Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1036427838

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|CP015991.1| Klebsiella pneumoniae strain BR plasmid pWSZBR, complete sequence. 76251, gc%: 53.33%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
136.8Kbintact1403616458-53310 info_outlinePHAGE_Salmon_SJ46_NC_031129(5)56.52%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP015991.1| Klebsiella pneumoniae strain BR plasmid pWSZBR, complete sequence. 76251, gc%: 53.33%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 44 CDS

#CDS PositionBLAST HitE-ValueSequence
221012..21776PROPHAGE_Brucel_1330: transposase, putative; A9J37_26230; phage(gi23502708)3.18e-55Showinfo_outline
3complement(21967..22155)hypothetical protein; A9J37_262350.0Showinfo_outline
4complement(22269..22853)macrolide 2'-phosphotransferase; A9J37_262400.0Showinfo_outline
5complement(22853..24090)MFS transporter; A9J37_262450.0Showinfo_outline
6complement(24087..24992)Mph(A) family macrolide 2'-phosphotransferase; A9J37_262500.0Showinfo_outline
7complement(25114..25818)PROPHAGE_Brucel_1330: transposase, putative; A9J37_26255; phage(gi23502708)1.98e-53Showinfo_outline
9complement(26033..26689)PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; A9J37_26260; phage(gi971764756)7.04e-21Showinfo_outline
11complement(26999..28546)transposase; A9J37_262650.0Showinfo_outline
12complement(28945..29784)dihydropteroate synthase; A9J37_262700.0Showinfo_outline
13complement(29778..30125)PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; A9J37_26275; phage(gi311992758)9.11e-09Showinfo_outline
14complement(30242..31087)ANT(3'') family aminoglycoside nucleotidyltransferase; A9J37_262800.0Showinfo_outline
15complement(31268..31741)PHAGE_Bacill_Blue_NC_031056: hypothetical protein; A9J37_26285; phage(gi100007)1.13e-25Showinfo_outline
16complement(31874..32326)rifampin ADP-ribosylating transferase ARR-2; A9J37_262900.0Showinfo_outline
17complement(32411..33043)type B chloramphenicol O-acetyltransferase; A9J37_262950.0Showinfo_outline
18complement(33181..34011)class D beta-lactamase; A9J37_263000.0Showinfo_outline
19complement(34142..34741)PHAGE_Staphy_SPbeta_like_NC_029119: bifunctional AAC/APH; A9J37_26305; phage(gi985761240)4.91e-16Showinfo_outline
2034852..35619integrase; A9J37_263100.0Showinfo_outline
21complement(35673..36377)PROPHAGE_Brucel_1330: transposase, putative; A9J37_26315; phage(gi23502708)1.98e-53Showinfo_outline
22complement(36414..36992)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A9J37_26320; phage(gi100060)5.24e-09Showinfo_outline
2437236..37463hypothetical protein; A9J37_263250.0Showinfo_outline
2537500..38204PROPHAGE_Brucel_1330: transposase, putative; A9J37_26330; phage(gi23502708)1.98e-53Showinfo_outline
2739028..39306hypothetical protein; A9J37_263350.0Showinfo_outline
2839417..39842PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; A9J37_26340; phage(gi162135127)1.17e-25Showinfo_outline
2939970..40125hypothetical protein; A9J37_263450.0Showinfo_outline
3040171..40467transcriptional repressor protein KorC; A9J37_263500.0Showinfo_outline
3140520..41452PHAGE_Staphy_Pvl108_NC_008689: putative transposase; A9J37_26355; phage(gi119443708)1.17e-06Showinfo_outline
32complement(41702..42583)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A9J37_26360; phage(gi100066)2.88e-94Showinfo_outline
33complement(42859..43839)PHAGE_Spirop_SkV1_CR2_3x_NC_009987: hypothetical protein; A9J37_26365; phage(gi160688404)1.73e-09Showinfo_outline
34complement(43962..44363)PHAGE_Sodali_phiSG1_NC_007902: resolvase; A9J37_26370; phage(gi89886020)2.47e-15Showinfo_outline
35complement(44433..45149)PROPHAGE_Brucel_1330: transposase, putative; A9J37_26375; phage(gi23502708)2.91e-53Showinfo_outline
38complement(45416..45583)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; A9J37_26380; phage(gi100062)4.93e-33Showinfo_outline
3945572..46132PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; A9J37_26385; phage(gi100061)3.52e-83Showinfo_outline
4046136..49102PROPHAGE_Xantho_33913: Tn5041 transposase; A9J37_26390; phage(gi21231545)1.63e-46Showinfo_outline
41complement(49135..49389)PHAGE_Entero_HK022_NC_002166: IS903 transposase; A9J37_26395; phage(gi9634149)7.50e-38Showinfo_outline
4249949..50335hypothetical protein; A9J37_264000.0Showinfo_outline
43complement(50475..51398)PHAGE_Entero_HK022_NC_002166: IS903 transposase; A9J37_26405; phage(gi9634149)0.0Showinfo_outline
Klebsiella pneumoniae strain BR plasmid pWSZBR, complete sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 76251 bps
Phages: 1
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download