Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1036435769

GenInfo (GI) Number: 0000000000

Download Results: 1036435769.PHASTER.zip

gi|00000000|ref|CP014649.1| Klebsiella pneumoniae strain KPNIH36 plasmid pKPN-fff, complete 133484, gc%: 52.50%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
164.5Kbintact150734477-68996 info_outlinePHAGE_Escher_phiV10_NC_007804(37)53.67%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP014649.1| Klebsiella pneumoniae strain KPNIH36 plasmid pKPN-fff, complete 133484, gc%: 52.50%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 77 CDS

#CDS PositionBLAST HitE-ValueSequence
14477..4493attL0.0Showinfo_outline
26081..7160PHAGE_Spirop_1_C74_NC_003793: putative transposase; ABA76_27540; phage(gi20514680)3.86e-09Showinfo_outline
3complement(7338..7712)hypothetical protein; ABA76_275450.0Showinfo_outline
4complement(7768..8094)PHAGE_Rhodob_RcapNL_NC_020489: hypothetical protein; ABA76_27550; phage(gi461475014)4.42e-17Showinfo_outline
5complement(8091..8819)recombinase; ABA76_275550.0Showinfo_outline
6complement(8816..9247)plasmid SOS inhibition protein B; ABA76_275600.0Showinfo_outline
7complement(9314..11350)PHAGE_Gordon_Hedwig_NC_031099: RNA polymerase binding protein; ABA76_27565; phage(gi100054)5.44e-07Showinfo_outline
8complement(11420..11668)transcriptional regulator; ABA76_275700.0Showinfo_outline
9complement(11717..12259)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; ABA76_27575; phage(gi100049)6.19e-64Showinfo_outline
10complement(13035..13598)PHAGE_Thalas_BA3_NC_009990: hypothetical protein; ABA76_27580; phage(gi160700596)2.33e-22Showinfo_outline
11complement(13646..15001)hydrolase; ABA76_275850.0Showinfo_outline
12complement(15053..15283)hypothetical protein; ABA76_275900.0Showinfo_outline
13complement(15375..15602)hypothetical protein; ABA76_275950.0Showinfo_outline
1416170..16186attR0.0Showinfo_outline
15complement(16386..16703)hypothetical protein; ABA76_276000.0Showinfo_outline
16complement(16738..16992)PHAGE_Escher_HK639_NC_016158: DNA pol III theta; ABA76_27605; phage(gi356870660)3.30e-22Showinfo_outline
1717020..17031attL0.0Showinfo_outline
18complement(17229..17654)PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; ABA76_27610; phage(gi162135127)1.98e-14Showinfo_outline
19complement(18175..18405)hypothetical protein; ABA76_276150.0Showinfo_outline
20complement(18639..20123)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; ABA76_27620; phage(gi100001)1.95e-36Showinfo_outline
2120529..20954PHAGE_Cronob_ENT39118_NC_019934: protein umuD; ABA76_27625; phage(gi431811072)6.78e-32Showinfo_outline
2220954..22225PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; ABA76_27630; phage(gi431811050)0.0Showinfo_outline
23complement(22542..23399)PROPHAGE_Escher_Sakai: putative transposase; ABA76_27635; phage(gi38704244)7.01e-172Showinfo_outline
24complement(23396..23680)PROPHAGE_Escher_Sakai: putative transposase; ABA76_27640; phage(gi38704244)4.51e-52Showinfo_outline
25complement(24094..24576)PHAGE_Escher_phiV10_NC_007804: putative lysis accessory protein; ABA76_27645; phage(gi89152449)3.17e-94Showinfo_outline
26complement(24573..25202)PHAGE_Escher_phiV10_NC_007804: putative endolysin; ABA76_27650; phage(gi89152448)2.67e-114Showinfo_outline
27complement(25192..25497)PHAGE_Escher_phiV10_NC_007804: putative holin; ABA76_27655; phage(gi89152447)4.11e-52Showinfo_outline
28complement(25484..25888)PHAGE_Escher_phiV10_NC_007804: putative integral membrane protein; ABA76_27660; phage(gi89152446)5.42e-78Showinfo_outline
29complement(26173..27114)hypothetical protein; ABA76_276650.0Showinfo_outline
30complement(27799..28539)PHAGE_Escher_phiV10_NC_007804: putative tail fiber; ABA76_27670; phage(gi89152445)2.81e-113Showinfo_outline
3128696..28992PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27675; phage(gi89152444)2.19e-35Showinfo_outline
3229307..29996PHAGE_Escher_phiV10_NC_007804: putative anti-immunity protein; ABA76_27680; phage(gi89152443)5.74e-83Showinfo_outline
33complement(30608..33373)PHAGE_Escher_phiV10_NC_007804: structural protein; ABA76_27685; phage(gi89152441)5.39e-95Showinfo_outline
34complement(33373..35283)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27690; phage(gi89152440)9.52e-43Showinfo_outline
35complement(35283..38114)PHAGE_Escher_phiV10_NC_007804: hypothetical structural protein; ABA76_27695; phage(gi89152439)0.0Showinfo_outline
36complement(38125..38664)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27700; phage(gi89152438)5.58e-88Showinfo_outline
37complement(38664..39128)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27705; phage(gi89152437)5.29e-68Showinfo_outline
38complement(39128..41626)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27710; phage(gi89152436)0.0Showinfo_outline
39complement(41626..42231)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27715; phage(gi89152435)2.29e-116Showinfo_outline
40complement(42231..42554)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27720; phage(gi89152434)2.90e-62Showinfo_outline
41complement(42605..42946)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27725; phage(gi89152433)2.65e-48Showinfo_outline
42complement(42957..43394)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27730; phage(gi89152432)1.73e-85Showinfo_outline
43complement(43448..44434)PHAGE_Escher_phiV10_NC_007804: major capsid protein; ABA76_27735; phage(gi89152431)0.0Showinfo_outline
44complement(44449..45129)PHAGE_Escher_phiV10_NC_007804: putative protease; ABA76_27740; phage(gi89152430)5.36e-118Showinfo_outline
45complement(45132..45428)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27745; phage(gi89152429)8.16e-45Showinfo_outline
46complement(45425..47107)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27750; phage(gi89152428)0.0Showinfo_outline
47complement(47122..47328)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27755; phage(gi89152427)8.70e-30Showinfo_outline
4848130..48441PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27760; phage(gi89152424)3.36e-24Showinfo_outline
49complement(48508..49983)PHAGE_Escher_phiV10_NC_007804: putative terminase large subunit; ABA76_27765; phage(gi89152423)0.0Showinfo_outline
50complement(49980..50564)PHAGE_Escher_phiV10_NC_007804: putative terminase small subunit; ABA76_27770; phage(gi155370097)1.92e-121Showinfo_outline
51complement(50642..50899)PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; ABA76_27775; phage(gi410491513)6.93e-17Showinfo_outline
52complement(50974..51312)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27780; phage(gi89152469)1.07e-48Showinfo_outline
53complement(51312..51551)PHAGE_Escher_HK639_NC_016158: hypothetical protein; ABA76_27785; phage(gi356870632)2.78e-13Showinfo_outline
54complement(51544..52212)PHAGE_Entero_cdtI_NC_009514: Valyl-tRNA synthetase; ABA76_27790; phage(gi148609417)5.91e-12Showinfo_outline
55complement(52209..52421)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27795; phage(gi89152466)5.21e-15Showinfo_outline
56complement(52592..53335)PHAGE_Burkho_BcepNY3_NC_009604: BcepNY3gp60; ABA76_27800; phage(gi149882961)8.46e-24Showinfo_outline
57complement(53332..53757)hypothetical protein; ABA76_278050.0Showinfo_outline
58complement(53754..53945)PHAGE_Salmon_IME207_NC_031924: hypothetical protein; ABA76_27810; phage(gi100023)6.73e-10Showinfo_outline
59complement(53929..54339)PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; ABA76_27815; phage(gi514051016)1.16e-15Showinfo_outline
60complement(54532..54879)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27820; phage(gi89152461)5.18e-66Showinfo_outline
61complement(54999..55784)PHAGE_Escher_phiV10_NC_007804: putative replication protein p; ABA76_27825; phage(gi155370096)6.36e-166Showinfo_outline
62complement(55781..56548)PHAGE_Escher_phiV10_NC_007804: putative primosomal protein; ABA76_27830; phage(gi89152459)3.46e-20Showinfo_outline
63complement(56548..56757)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27835; phage(gi89152475)2.24e-31Showinfo_outline
64complement(56905..57138)PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27840; phage(gi89152458)1.87e-28Showinfo_outline
6557292..57873PHAGE_Escher_phiV10_NC_007804: putative transcriptional repressor; ABA76_27845; phage(gi89152457)9.59e-51Showinfo_outline
6658240..58539PHAGE_Escher_phiV10_NC_007804: hypothetical protein; ABA76_27850; phage(gi89152455)2.29e-30Showinfo_outline
6758536..59435PHAGE_Salmon_epsilon15_NC_004775: hypothetical protein; ABA76_27855; phage(gi30387414)0.0Showinfo_outline
6859445..60467PHAGE_Salmon_epsilon15_NC_004775: RecT; ABA76_27860; phage(gi30387413)0.0Showinfo_outline
6960519..60767PHAGE_Escher_phiV10_NC_007804: putative transcriptional regulator; ABA76_27865; phage(gi89152453)2.17e-37Showinfo_outline
7060877..61170PHAGE_Escher_phiV10_NC_007804: putative transcriptional activator; ABA76_27870; phage(gi155370095)1.10e-34Showinfo_outline
7161318..61911PHAGE_Salmon_SPN1S_NC_016761: putative adenine methylase; ABA76_27875; phage(gi374531223)2.63e-139Showinfo_outline
7261908..62090hypothetical protein; ABA76_278800.0Showinfo_outline
7362087..62278cell division protein; ABA76_278850.0Showinfo_outline
74complement(62295..63545)PHAGE_Escher_phiV10_NC_007804: putative integrase; ABA76_27890; phage(gi89152450)0.0Showinfo_outline
75complement(64946..65917)PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; ABA76_27895; phage(gi33770536)9.74e-114Showinfo_outline
76complement(65917..67083)PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; ABA76_27900; phage(gi46402111)0.0Showinfo_outline
7768996..69007attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 133484 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download