Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1034308744

GenInfo (GI) Number: 0000000000

Download Results: 1034308744.PHASTER.zip

gi|00000000|ref|KU665642.1| Klebsiella pneumoniae strain K47-25 plasmid pG12-KPC-2, complete 111926, gc%: 54.01%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
127.2Kbintact130306948-34216 info_outlinePHAGE_Salmon_SJ46_NC_031129(4)57.64%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|KU665642.1| Klebsiella pneumoniae strain K47-25 plasmid pG12-KPC-2, complete 111926, gc%: 54.01%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 30 CDS

#CDS PositionBLAST HitE-ValueSequence
16948..9977PROPHAGE_Xantho_306: Tn5044 transposase; -; phage(gi21243163)0.0Showinfo_outline
210084..11109PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; -; phage(gi557307612)2.30e-44Showinfo_outline
311106..11885PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; -; phage(gi557307613)8.13e-78Showinfo_outline
412173..13054PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; -; phage(gi100066)2.88e-94Showinfo_outline
5complement(13304..14623)PHAGE_Staphy_phiPV83_NC_002486: transposase; -; phage(gi9635722)7.29e-29Showinfo_outline
6complement(14900..16084)PROPHAGE_Shewan_MR-1: transposase, putative; -; phage(gi24373689)2.31e-142Showinfo_outline
716204..16416PHAGE_Entero_HK022_NC_002166: IS903 transposase; -; phage(gi9634149)2.33e-15Showinfo_outline
816588..16947Hypothetical Protein; pG12-KPC-2_50.0Showinfo_outline
9complement(17604..17987)Hypothetical Protein; pG12-KPC-2_60.0Showinfo_outline
10complement(18113..18733)PHAGE_Clostr_phiCD27_NC_011398: putative phage site-specific recombinase; pG12-KPC-2_7; phage(gi209901279)3.94e-07Showinfo_outline
11complement(18822..21719)PROPHAGE_Xantho_33913: Tn5041 transposase; -; phage(gi21231545)3.56e-34Showinfo_outline
1221792..22496PROPHAGE_Brucel_1330: transposase, putative; -; phage(gi23502708)1.98e-53Showinfo_outline
1322716..23051Hypothetical Protein; pG12-KPC-2_80.0Showinfo_outline
1423181..23540Beta-Lactamase OXA-9 BlaOXA-9; -0.0Showinfo_outline
1523806..24057PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; pG12-KPC-2_9; phage(gi100061)4.13e-06Showinfo_outline
16complement(24024..25307)PROPHAGE_Brucel_1330: transposase, putative; -; phage(gi23501616)1.12e-33Showinfo_outline
17complement(25382..26089)Hypothetical Protein; pG12-KPC-2_100.0Showinfo_outline
18complement(26233..26595)Transcriptional Regulator MerD; -0.0Showinfo_outline
19complement(26613..28307)Mercuric Ion Reductase MerA; -0.0Showinfo_outline
20complement(28359..28781)Mercury Transport Protein MerC; -0.0Showinfo_outline
21complement(28943..29320)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; -; phage(gi557307573)1.34e-82Showinfo_outline
22complement(29365..29589)PHAGE_Entero_P1_NC_005856: InsA; -; phage(gi46401643)3.93e-46Showinfo_outline
23complement(29674..30384)Putative Endonuclease; pG12-KPC-2_110.0Showinfo_outline
24complement(30458..30859)Plasmid Maintenance Protein VagD; -0.0Showinfo_outline
25complement(30871..31101)Plasmid Maintenance Protein VagC; -0.0Showinfo_outline
2632006..32314Hypothetical Protein; pG12-KPC-2_120.0Showinfo_outline
2732342..32671Hypothetical Protein; pG12-KPC-2_130.0Showinfo_outline
2832739..33095Hypothetical Protein; pG12-KPC-2_140.0Showinfo_outline
2933102..33434Hypothetical Protein; pG12-KPC-2_150.0Showinfo_outline
3033434..34216PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; pG12-KPC-2_16; phage(gi764159894)1.80e-06Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

Viewer Options
Length: 111926 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download