC_031918(13),PHAGE_Salmon_II_E1_NC_010495(10),PHAGE_Salmon_IME207_NC_031924(10),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(6),PHAGE_Mannhe_vB_MhS_535AP2_NC_028853(6),PHAGE_Salmon_SJ46_NC_031129(6),PHAGE_Vibrio_pYD38_A_NC_021534(5),PHAGE_Entero_P1_NC_005856(4),PHAGE_Salmon_SPN3UB_NC_019545(3),PHAGE_Klebsi_phiKO2_NC_005857(3),PHAGE_Entero_N15_NC_001901(2),PHAGE_Entero_ES18_NC_006949(2),PHAGE_Escher_HK639_NC_016158(2),PHAGE_Salmon_118970_sal4_NC_030919(2),PHAGE_Yersin_PY54_NC_005069(2),PHAGE_Entero_P22_NC_002371(1),PHAGE_Ralsto_RSF1_NC_028899(1),PHAGE_Staphy_IME_SA4_NC_029025(1),PHAGE_Burkho_BcepGomr_NC_009447(1),PHAGE_Staphy_phiPV83_NC_002486(1),PHAGE_Mycoba_Malithi_NC_026605(1),PHAGE_Vibrio_PWH3a_P1_NC_020863(1),PHAGE_Klebsi_vB_KpnM_KpV477_NC_031087(1),PHAGE_Paraco_vB_PmaS_IMEP1_NC_026608(1),PHAGE_Pseudo_MD8_NC_031091(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Brevib_Sundance_NC_028749(1),PHAGE_Geobac_E2_NC_009552(1),PHAGE_Salmon_SSU5_NC_018843(1),PHAGE_Entero_HK225_NC_019717(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Bacill_Bobb_NC_024792(1),PHAGE_Deep_s_D6E_NC_019544(1),PHAGE_Entero_Sf101_NC_027398(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Burkho_KL1_NC_018278(1),PHAGE_Bacill_Bp8p_C_NC_029121(1),PHAGE_Brevib_Jenst_NC_028805(1),PHAGE_Escher_Tls_NC_009540(1),PHAGE_Ralsto_RSL2_NC_028950(1),PHAGE_Xylell_Xfas53_NC_013599(1),PHAGE_Clostr_vB_CpeS_CP51_NC_021325(1),PHAGE_Mycoba_Shipwreck_NC_031261(1),PHAGE_Acinet_Acj61_NC_014661(1),PHAGE_Salmon_SE1_NC_011802(1),PHAGE_Stx2_vB_EcoP_24B_NC_027984(1),PHAGE_Mycoba_Charlie_NC_023729(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Brocho_BL3_NC_015254(1),PHAGE_Staphy_StauST398_4_NC_023499(1),PHAGE_Vibrio_VvAW1_NC_020488(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Acinet_ZZ1_NC_018087(1),PHAGE_Acinet_Acj9_NC_014663(1),PHAGE_Salmon_vB_SemP_Emek_NC_018275(1),PHAGE_Achrom_phiAxp_1_NC_029033(1),PHAGE_Klebsi_Sushi_NC_028774(1),PHAGE_Acinet_vB_AbaP_PD_6A3_NC_028684(1),PHAGE_Burkho_KS14_NC_015273(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Entero_ST104_NC_005841(1),PHAGE_Mycoba_Butters_NC_021061(1),PHAGE_Salmon_SEN22_NC_028696(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Escher_P13374_NC_018846(1),PHAGE_Clostr_phiCT19406A_NC_030950(1),PHAGE_Bacill_phiAGATE_NC_020081(1),PHAGE_Pseudo_PS_1_NC_029066(1) 13 16.88% 54.11% 10 45.9Kb questionable(90) transposase,integrase,protease 5468761-5514729 0 54 40 8 88.8% 6 yes 32 PHAGE_Salmon_SJ46_NC_031129(6),PHAGE_Entero_P1_NC_005856(6),PHAGE_Entero_VT2_Sakai_NC_000902(5),PHAGE_Salmon_SEN34_NC_028699(5),PHAGE_Entero_SfI_NC_027339(5),PHAGE_Stx2_II_NC_004914(4),PHAGE_Entero_BP_4795_NC_004813(4),PHAGE_Entero_HK140_NC_019710(4),PHAGE_Entero_933W_NC_000924(4),PHAGE_Entero_phi80_NC_021190(3),PHAGE_Phage_Gifsy_2_NC_010393(3),PHAGE_Stx2_vB_EcoP_24B_NC_027984(3),PHAGE_Entero_lambda_NC_001416(3),PHAGE_Entero_phiP27_NC_003356(3),PHAGE_Shigel_Sf6_NC_005344(2),PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995(2),PHAGE_Salmon_103203_sal5_NC_031946(2),PHAGE_Entero_mEpX1_NC_019709(2),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Shigel_POCJ13_NC_025434(2),PHAGE_Entero_Sf101_NC_027398(2),PHAGE_Escher_phage_NC_004913(2),PHAGE_Erwini_phiEt88_NC_015295(2),PHAGE_Stx2_c_1717_NC_011357(2),PHAGE_Entero_HK633_NC_019719(2),PHAGE_Stx2_c_86_NC_008464(2),PHAGE_Escher_P13374_NC_018846(2),PHAGE_Shigel_Stx_NC_029120(2),PHAGE_Escher_vB_EcoM_ep3_NC_025430(1),PHAGE_Mannhe_vB_MhS_587AP2_NC_028743(1),PHAGE_Klebsi_vB_KpnM_KB57_NC_028659(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Escher_TL_2011b_NC_019445(1),PHAGE_Burkho_BcepIL02_NC_012743(1),PHAGE_Entero_IME10_NC_019501(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Paenib_Tripp_NC_028930(1),PHAGE_Salmon_II_E1_NC_010495(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Gordon_Bantam_NC_031074(1),PHAGE_Entero_mEp213_NC_019720(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Salmon_SPN9CC_NC_017985(1),PHAGE_Burkho_phi6442_NC_009235(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Pseudo_D3_NC_002484(1),PHAGE_Bacill_BMBtpLA_NC_028748(1),PHAGE_Cronob_ENT39118_NC_019934(1),PHAGE_Entero_mEp460_NC_019716(1),PHAGE_Acinet_YMC11/12/R2315_NC_028855(1),PHAGE_Burkho_DC1_NC_018452(1),PHAGE_Shigel_SfII_NC_021857(1),PHAGE_Cronob_ENT47670_NC_019927(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Salmon_64795_sal3_NC_031918(1),PHAGE_Salmon_SPN1S_NC_016761(1),PHAGE_Vibrio_X29_NC_024369(1),PHAGE_Lactob_Lj771_NC_010179(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Clostr_phiCD211_NC_029048(1),PHAGE_Escher_HK639_NC_016158(1),PHAGE_Entero_HK446_NC_019714(1),PHAGE_Serrat_Eta_NC_021563(1),PHAGE_Pseudo_PMG1_NC_016765(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Azospi_Cd_NC_010355(1),PHAGE_Shigel_Ss_VASD_NC_028685(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Entero_mEp390_NC_019721(1),PHAGE_Salmon_7_11_NC_015938(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Acinet_Bphi_B1251_NC_019541(1),PHAGE_Salmon_vB_SosS_Oslo_NC_018279(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Shewan_3/49_NC_025466(1),PHAGE_Acinet_YMC_13_01_C62_NC_024785(1),PHAGE_Staphy_MCE_2014_NC_025416(1),PHAGE_Vibrio_pYD38_A_NC_021534(1),PHAGE_Ralsto_RSK1_NC_022915(1),PHAGE_Salmon_g341c_NC_013059(1),PHAGE_Serrat_phiMAM1_NC_020083(1),PHAGE_Edward_MSW_3_NC_020082(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Salmon_ST160_NC_014900(1),PHAGE_Entero_mEpX2_NC_019705(1),PHAGE_Entero_HK630_NC_019723(1),PHAGE_Salmon_epsilon34_NC_011976(1) 5 11.11% 51.75% 11 8.2Kb incomplete(10) NA 5565335-5573629 0 18 15 2 94.4% 1 no 10 PHAGE_Salmon_SEN34_NC_028699(4),PHAGE_Entero_phi80_NC_021190(3),PHAGE_Salmon_SPN3UB_NC_019545(3),PHAGE_Entero_HK225_NC_019717(3),PHAGE_Phage_Gifsy_2_NC_010393(3),PHAGE_Entero_933W_NC_000924(3),PHAGE_Escher_P13374_NC_018846(3),PHAGE_Escher_HK639_NC_016158(2),PHAGE_Entero_Min27_NC_010237(2),PHAGE_Shigel_Ss_VASD_NC_028685(2),PHAGE_Phage_Gifsy_1_NC_010392(2),PHAGE_Entero_mEp237_NC_019704(2),PHAGE_Entero_HK633_NC_019719(2),PHAGE_Stx2_II_NC_004914(2),PHAGE_Entero_VT2_Sakai_NC_000902(2),PHAGE_Salisa_1_NC_017983(1),PHAGE_Salmon_SP_076_NC_021782(1),PHAGE_Salmon_103203_sal5_NC_031946(1),PHAGE_Cellul_phi4:1_NC_021788(1),PHAGE_Vibrio_12A4_NC_021068(1),PHAGE_Escher_PA2_NC_028449(1),PHAGE_Entero_mEp235_NC_019708(1),PHAGE_Salmon_118970_sal4_NC_030919(1),PHAGE_Entero_VT2phi_272_NC_028656(1),PHAGE_Entero_HK544_NC_019767(1),PHAGE_Entero_HK542_NC_019769(1),PHAGE_Entero_IME10_NC_019501(1),PHAGE_Pseudo_phiPSA1_NC_024365(1),PHAGE_Salmon_SP_058_NC_021772(1),PHAGE_Cronob_phiES15_NC_018454(1),PHAGE_Stx2_c_1717_NC_011357(1),PHAGE_Shigel_POCJ13_NC_025434(1),PHAGE_Entero_c_1_NC_019706(1),PHAGE_Salmon_HK620_NC_002730(1),PHAGE_Escher_phiV10_NC_007804(1),PHAGE_Entero_YYZ_2008_NC_011356(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Escher_Pollock_NC_027381(1),PHAGE_Escher_phi191_NC_028660(1),PHAGE_Salmon_SJ46_NC_031129(1),PHAGE_Salmon_ST64T_NC_004348(1),PHAGE_Thalas_BA3_NC_009990(1) 5 22.22% 53.00% 12 10.4Kb incomplete(60) transposase,head 5578338-5588753 0 16 10 1 68.7% 5 yes 10 PHAGE_Staphy_SPbeta_like_NC_029119(2),PHAGE_Cronob_phiES15_NC_018454(2),PHAGE_Salmon_SJ46_NC_031129(2),PHAGE_Entero_HK225_NC_019717(2),PHAGE_Salisa_1_NC_017983(1),PHAGE_Erwini_ENT90_NC_019932(1),PHAGE_Ralsto_RSK1_NC_022915(1),PHAGE_Escher_D108_NC_013594(1),PHAGE_Entero_P1_NC_005856(1),PHAGE_Phage_Gifsy_2_NC_010393(1),PHAGE_Shigel_SfIV_NC_022749(1),PHAGE_Entero_Mu_NC_000929(1),PHAGE_Edward_GF_2_NC_026611(1),PHAGE_Entero_phi80_NC_021190(1),PHAGE_Phage_Gifsy_1_NC_010392(1),PHAGE_Sodali_phiSG1_NC_007902(1),PHAGE_Entero_HK140_NC_019710(1),PHAGE_Entero_P88_NC_026014(1),PHAGE_Vibrio_PVA1_NC_023605(1),PHAGE_Entero_mEp237_NC_019704(1),PHAGE_Salmon_SPN3UB_NC_019545(1),PHAGE_Salmon_SEN34_NC_028699(1),PHAGE_Pseudo_PS_1_NC_029066(1),PHAGE_Escher_pro483_NC_028943(1) 1 12.5% 52.27%