Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1030066250

GenInfo (GI) Number: 0000000000

Download Results: 1030066250.PHASTER.zip

gi|00000000|ref|CP014756.1| Klebsiella pneumoniae strain AATZP plasmid pKPN-04f, complete 121030, gc%: 49.28%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
1120.7Kbintact150117322-121030 info_outlinePHAGE_Salmon_SSU5_NC_018843(90)49.28%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP014756.1| Klebsiella pneumoniae strain AATZP plasmid pKPN-04f, complete 121030, gc%: 49.28%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 119 CDS

#CDS PositionBLAST HitE-ValueSequence
1322..1419PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; WM86_26285; phage(gi410491479)1.22e-98Showinfo_outline
2complement(1872..2084)PHAGE_Salmon_SSU5_NC_018843: putative Cre-associated protein; WM86_26290; phage(gi410491478)1.19e-36Showinfo_outline
3complement(2084..2419)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26295; phage(gi410491477)8.51e-46Showinfo_outline
4complement(2416..2595)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26300; phage(gi410491476)1.66e-13Showinfo_outline
5complement(2782..2958)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26305; phage(gi410491474)7.74e-17Showinfo_outline
63070..3086attL0.0Showinfo_outline
7complement(3129..4205)PHAGE_Salmon_SSU5_NC_018843: putative RecA-like recombinase; WM86_26310; phage(gi410491470)0.0Showinfo_outline
8complement(4208..4474)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26315; phage(gi410491469)2.07e-49Showinfo_outline
9complement(4474..5418)PHAGE_Salmon_SSU5_NC_018843: DNA polymerase I; WM86_26320; phage(gi410491468)0.0Showinfo_outline
10complement(5479..6486)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26325; phage(gi410491467)0.0Showinfo_outline
11complement(6606..7037)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26330; phage(gi410491466)2.34e-92Showinfo_outline
12complement(7193..7492)hypothetical protein; WM86_263350.0Showinfo_outline
13complement(7503..7922)PHAGE_Entero_mEp460_NC_019716: hypothetical protein; WM86_26340; phage(gi428782367)3.66e-63Showinfo_outline
14complement(8123..8566)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26345; phage(gi410491463)2.71e-82Showinfo_outline
15complement(8563..9057)PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; WM86_26350; phage(gi410491462)1.32e-104Showinfo_outline
16complement(9754..10335)PHAGE_Myxoco_Mx8_NC_003085: hypothetical protein; WM86_26355; phage(gi15320585)4.50e-21Showinfo_outline
17complement(10488..12815)PHAGE_Salmon_SSU5_NC_018843: DNA polymerase III alpha subunit; WM86_26360; phage(gi410491462)0.0Showinfo_outline
18complement(13264..15612)PROPHAGE_Xantho_306: Tn5044 transposase; WM86_26365; phage(gi21243163)3.30e-96Showinfo_outline
19complement(16333..17469)PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; WM86_26370; phage(gi410491460)0.0Showinfo_outline
20complement(17566..19845)PHAGE_Salmon_SSU5_NC_018843: putative porphyrin biosynthetic protein; WM86_26375; phage(gi410491459)0.0Showinfo_outline
21complement(19962..20174)hypothetical protein; WM86_263800.0Showinfo_outline
2220448..20828PHAGE_Rhizob_RHEph10_NC_034248: hypothetical protein; WM86_26385; phage(gi100041)5.82e-10Showinfo_outline
23complement(20823..21923)PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage integrase protein; WM86_26390; phage(gi169257266)4.59e-23Showinfo_outline
24complement(23287..23703)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; WM86_26395; phage(gi966197913)1.16e-15Showinfo_outline
25complement(23694..24221)hypothetical protein; WM86_264000.0Showinfo_outline
26complement(24414..24671)PHAGE_Pseudo_OBP_NC_016571: putative glutaredoxin; WM86_26405; phage(gi371671381)2.39e-13Showinfo_outline
2724780..26807restriction endonuclease subunit M; WM86_264100.0Showinfo_outline
2826804..28120restriction endonuclease subunit S; WM86_264150.0Showinfo_outline
2928121..31378restriction endonuclease; WM86_264200.0Showinfo_outline
3031383..32651PHAGE_Burkho_Bcep22_NC_005262: ISL3 family transposase; WM86_26425; phage(gi38640338)5.05e-71Showinfo_outline
31complement(32830..33048)PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; WM86_26430; phage(gi966197886)5.33e-13Showinfo_outline
32complement(33069..33845)PHAGE_Erwini_PhiEaH1_NC_023610: PhoH; WM86_26435; phage(gi589287556)2.53e-119Showinfo_outline
3334066..35574hypothetical protein; WM86_264400.0Showinfo_outline
34complement(36243..36542)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26445; phage(gi410491458)3.79e-39Showinfo_outline
35complement(36822..37289)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26450; phage(gi410491453)9.95e-68Showinfo_outline
36complement(37369..38157)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26455; phage(gi410491452)6.56e-93Showinfo_outline
3738446..39612hypothetical protein; WM86_264600.0Showinfo_outline
38complement(39647..40765)PHAGE_Salmon_SSU5_NC_018843: putative DNA primase; WM86_26465; phage(gi410491450)0.0Showinfo_outline
39complement(40918..42258)PHAGE_Salmon_SSU5_NC_018843: putative DNA helicase; WM86_26470; phage(gi410491449)0.0Showinfo_outline
40complement(42323..43048)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26475; phage(gi410491448)8.72e-163Showinfo_outline
4143342..44400hypothetical protein; WM86_264800.0Showinfo_outline
42complement(44460..44822)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26485; phage(gi410491444)3.41e-63Showinfo_outline
43complement(44822..45487)PHAGE_Salmon_SSU5_NC_018843: putative ParA family protein; WM86_26490; phage(gi410491443)3.60e-132Showinfo_outline
4445898..46248PHAGE_Clostr_c_st_NC_007581: putative NAD-dependent DNA ligase; WM86_26495; phage(gi80159718)1.63e-05Showinfo_outline
45complement(46303..46518)PHAGE_Salmon_SSU5_NC_018843: putative Rz1 protein; WM86_26500; phage(gi410491439)1.19e-26Showinfo_outline
46complement(46451..46702)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26505; phage(gi410491438)5.95e-37Showinfo_outline
47complement(46705..47397)PHAGE_Salmon_SSU5_NC_018843: putative endolysin; WM86_26510; phage(gi410491437)1.20e-155Showinfo_outline
48complement(47411..47734)PHAGE_Salmon_SSU5_NC_018843: putative holin; WM86_26515; phage(gi410491436)3.68e-70Showinfo_outline
49complement(47830..49275)PHAGE_Klebsi_Sushi_NC_028774: tail fiber; WM86_26520; phage(gi971742192)1.64e-48Showinfo_outline
50complement(49328..61498)PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; WM86_26525; phage(gi410491430)0.0Showinfo_outline
51complement(61515..62126)PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; WM86_26530; phage(gi410491429)2.10e-112Showinfo_outline
52complement(62114..62911)PHAGE_Salmon_SSU5_NC_018843: putative phage tail protein; WM86_26535; phage(gi410491428)2.92e-175Showinfo_outline
53complement(62904..63602)PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein L; WM86_26540; phage(gi410491427)2.50e-158Showinfo_outline
54complement(63689..64024)PHAGE_Salmon_SSU5_NC_018843: putative minor tail protein M; WM86_26545; phage(gi410491426)2.32e-67Showinfo_outline
55complement(64068..68603)PHAGE_Salmon_SSU5_NC_018843: putative tail tape measure protein; WM86_26550; phage(gi410491425)0.0Showinfo_outline
56complement(68611..68844)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26555; phage(gi410491424)4.30e-46Showinfo_outline
57complement(68961..69278)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26560; phage(gi410491423)1.71e-64Showinfo_outline
58complement(69340..70086)PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; WM86_26565; phage(gi410491422)2.40e-146Showinfo_outline
59complement(70154..70546)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26570; phage(gi410491421)2.03e-63Showinfo_outline
60complement(70548..71021)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26575; phage(gi410491420)2.14e-103Showinfo_outline
61complement(71012..71356)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26580; phage(gi410491419)3.73e-73Showinfo_outline
62complement(71454..72287)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26585; phage(gi410491418)2.10e-178Showinfo_outline
63complement(72287..72721)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26590; phage(gi410491417)1.48e-84Showinfo_outline
64complement(72769..73197)PHAGE_Salmon_SSU5_NC_018843: putative Ig-like domain-containing protein; WM86_26595; phage(gi410491416)1.97e-40Showinfo_outline
65complement(73276..74154)PHAGE_Salmon_SSU5_NC_018843: putative major capsid protein; WM86_26600; phage(gi410491415)0.0Showinfo_outline
66complement(74181..75080)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26605; phage(gi410491414)0.0Showinfo_outline
67complement(75103..76677)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26610; phage(gi410491413)0.0Showinfo_outline
68complement(76710..77966)PHAGE_Salmon_SSU5_NC_018843: putative terminase large subunit; WM86_26615; phage(gi410491412)0.0Showinfo_outline
69complement(77969..78610)PHAGE_Salmon_SSU5_NC_018843: putative DNA-binding protein; WM86_26620; phage(gi410491411)1.27e-109Showinfo_outline
70complement(78786..79052)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26625; phage(gi410491540)8.05e-42Showinfo_outline
71complement(79062..79952)PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; WM86_26630; phage(gi410491539)0.0Showinfo_outline
72complement(79958..80212)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26635; phage(gi410491538)1.08e-54Showinfo_outline
73complement(80205..80843)PHAGE_Salmon_SSU5_NC_018843: putative ABC transporter ATP-binding protein; WM86_26640; phage(gi410491537)3.54e-151Showinfo_outline
74complement(80840..81508)PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; WM86_26645; phage(gi410491536)1.92e-144Showinfo_outline
75complement(81508..82212)PHAGE_Salmon_SSU5_NC_018843: putative ParB-like nuclease domain-containing protein; WM86_26650; phage(gi410491535)8.14e-146Showinfo_outline
7682272..83831PHAGE_Salmon_SSU5_NC_018843: putative helicase; WM86_26655; phage(gi410491534)0.0Showinfo_outline
7783834..84109PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26660; phage(gi410491533)8.64e-40Showinfo_outline
78complement(84160..84597)PHAGE_Salmon_SSU5_NC_018843: putative lipoprotein; WM86_26665; phage(gi410491532)3.69e-15Showinfo_outline
7984753..85283PHAGE_Salmon_SSU5_NC_018843: putative repressor of phase 1 flagellin; WM86_26670; phage(gi410491531)1.72e-92Showinfo_outline
8085917..86567PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26675; phage(gi410491530)4.00e-145Showinfo_outline
8186618..86821PHAGE_Salmon_SSU5_NC_018843: putative MIT family metal ion transporter CorA; WM86_26680; phage(gi410491529)2.75e-39Showinfo_outline
82complement(87413..87895)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26685; phage(gi410491527)2.44e-85Showinfo_outline
83complement(88101..88382)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26690; phage(gi410491525)8.44e-53Showinfo_outline
84complement(88385..88759)hypothetical protein; WM86_266950.0Showinfo_outline
85complement(88887..89294)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26700; phage(gi410491524)8.75e-30Showinfo_outline
86complement(89414..89725)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26705; phage(gi410491523)3.13e-44Showinfo_outline
87complement(89862..90074)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26710; phage(gi410491522)3.39e-32Showinfo_outline
88complement(90087..90305)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26715; phage(gi410491521)2.97e-34Showinfo_outline
8990867..91058hypothetical protein; WM86_267200.0Showinfo_outline
90complement(91855..93081)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26725; phage(gi410491517)1.48e-157Showinfo_outline
91complement(93252..93569)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26730; phage(gi410491515)5.26e-54Showinfo_outline
9294184..94930hypothetical protein; WM86_267350.0Showinfo_outline
93complement(95777..96136)hypothetical protein; WM86_267400.0Showinfo_outline
94complement(96318..96581)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26745; phage(gi410491513)5.01e-38Showinfo_outline
95complement(96733..97434)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26750; phage(gi410491506)2.66e-103Showinfo_outline
96complement(97523..99208)PHAGE_Salmon_SSU5_NC_018843: putative DNA modification methylase; WM86_26755; phage(gi410491505)0.0Showinfo_outline
9799228..99244attR0.0Showinfo_outline
9899598..101667HypX; WM86_267600.0Showinfo_outline
99complement(102488..103075)PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H; WM86_26765; phage(gi410491500)5.77e-118Showinfo_outline
100complement(103654..103881)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26770; phage(gi410491499)4.44e-43Showinfo_outline
101complement(104079..104672)PHAGE_Salmon_SSU5_NC_018843: putative N-6-adenine-methyltransferase; WM86_26775; phage(gi410491498)6.83e-128Showinfo_outline
102complement(104857..105690)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26780; phage(gi410491497)1.02e-101Showinfo_outline
103complement(105816..106364)PHAGE_Salmon_SSU5_NC_018843: putative exonuclease; WM86_26785; phage(gi410491496)5.43e-100Showinfo_outline
104complement(106361..106942)PHAGE_Burkho_BcepMigl_NC_019917: hypothetical protein; WM86_26790; phage(gi431809871)1.40e-41Showinfo_outline
105complement(107165..107584)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26795; phage(gi410491495)9.91e-73Showinfo_outline
106complement(107648..108292)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26800; phage(gi410491494)2.98e-124Showinfo_outline
107complement(108292..108768)PHAGE_Salmon_SSU5_NC_018843: putative dihydrofolate reductase; WM86_26805; phage(gi410491493)5.10e-92Showinfo_outline
108complement(108765..109178)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26810; phage(gi410491492)1.25e-72Showinfo_outline
109complement(109180..110283)PHAGE_Salmon_SSU5_NC_018843: putative thymidylate synthase; WM86_26815; phage(gi410491491)0.0Showinfo_outline
110complement(110477..111352)PHAGE_Salmon_SSU5_NC_018843: putative phosphoribosyl-ATP pyrophosphohydrolase-like domain-containing protein; WM86_26820; phage(gi410491490)0.0Showinfo_outline
111complement(111430..112572)PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, beta subunit; WM86_26825; phage(gi410491489)0.0Showinfo_outline
112complement(112703..115006)PHAGE_Salmon_SSU5_NC_018843: putative ribonucleotide-diphosphate reductase, alpha subunit; WM86_26830; phage(gi410491488)0.0Showinfo_outline
113complement(115082..115651)PHAGE_Salmon_SSU5_NC_018843: putative ribonuclease H-like domain-containing protein; WM86_26835; phage(gi410491487)1.01e-127Showinfo_outline
114complement(115661..116407)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26840; phage(gi410491486)3.34e-106Showinfo_outline
115complement(116397..118313)PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 2; WM86_26845; phage(gi410491485)0.0Showinfo_outline
116complement(118310..118588)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26850; phage(gi410491484)2.60e-24Showinfo_outline
117complement(118543..119628)PHAGE_Salmon_SSU5_NC_018843: putative exonuclease subunit 1; WM86_26855; phage(gi410491483)0.0Showinfo_outline
118complement(119816..120310)PHAGE_Salmon_SSU5_NC_018843: putative GNAT family acetyltransferase; WM86_26860; phage(gi410491481)1.30e-79Showinfo_outline
119complement(120386..121030)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; WM86_26865; phage(gi410491480)1.64e-127Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 121030 bps
Phages: 1
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download