Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1028922199

GenInfo (GI) Number: 0000000000

Download Results: 1028922199.PHASTER.zip

gi|00000000|ref|CP015755.1| Klebsiella pneumoniae strain W14 plasmid unnamed2, complete 109349, gc%: 49.35%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
1107.4Kbintact150116413-107858 info_outlinePHAGE_Salmon_SSU5_NC_018843(95)49.30%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP015755.1| Klebsiella pneumoniae strain W14 plasmid unnamed2, complete 109349, gc%: 49.35%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 120 CDS

#CDS PositionBLAST HitE-ValueSequence
1413..1159PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26450; phage(gi410491486)3.32e-107Showinfo_outline
21169..1738PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H-like domain-containing protein; A7321_26455; phage(gi410491487)5.44e-127Showinfo_outline
31814..4117PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, alpha subunit; A7321_26460; phage(gi410491488)0.0Showinfo_outline
44248..5390PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, beta subunit; A7321_26465; phage(gi410491489)0.0Showinfo_outline
55468..6343PHAGE_Salmon_SSU5_NC_018843: putative phosphoribosyl-ATP pyrophosphohydrolase-like domain-containing protein; A7321_26470; phage(gi410491490)0.0Showinfo_outline
66537..7640PHAGE_Salmon_SSU5_NC_018843: putative thymidylate synthase; A7321_26475; phage(gi410491491)0.0Showinfo_outline
77642..8055PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26480; phage(gi410491492)1.26e-72Showinfo_outline
88052..8528PHAGE_Salmon_SSU5_NC_018843: putative dihydrofolate reductase; A7321_26485; phage(gi410491493)2.83e-91Showinfo_outline
98528..9172PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26490; phage(gi410491494)1.65e-124Showinfo_outline
109236..9655PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26495; phage(gi410491495)9.91e-73Showinfo_outline
119665..10222PHAGE_Salmon_SSU5_NC_018843: putative exonuclease; A7321_26500; phage(gi410491496)3.26e-114Showinfo_outline
1210348..11181PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26505; phage(gi410491497)8.99e-102Showinfo_outline
1311366..11959PHAGE_Salmon_SSU5_NC_018843: putative N-6-adenine-methyltransferase; A7321_26510; phage(gi410491498)6.83e-128Showinfo_outline
1412157..12390PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26515; phage(gi410491499)4.70e-43Showinfo_outline
1512963..13550PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H; A7321_26520; phage(gi410491500)5.77e-118Showinfo_outline
16complement(14148..14336)hypothetical protein; A7321_265250.0Showinfo_outline
1714548..14973PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A7321_26530; phage(gi100118)8.47e-78Showinfo_outline
1814973..15128PHAGE_Escher_Pollock_NC_027381: hypothetical protein; A7321_26535; phage(gi849254797)4.63e-09Showinfo_outline
1915237..15258attL0.0Showinfo_outline
2015256..15834PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26540; phage(gi410491504)7.81e-74Showinfo_outline
2115963..17648PHAGE_Salmon_SSU5_NC_018843: putative DNA modification methylase; A7321_26545; phage(gi410491505)0.0Showinfo_outline
2217710..18438PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26550; phage(gi410491506)6.75e-106Showinfo_outline
2318554..19195PHAGE_Salmon_SSU5_NC_018843: putative guanosine polyphosphate pyrophospho hydrolase/synthetase; A7321_26555; phage(gi410491509)5.67e-131Showinfo_outline
2419192..19728PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26560; phage(gi410491510)4.05e-97Showinfo_outline
2519725..20093PHAGE_Cronob_ENT47670_NC_019927: hypothetical protein; A7321_26565; phage(gi431810533)1.49e-13Showinfo_outline
2620090..20347hypothetical protein; A7321_265700.0Showinfo_outline
2720478..20741PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26575; phage(gi410491513)1.17e-38Showinfo_outline
2821549..21866PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26580; phage(gi410491515)2.16e-54Showinfo_outline
2923791..24009PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26585; phage(gi410491521)3.13e-37Showinfo_outline
3024022..24234PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26590; phage(gi410491522)1.17e-32Showinfo_outline
3124371..24682PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26595; phage(gi410491523)5.11e-44Showinfo_outline
3224802..25209PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26600; phage(gi410491524)8.75e-30Showinfo_outline
3325336..25617PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26605; phage(gi410491525)4.21e-55Showinfo_outline
3425823..26305PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26610; phage(gi410491527)1.81e-91Showinfo_outline
35complement(26898..27101)PHAGE_Salmon_SSU5_NC_018843: putative MIT family metal ion transporter CorA; A7321_26615; phage(gi410491529)2.75e-39Showinfo_outline
36complement(27152..27802)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26620; phage(gi410491530)4.00e-145Showinfo_outline
37complement(28436..28966)PHAGE_Salmon_SSU5_NC_018843: putative repressor of phase 1 flagellin; A7321_26625; phage(gi410491531)1.72e-92Showinfo_outline
3829122..29559PHAGE_Salmon_SSU5_NC_018843: putative lipoprotein; A7321_26630; phage(gi410491532)1.03e-15Showinfo_outline
39complement(29610..29885)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26635; phage(gi410491533)8.64e-40Showinfo_outline
40complement(29888..31447)PHAGE_Salmon_SSU5_NC_018843: putative helicase; A7321_26640; phage(gi410491534)0.0Showinfo_outline
4131507..32211PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; A7321_26645; phage(gi410491535)2.80e-145Showinfo_outline
4232211..32879PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; A7321_26650; phage(gi410491536)7.33e-145Showinfo_outline
4332876..33517PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; A7321_26655; phage(gi410491537)1.92e-150Showinfo_outline
4433507..34058hypothetical protein; A7321_266600.0Showinfo_outline
4534055..34945PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; A7321_26665; phage(gi410491539)0.0Showinfo_outline
4634955..35221PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26670; phage(gi410491540)8.05e-42Showinfo_outline
4735397..36038PHAGE_Salmon_SSU5_NC_018843: putative DNA-binding protein; A7321_26675; phage(gi410491411)1.27e-109Showinfo_outline
4836041..37297PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; A7321_26680; phage(gi410491412)0.0Showinfo_outline
4937330..38904PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26685; phage(gi410491413)0.0Showinfo_outline
5038927..39826PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26690; phage(gi410491414)0.0Showinfo_outline
5139853..40731PHAGE_Salmon_SSU5_NC_018843: putative major capsid protein; A7321_26695; phage(gi410491415)0.0Showinfo_outline
5240810..41238PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; A7321_26700; phage(gi410491416)1.23e-39Showinfo_outline
5341286..41720PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26705; phage(gi410491417)1.20e-84Showinfo_outline
5441720..42553PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26710; phage(gi410491418)1.53e-176Showinfo_outline
5542651..42995PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26715; phage(gi410491419)3.73e-73Showinfo_outline
5642986..43459PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26720; phage(gi410491420)2.78e-103Showinfo_outline
5743461..43853PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26725; phage(gi410491421)6.64e-63Showinfo_outline
5843921..44667PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; A7321_26730; phage(gi410491422)1.18e-145Showinfo_outline
5944729..45046PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26735; phage(gi410491423)1.71e-64Showinfo_outline
6045163..45396PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26740; phage(gi410491424)4.30e-46Showinfo_outline
6145404..49939PHAGE_Salmon_SSU5_NC_018843: putative tail tape measure protein; A7321_26745; phage(gi410491425)0.0Showinfo_outline
6249983..50318PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein M; A7321_26750; phage(gi410491426)2.34e-67Showinfo_outline
6350405..51103PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein L; A7321_26755; phage(gi410491427)5.38e-158Showinfo_outline
6451096..51893PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; A7321_26760; phage(gi410491428)2.92e-175Showinfo_outline
6551881..52492PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; A7321_26765; phage(gi410491429)2.10e-112Showinfo_outline
6652509..64646PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; A7321_26770; phage(gi410491430)0.0Showinfo_outline
6764699..66144PHAGE_Klebsi_Sushi_NC_028774: tail fiber; A7321_26775; phage(gi971742192)1.26e-50Showinfo_outline
6866235..66558PHAGE_Salmon_SSU5_NC_018843: putative holin; A7321_26780; phage(gi410491436)3.68e-70Showinfo_outline
6966572..67264PHAGE_Salmon_SSU5_NC_018843: putative endolysin; A7321_26785; phage(gi410491437)2.95e-156Showinfo_outline
7067267..67518PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26790; phage(gi410491438)5.14e-36Showinfo_outline
7167469..67654PHAGE_Salmon_SSU5_NC_018843: putative Rz1 protein; A7321_26795; phage(gi410491439)2.14e-25Showinfo_outline
72complement(67715..68272)hypothetical protein; A7321_268000.0Showinfo_outline
7368592..69257PHAGE_Salmon_SSU5_NC_018843: putative ParA family protein; A7321_26805; phage(gi410491443)3.60e-132Showinfo_outline
7469257..69619PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26810; phage(gi410491444)2.53e-62Showinfo_outline
7569663..71375hypothetical protein; A7321_268150.0Showinfo_outline
7671553..72278PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26820; phage(gi410491448)1.26e-163Showinfo_outline
7772343..73672PHAGE_Salmon_SSU5_NC_018843: putative DNA helicase; A7321_26825; phage(gi410491449)0.0Showinfo_outline
7873826..74944PHAGE_Salmon_SSU5_NC_018843: putative DNA primase; A7321_26830; phage(gi410491450)0.0Showinfo_outline
79complement(74987..76153)hypothetical protein; A7321_268350.0Showinfo_outline
8076442..77230PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26840; phage(gi410491452)5.97e-95Showinfo_outline
8177310..77777PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26845; phage(gi410491453)3.23e-65Showinfo_outline
8277777..79099PHAGE_Salmon_SSU5_NC_018843: putative DNA ligase; A7321_26850; phage(gi410491454)0.0Showinfo_outline
8379099..79275PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26855; phage(gi410491455)5.73e-23Showinfo_outline
8479259..79474PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26860; phage(gi410491456)2.46e-33Showinfo_outline
8579620..79919PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26865; phage(gi410491458)7.35e-39Showinfo_outline
8680676..80750tRNA0.0Showinfo_outline
8780898..80984tRNA0.0Showinfo_outline
88complement(81153..82067)hypothetical protein; A7321_268750.0Showinfo_outline
8982227..83003PHAGE_Erwini_PhiEaH1_NC_023610: PhoH; A7321_26880; phage(gi589287556)1.83e-121Showinfo_outline
9083013..83399PHAGE_Shigel_Sf6_NC_005344: hypothetical protein; A7321_26885; phage(gi41057339)3.65e-63Showinfo_outline
9183396..83641PHAGE_Pseudo_OBP_NC_016571: putative glutaredoxin; A7321_26890; phage(gi371671381)1.18e-14Showinfo_outline
9283736..84353hypothetical protein; A7321_268950.0Showinfo_outline
9384363..84773PHAGE_Escher_HK639_NC_016158: hypothetical protein; A7321_26900; phage(gi356870618)2.28e-17Showinfo_outline
94complement(84837..85193)hypothetical protein; A7321_269050.0Showinfo_outline
9585551..86651PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage integrase protein; A7321_26910; phage(gi169257266)1.26e-23Showinfo_outline
96complement(86646..87026)PHAGE_Rhizob_RHEph10_NC_034248: hypothetical protein; A7321_26915; phage(gi100041)5.82e-10Showinfo_outline
9787300..87512hypothetical protein; A7321_269200.0Showinfo_outline
9887629..89908PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; A7321_26925; phage(gi410491459)0.0Showinfo_outline
9989986..90007attR0.0Showinfo_outline
10090005..91237PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; A7321_26930; phage(gi410491460)0.0Showinfo_outline
10191418..94936PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; A7321_26935; phage(gi410491462)0.0Showinfo_outline
10294933..95376PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26940; phage(gi410491463)5.50e-81Showinfo_outline
103complement(95529..95744)PHAGE_Lactoc_bIL312_NC_002671: Csp; A7321_26945; phage(gi13095918)1.64e-22Showinfo_outline
10496094..96525PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26950; phage(gi410491466)1.26e-91Showinfo_outline
10596645..97652PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26955; phage(gi410491467)0.0Showinfo_outline
10697713..98657PHAGE_Salmon_SSU5_NC_018843: DNA polymerase I; A7321_26960; phage(gi410491468)0.0Showinfo_outline
10798657..98923PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26965; phage(gi410491469)7.32e-49Showinfo_outline
10898926..100005PHAGE_Salmon_SSU5_NC_018843: putative RecA-like recombinase; A7321_26970; phage(gi410491470)0.0Showinfo_outline
109100099..100302PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26975; phage(gi410491471)8.69e-24Showinfo_outline
110100302..101132PHAGE_Salmon_SSU5_NC_018843: putative SPFH domain / band 7 protein; A7321_26980; phage(gi410491472)0.0Showinfo_outline
111101450..102112PHAGE_Yersin_phiR1_37_NC_016163: hypothetical protein; A7321_26985; phage(gi358356637)5.05e-30Showinfo_outline
112102181..102357PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26990; phage(gi410491474)6.98e-17Showinfo_outline
113102544..102723PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_26995; phage(gi410491476)3.48e-13Showinfo_outline
114102720..103055PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_27000; phage(gi410491477)3.21e-46Showinfo_outline
115103055..103267PHAGE_Salmon_SSU5_NC_018843: putative Cre-associated protein; A7321_27005; phage(gi410491478)1.19e-36Showinfo_outline
116complement(103719..104816)PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; A7321_27010; phage(gi410491479)7.76e-99Showinfo_outline
117105137..105781PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_27015; phage(gi410491480)2.78e-127Showinfo_outline
118105857..106351PHAGE_Salmon_SSU5_NC_018843: putative GNAT family acetyltransferase; A7321_27020; phage(gi410491481)1.38e-86Showinfo_outline
119106540..107625PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 1; A7321_27025; phage(gi410491483)0.0Showinfo_outline
120107580..107858PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; A7321_27030; phage(gi410491484)2.60e-24Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 109349 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download