Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1032612488

GenInfo (GI) Number: 0000000000

Download Results: 1032612488.PHASTER.zip

gi|00000000|ref|NZ_JZTX01000001.1| Stenotrophomonas maltophilia strain ISMMS7 scf7180000000004, whole 4685044, gc%: 66.87%

Download summary as .txt file: summary.txt file_download

Total: 4 prophage regions have been identified, of which 2 regions are intact, 2 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
115.9Kbincomplete301625438-41432 info_outlinePHAGE_Stenot_S1_NC_011589(3)64.93%Show info_outline
243.3Kbintact15045314065-357422 info_outlinePHAGE_Stenot_Smp131_NC_023588(35)65.07%Show info_outline
327.2Kbincomplete60214024398-4051650 info_outlinePHAGE_Shigel_Sf6_NC_005344(2)60.83%Show info_outline
422.3Kbintact110234052132-4074435 info_outlinePHAGE_Xantho_CP1_NC_019933(6)65.50%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NZ_JZTX01000001.1| Stenotrophomonas maltophilia strain ISMMS7 scf7180000000004, whole 4685044, gc%: 66.87%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 18 CDS

#CDS PositionBLAST HitE-ValueSequence
125438..25449attL0.0Showinfo_outline
227010..29493PHAGE_Rhizob_vB_RleM_PPF1_NC_025427: putative ATP-dependent DNA ligase; VO93_RS00130; phage(gi712912735)4.53e-51Showinfo_outline
3complement(29552..29944)hypothetical protein; VO93_RS001350.0Showinfo_outline
4complement(30110..31027)PHAGE_Prochl_P_TIM68_NC_028955: putative zinc-containing alcohol dehydrogenase superfamily protein; VO93_RS00140; phage(gi971760362)3.65e-09Showinfo_outline
531198..32388PHAGE_Stenot_S1_NC_011589: putative integrase; VO93_RS00145; phage(gi213163927)1.29e-139Showinfo_outline
632983..33255PHAGE_Entero_P4_NC_001609: transcriptional regulator; VO93_RS21395; phage(gi9627517)1.08e-11Showinfo_outline
733252..33455hypothetical protein; VO93_RS001500.0Showinfo_outline
833465..33752PHAGE_Burkho_KL3_NC_015266: gp9; VO93_RS00155; phage(gi327198054)8.67e-11Showinfo_outline
934049..34258PHAGE_Stenot_Smp131_NC_023588: hypothetical protein; VO93_RS00160; phage(gi589892024)2.33e-05Showinfo_outline
1034255..34470hypothetical protein; VO93_RS001650.0Showinfo_outline
1134467..35117hypothetical protein; VO93_RS001700.0Showinfo_outline
1235104..35955PHAGE_Idioma_1N2_2_NC_025439: putative primase-helicase; VO93_RS00175; phage(gi712913855)3.37e-38Showinfo_outline
1336014..37864PHAGE_Thermo_THSA_485A_NC_018264: protein of unknown function DUF927; VO93_RS00180; phage(gi397912648)2.21e-17Showinfo_outline
1437937..38686hypothetical protein; VO93_RS001850.0Showinfo_outline
1538710..39723PHAGE_Stenot_Smp131_NC_023588: phage portal vertex protein; VO93_RS00190; phage(gi589891994)0.0Showinfo_outline
16complement(39819..40166)XRE family transcriptional regulator; VO93_RS001950.0Showinfo_outline
17complement(40163..40504)PHAGE_Shigel_Stx_NC_029120: hypothetical protein; VO93_RS00200; phage(gi985761269)6.06e-08Showinfo_outline
1841432..41443attR0.0Showinfo_outline

Region 2, total 47 CDS

#CDS PositionBLAST HitE-ValueSequence
1314065..314079attL0.0Showinfo_outline
2319389..320303PHAGE_Acinet_vB_AbaS_TRS1_NC_031098: DNA helicase; VO93_RS01310; phage(gi100021)6.42e-05Showinfo_outline
3complement(320344..320583)hypothetical protein; VO93_RS221400.0Showinfo_outline
4complement(320863..321318)hypothetical protein; VO93_RS013200.0Showinfo_outline
5complement(321315..321500)hypothetical protein; VO93_RS013250.0Showinfo_outline
6complement(321493..321909)PHAGE_Stenot_Smp131_NC_023588: hypothetical protein; VO93_RS01330; phage(gi589892028)5.46e-35Showinfo_outline
7complement(322270..324966)PHAGE_Stenot_Smp131_NC_023588: DNA primase-like protein; VO93_RS01340; phage(gi589892027)0.0Showinfo_outline
8complement(325159..325416)PHAGE_Stenot_Smp131_NC_023588: hypothetical protein; VO93_RS01345; phage(gi589892026)3.50e-15Showinfo_outline
9complement(325416..325724)PHAGE_Stenot_Smp131_NC_023588: hypothetical protein; VO93_RS01350; phage(gi589892025)5.89e-28Showinfo_outline
10complement(325721..325963)PHAGE_Stenot_Smp131_NC_023588: hypothetical protein; VO93_RS01355; phage(gi589892024)2.11e-42Showinfo_outline
11complement(326287..326493)PHAGE_Stenot_Smp131_NC_023588: hypothetical protein; VO93_RS21465; phage(gi589892023)3.06e-31Showinfo_outline
12complement(326561..326905)PHAGE_Stenot_Smp131_NC_023588: putative bacteriophage transcriptional activator; VO93_RS21470; phage(gi589892022)1.91e-56Showinfo_outline
13complement(326902..327234)PHAGE_Pseudo_vB_PaeS_PM105_NC_028667: hypothetical protein; VO93_RS21475; phage(gi966198698)2.06e-10Showinfo_outline
14327379..327750PHAGE_Burkho_KS5_NC_015265: gp11; VO93_RS01360; phage(gi327198009)2.82e-14Showinfo_outline
15327849..328202hypothetical protein; VO93_RS013650.0Showinfo_outline
16complement(328147..329166)PHAGE_Stenot_Smp131_NC_023588: phage late gene control protein; VO93_RS01370; phage(gi589892020)7.40e-174Showinfo_outline
17complement(329163..329561)PHAGE_Stenot_Smp131_NC_023588: phage tail protein; VO93_RS01375; phage(gi589892019)3.89e-89Showinfo_outline
18complement(329573..332437)PHAGE_Stenot_Smp131_NC_023588: phage tail tape measure protein; VO93_RS01380; phage(gi589892018)0.0Showinfo_outline
19complement(332610..332726)PHAGE_Stenot_Smp131_NC_023588: tail protein; VO93_RS21480; phage(gi589892016)1.65e-19Showinfo_outline
20complement(332735..333064)PHAGE_Stenot_Smp131_NC_023588: tail protein; VO93_RS01385; phage(gi589892015)1.43e-60Showinfo_outline
21complement(333123..333632)PHAGE_Stenot_Smp131_NC_023588: tail core protein; VO93_RS01390; phage(gi589892014)6.31e-119Showinfo_outline
22complement(333656..334825)PHAGE_Stenot_Smp131_NC_023588: major tail sheath protein; VO93_RS01395; phage(gi589892013)0.0Showinfo_outline
23complement(334842..335201)PHAGE_Stenot_Smp131_NC_023588: baseplate assembly protein; VO93_RS01400; phage(gi589892012)7.33e-79Showinfo_outline
24complement(335198..335764)PHAGE_Stenot_Smp131_NC_023588: baseplate assembly protein; VO93_RS01405; phage(gi589892011)8.67e-95Showinfo_outline
25complement(335839..336489)PHAGE_Stenot_Smp131_NC_023588: hypothetical protein; VO93_RS01410; phage(gi589892010)6.54e-117Showinfo_outline
26complement(336491..338509)PHAGE_Stenot_Smp131_NC_023588: putative phage tail fiber protein; VO93_RS01415; phage(gi589892009)0.0Showinfo_outline
27complement(338519..339076)PHAGE_Stenot_Smp131_NC_023588: baseplate assembly protein; VO93_RS01420; phage(gi589892008)6.45e-132Showinfo_outline
28complement(339069..339959)PHAGE_Stenot_Smp131_NC_023588: baseplate assembly protein; VO93_RS01425; phage(gi589892007)0.0Showinfo_outline
29complement(340046..340507)PHAGE_Stenot_Smp131_NC_023588: tail completion protein; VO93_RS01430; phage(gi589892006)5.60e-101Showinfo_outline
30complement(340504..340989)PHAGE_Stenot_Smp131_NC_023588: tail completion protein; VO93_RS01435; phage(gi589892005)9.96e-81Showinfo_outline
31complement(340986..341510)PHAGE_Stenot_Smp131_NC_023588: hypothetical protein; VO93_RS01440; phage(gi589892004)4.16e-86Showinfo_outline
32complement(341510..342145)PHAGE_Stenot_Smp131_NC_023588: phage lytic enzyme; VO93_RS01445; phage(gi589892003)1.83e-111Showinfo_outline
33complement(342147..342422)PHAGE_Stenot_Smp131_NC_023588: phage-encoded membrane protein; VO93_RS01450; phage(gi589892002)3.01e-58Showinfo_outline
34complement(342415..342768)PHAGE_Stenot_Smp131_NC_023588: phage-encoded membrane protein; VO93_RS01455; phage(gi589892001)6.19e-73Showinfo_outline
35complement(342771..342986)PHAGE_Stenot_Smp131_NC_023588: tail protein; VO93_RS01460; phage(gi589892000)2.98e-32Showinfo_outline
36complement(342986..343453)PHAGE_Stenot_Smp131_NC_023588: phage head completion/stabilization protein; VO93_RS01465; phage(gi589891999)1.03e-106Showinfo_outline
37complement(343558..344265)PHAGE_Stenot_Smp131_NC_023588: phage terminase small subunit; VO93_RS01470; phage(gi589891998)1.15e-115Showinfo_outline
38complement(344268..345284)PHAGE_Stenot_Smp131_NC_023588: phage major capsid protein precursor; VO93_RS01475; phage(gi589891997)0.0Showinfo_outline
39complement(345318..346178)PHAGE_Stenot_Smp131_NC_023588: phage capsid scaffolding protein; VO93_RS01480; phage(gi589891996)1.20e-162Showinfo_outline
40346333..348090PHAGE_Stenot_Smp131_NC_023588: phage terminase ATPase subunit; VO93_RS01485; phage(gi589891995)0.0Showinfo_outline
41348090..349100PHAGE_Stenot_Smp131_NC_023588: phage portal vertex protein; VO93_RS01490; phage(gi589891994)0.0Showinfo_outline
42complement(349147..349944)hypothetical protein; VO93_RS014950.0Showinfo_outline
43350549..351001hypothetical protein; VO93_RS015000.0Showinfo_outline
44complement(351020..351685)PHAGE_Stenot_Smp131_NC_023588: hypothetical protein; VO93_RS01505; phage(gi589892032)1.14e-145Showinfo_outline
45complement(351740..352315)hypothetical protein; VO93_RS015100.0Showinfo_outline
46complement(352411..353493)PHAGE_Entero_mEp460_NC_019716: integrase; VO93_RS01515; phage(gi428782338)8.07e-70Showinfo_outline
47357422..357436attR0.0Showinfo_outline

Region 3, total 23 CDS

#CDS PositionBLAST HitE-ValueSequence
14024398..4024409attL0.0Showinfo_outline
2complement(4024779..4025935)PROPHAGE_Xantho_33913: ISxac3 transposase; VO93_RS18195; phage(gi21231086)2.95e-69Showinfo_outline
3complement(4025945..4026286)hypothetical protein; VO93_RS182050.0Showinfo_outline
4complement(4026848..4029109)PHAGE_Xylell_Xfas53_NC_013599: DNA injection protein; VO93_RS18215; phage(gi273810459)9.53e-13Showinfo_outline
5complement(4029113..4030783)PHAGE_Brucel_Pr_NC_019447: putative peptidoglycan hydrolase; VO93_RS18220; phage(gi418487860)1.08e-18Showinfo_outline
6complement(4030787..4031545)PHAGE_Xylell_Xfas53_NC_013599: DNA injection protein; VO93_RS18225; phage(gi273810457)2.99e-43Showinfo_outline
7complement(4031548..4031997)PHAGE_Roseob_SIO1_NC_002519: gp26.2; VO93_RS18230; phage(gi9964635)5.52e-09Showinfo_outline
8complement(4031997..4032548)PHAGE_Synech_S_SSM7_NC_015287: hypothetical protein; VO93_RS18235; phage(gi326783689)2.41e-11Showinfo_outline
9complement(4032747..4033463)hypothetical protein; VO93_RS182400.0Showinfo_outline
10complement(4033790..4034266)hypothetical protein; VO93_RS182450.0Showinfo_outline
11complement(4034295..4034645)PHAGE_Citrob_CR8_NC_023548: predicted homing endonuclease; VO93_RS22165; phage(gi589286161)7.41e-11Showinfo_outline
12complement(4034818..4035513)PHAGE_Escher_P13374_NC_018846: antirepressor; VO93_RS18250; phage(gi410491647)3.90e-25Showinfo_outline
13complement(4035513..4035743)PHAGE_Entero_P4_NC_001609: transcriptional regulator; VO93_RS18255; phage(gi9627517)5.94e-08Showinfo_outline
14complement(4035740..4035994)hypothetical protein; VO93_RS182600.0Showinfo_outline
15complement(4035991..4036191)PHAGE_Mycoba_Sbash_NC_026589: HTH DNA binding domain protein; VO93_RS18265; phage(gi764160022)3.29e-08Showinfo_outline
16complement(4036334..4037266)hypothetical protein; VO93_RS182700.0Showinfo_outline
17complement(4037295..4037771)hypothetical protein; VO93_RS182750.0Showinfo_outline
18complement(4037833..4038522)hypothetical protein; VO93_RS182800.0Showinfo_outline
19complement(4038522..4038752)hypothetical protein; VO93_RS220800.0Showinfo_outline
20complement(4038745..4038954)hypothetical protein; VO93_RS182850.0Showinfo_outline
21complement(4039078..4040292)PHAGE_Stenot_S1_NC_011589: putative integrase; VO93_RS18290; phage(gi213163927)3.15e-125Showinfo_outline
224040653..4042050PHAGE_Pseudo_PPpW_3_NC_023006: putative integrase family protein; VO93_RS18295; phage(gi564292506)3.14e-08Showinfo_outline
234051650..4051661attR0.0Showinfo_outline

Region 4, total 23 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(4052132..4053373)PHAGE_Xantho_CP1_NC_019933: hypothetical protein; VO93_RS18345; phage(gi431811019)1.80e-08Showinfo_outline
2complement(4053443..4058161)PHAGE_Xantho_CP1_NC_019933: putative tail component protein; VO93_RS18350; phage(gi431811018)0.0Showinfo_outline
3complement(4058152..4058544)PHAGE_Xantho_CP1_NC_019933: hypothetical protein; VO93_RS18355; phage(gi431811016)3.64e-31Showinfo_outline
4complement(4058544..4059005)PHAGE_Xantho_CP1_NC_019933: hypothetical protein; VO93_RS18360; phage(gi431811015)2.45e-41Showinfo_outline
5complement(4059002..4059358)PHAGE_Xantho_CP1_NC_019933: hypothetical protein; VO93_RS18365; phage(gi431811014)5.54e-25Showinfo_outline
6complement(4059358..4062129)PHAGE_Xantho_CP1_NC_019933: putative tail length tape measure protein; VO93_RS18370; phage(gi431811013)1.42e-116Showinfo_outline
7complement(4062122..4062316)hypothetical protein; VO93_RS183750.0Showinfo_outline
8complement(4062358..4062768)hypothetical protein; VO93_RS183800.0Showinfo_outline
9complement(4062772..4063527)PHAGE_Shewan_1/44_NC_025463: major tail protein; VO93_RS18385; phage(gi712915951)3.08e-19Showinfo_outline
10complement(4063564..4063974)hypothetical protein; VO93_RS183900.0Showinfo_outline
11complement(4064012..4064326)hypothetical protein; VO93_RS183950.0Showinfo_outline
12complement(4064341..4065099)PHAGE_Pseudo_MD8_NC_031091: hypothetical protein; VO93_RS18400; phage(gi100064)1.50e-30Showinfo_outline
13complement(4065145..4066146)PHAGE_Aurant_AmM_1_NC_027334: major capsid; VO93_RS18405; phage(gi849119858)7.17e-28Showinfo_outline
14complement(4066234..4066923)PHAGE_Aurant_AmM_1_NC_027334: head decoration protein D; VO93_RS18410; phage(gi849119857)1.52e-06Showinfo_outline
15complement(4066926..4068230)PHAGE_Burkho_AH2_NC_018283: prohead protease; VO93_RS18415; phage(gi399529103)1.04e-40Showinfo_outline
16complement(4068277..4069758)PHAGE_Vibrio_vB_VpaM_MAR_NC_019722: portal protein; VO93_RS18420; phage(gi428782728)5.87e-77Showinfo_outline
17complement(4069751..4069966)PHAGE_Shewan_1/44_NC_025463: head-tail connector; VO93_RS18425; phage(gi712915937)4.79e-07Showinfo_outline
18complement(4069968..4072028)PHAGE_Entero_cdtI_NC_009514: putative large terminase subunit; VO93_RS18430; phage(gi148609384)1.03e-173Showinfo_outline
19complement(4072030..4072533)PHAGE_Entero_cdtI_NC_009514: putative small terminase subunit; VO93_RS18435; phage(gi148609383)4.40e-29Showinfo_outline
20complement(4072727..4073014)PHAGE_Xantho_CP2_NC_020205: hypothetical protein; VO93_RS18440; phage(gi448245181)1.66e-11Showinfo_outline
21complement(4073016..4073498)PHAGE_Xantho_CP2_NC_020205: hypothetical protein; VO93_RS18445; phage(gi448245180)8.95e-13Showinfo_outline
22complement(4073495..4073950)PHAGE_Xantho_CP2_NC_020205: hypothetical protein; VO93_RS18450; phage(gi448245179)9.88e-19Showinfo_outline
23complement(4073947..4074435)PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: putative phage lysozyme; VO93_RS18455; phage(gi937533312)4.63e-90Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 4685044 bps
Phages: 4
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download