Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1036566682

GenInfo (GI) Number: 0000000000

Download Results: 1036566682.PHASTER.zip

gi|00000000|ref|CP015132.1| Klebsiella pneumoniae strain Kpn555 plasmid pKPN-d90, complete 224457, gc%: 52.48%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
122Kbintact12019192594-214671 info_outlinePHAGE_Stx2_c_1717_NC_011357(3)54.77%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP015132.1| Klebsiella pneumoniae strain Kpn555 plasmid pKPN-d90, complete 224457, gc%: 52.48%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
1192594..193496PHAGE_Staphy_SA1_NC_027991: putative oxidoreductase; WM92_28225; phage(gi937456879)1.27e-10Showinfo_outline
2193508..194773hypothetical protein; WM92_282300.0Showinfo_outline
3194766..195386PHAGE_Synech_S_SM2_NC_015279: class II aldolase/adducin family protein; WM92_28235; phage(gi326781951)1.24e-07Showinfo_outline
4195391..196044hydroxypyruvate isomerase; WM92_282400.0Showinfo_outline
5195868..195879attL0.0Showinfo_outline
6complement(196098..196802)PROPHAGE_Brucel_1330: transposase, putative; WM92_28245; phage(gi23502708)1.98e-53Showinfo_outline
7complement(197102..197779)PROPHAGE_Escher_MG1655: IS2 transposase TnpB; WM92_28250; phage(gi16132094)1.73e-136Showinfo_outline
8complement(197827..198192)PROPHAGE_Escher_CFT073: transposase insC; WM92_28255; phage(gi26249447)3.99e-57Showinfo_outline
9198669..198941His-Xaa-Ser system protein HxsD; WM92_282600.0Showinfo_outline
10198941..200329PHAGE_Erwini_vB_EamM_Asesino_NC_031107: chaperone for long tail fiber formation; WM92_28265; phage(gi100168)9.30e-05Showinfo_outline
11200322..201434PHAGE_Campyl_CP21_NC_019507: radical SAM domain-containing protein; WM92_28270; phage(gi422935302)3.17e-07Showinfo_outline
12complement(201570..201749)hypothetical protein; WM92_282750.0Showinfo_outline
13202623..203000PHAGE_Stx2_c_1717_NC_011357: truncated transposase; WM92_28280; phage(gi209447151)2.44e-75Showinfo_outline
14202997..203344PHAGE_Stx2_c_1717_NC_011357: transposase; WM92_28285; phage(gi209447152)8.81e-76Showinfo_outline
15203394..203741PHAGE_Stx2_c_1717_NC_011357: transposase; WM92_28290; phage(gi209447153)2.47e-64Showinfo_outline
16complement(203753..204547)PROPHAGE_Xantho_33913: ISxcC1 transposase; WM92_28295; phage(gi21231060)2.15e-106Showinfo_outline
17complement(204598..204864)PROPHAGE_Salmon_LT2: transposase; WM92_28300; phage(gi16766077)4.15e-52Showinfo_outline
18204947..206142PHAGE_Stx2_c_1717_NC_011357: transposase; WM92_28305; phage(gi209447153)3.52e-114Showinfo_outline
19206210..206557PHAGE_Stx2_c_1717_NC_011357: transposase; WM92_28310; phage(gi209447153)1.02e-67Showinfo_outline
20complement(208379..210112)PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; WM92_28315; phage(gi371496158)1.53e-19Showinfo_outline
21214671..214682attR0.0Showinfo_outline
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 224457 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download