Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1036435921

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|CP014650.1| Klebsiella pneumoniae strain KPNIH36 plasmid pKpQIL-6e6, complete 113639, gc%: 53.93%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
138.5Kbintact150382559-41130 info_outlinePHAGE_Salmon_SJ46_NC_031129(4)56.26%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP014650.1| Klebsiella pneumoniae strain KPNIH36 plasmid pKpQIL-6e6, complete 113639, gc%: 53.93%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 44 CDS

#CDS PositionBLAST HitE-ValueSequence
3complement(8934..10649)PHAGE_Gordon_Utz_NC_030921: hypothetical protein; ABA76_28305; phage(gi100031)1.22e-05Showinfo_outline
410759..13788PROPHAGE_Xantho_306: Tn5044 transposase; ABA76_28310; phage(gi21243163)0.0Showinfo_outline
513895..14920PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; ABA76_28315; phage(gi557307612)2.30e-44Showinfo_outline
614917..15696PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; ABA76_28320; phage(gi557307613)8.13e-78Showinfo_outline
715693..15932hypothetical protein; ABA76_283250.0Showinfo_outline
815984..16865PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; ABA76_28330; phage(gi100066)3.32e-94Showinfo_outline
9complement(17115..18434)PHAGE_Staphy_phiPV83_NC_002486: transposase; ABA76_28335; phage(gi9635722)7.29e-29Showinfo_outline
10complement(18711..19895)PROPHAGE_Shewan_MR-1: transposase, putative; ABA76_28340; phage(gi24373689)2.31e-142Showinfo_outline
1120006..20227PHAGE_Entero_HK022_NC_002166: IS903 transposase; ABA76_28345; phage(gi9634149)2.37e-14Showinfo_outline
1220399..20758hypothetical protein; ABA76_283500.0Showinfo_outline
14complement(21415..21798)hypothetical protein; ABA76_283550.0Showinfo_outline
15complement(21924..22544)PHAGE_Clostr_phiCD27_NC_011398: putative phage site-specific recombinase; ABA76_28360; phage(gi209901279)3.94e-07Showinfo_outline
16complement(22633..25530)PROPHAGE_Xantho_33913: Tn5041 transposase; ABA76_28365; phage(gi21231545)3.56e-34Showinfo_outline
1725603..26307PROPHAGE_Brucel_1330: transposase, putative; ABA76_28370; phage(gi23502708)1.98e-53Showinfo_outline
1826527..26862hypothetical protein; ABA76_283750.0Showinfo_outline
1926992..27351oxacillinase-carbenicillinase; ABA76_283800.0Showinfo_outline
2027617..27868PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; ABA76_28385; phage(gi100061)4.13e-06Showinfo_outline
2128051..28911PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; ABA76_28390; phage(gi100066)5.20e-57Showinfo_outline
22complement(29022..29432)PROPHAGE_Brucel_1330: transposase, putative; ABA76_28395; phage(gi23502708)7.58e-38Showinfo_outline
23complement(29479..30783)PROPHAGE_Brucel_1330: transposase, putative; ABA76_28400; phage(gi23501616)1.16e-33Showinfo_outline
24complement(30822..31529)EAL domain protein; ABA76_284050.0Showinfo_outline
25complement(31526..31762)mercury resistance protein; ABA76_284100.0Showinfo_outline
26complement(31759..32121)transcriptional regulator MerD; ABA76_284150.0Showinfo_outline
27complement(32139..33833)mercuric reductase; ABA76_284200.0Showinfo_outline
28complement(33885..34307)mercury transport protein MerC; ABA76_284250.0Showinfo_outline
29complement(34343..34450)hypothetical; ABA76_284300.0Showinfo_outline
30complement(34469..34972)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; ABA76_28435; phage(gi557307573)9.15e-106Showinfo_outline
31complement(34891..35166)PHAGE_Entero_P1_NC_005856: InsA; ABA76_28440; phage(gi46401643)2.42e-57Showinfo_outline
32complement(35200..35910)AAA family ATPase; ABA76_284450.0Showinfo_outline
34complement(35984..36400)twitching motility protein PilT; ABA76_284500.0Showinfo_outline
35complement(36397..36627)virulence factor; ABA76_284550.0Showinfo_outline
3636611..37045hypothetical protein; ABA76_284600.0Showinfo_outline
3737280..37486hypothetical protein; ABA76_284650.0Showinfo_outline
3837532..37840hypothetical protein; ABA76_284700.0Showinfo_outline
3937868..38197hypothetical protein; ABA76_284750.0Showinfo_outline
4038265..38621hypothetical protein; ABA76_284800.0Showinfo_outline
4138628..38960hypothetical protein; ABA76_284850.0Showinfo_outline
4238960..39742PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; ABA76_28490; phage(gi764159894)1.80e-06Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 113639 bps
Phages: 1
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download