Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1114591980

GenInfo (GI) Number: 0000000000

Download Results: 1114591980.PHASTER.zip

gi|00000000|ref|CP018338.1| Klebsiella pneumoniae isolate Kp_Goe_154414 plasmid pKp_Goe_414-2, 202175, gc%: 49.52%

Download summary as .txt file: summary.txt file_download

Total: 6 prophage regions have been identified, of which 0 regions are intact, 5 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
119.2Kbincomplete2013298-19548 info_outlinePHAGE_Bacill_Shanette_NC_028983(2)49.99%Show info_outline
25.5Kbincomplete50863899-69492 info_outlinePHAGE_Entero_P1_NC_005856(2)43.08%Show info_outline
318.2Kbincomplete401173773-92053 info_outlinePHAGE_Paenib_Xenia_NC_028837(1)51.46%Show info_outline
420.8Kbincomplete6011138337-159177 info_outlinePHAGE_Sodali_phiSG1_NC_007902(1)48.41%Show info_outline
54Kbincomplete607157521-161558 info_outlinePHAGE_Entero_fiAA91_ss_NC_022750(2)53.76%Show info_outline
610.4Kbquestionable8014164625-175079 info_outlinePHAGE_Stx2_c_1717_NC_011357(3)52.21%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP018338.1| Klebsiella pneumoniae isolate Kp_Goe_154414 plasmid pKp_Goe_414-2, 202175, gc%: 49.52%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 15 CDS

#CDS PositionBLAST HitE-ValueSequence
1298..311attL0.0Showinfo_outline
27608..8192PHAGE_Bacill_CP_51_NC_025423: putative resistance protein; BB788_26595; phage(gi725949538)6.93e-23Showinfo_outline
38189..9340tellurium resistance protein TerA; BB788_266000.0Showinfo_outline
49363..9818PHAGE_Erwini_vB_EamM_ChrisDB_NC_031126: hypothetical protein; BB788_26605; phage(gi100004)8.11e-08Showinfo_outline
59842..10882PHAGE_Escher_phAPEC8_NC_020079: integral membrane protein TerC; BB788_26610; phage(gi448260482)9.23e-97Showinfo_outline
610921..11499PHAGE_Caulob_CcrColossus_NC_019406: putative TerD-like bacterial stress protein; BB788_26615; phage(gi414088275)4.99e-44Showinfo_outline
711600..12175PHAGE_Caulob_CcrColossus_NC_019406: putative TerD-like bacterial stress protein; BB788_26620; phage(gi414088275)1.85e-40Showinfo_outline
812260..13501PHAGE_Gordon_Cucurbita_NC_031029: hypothetical protein; BB788_26625; phage(gi100110)1.39e-23Showinfo_outline
9complement(13838..14485)HAD family hydrolase; BB788_266300.0Showinfo_outline
10complement(14713..14907)hypothetical protein; BB788_266350.0Showinfo_outline
1114942..15811PHAGE_Entero_HK022_NC_002166: IS903 transposase; BB788_26640; phage(gi9634149)0.0Showinfo_outline
1215892..16127DNA resolvase; BB788_266450.0Showinfo_outline
13complement(16217..17077)hypothetical protein; BB788_266500.0Showinfo_outline
14complement(17184..17800)PHAGE_Escher_pro483_NC_028943: DNA invertase; BB788_26655; phage(gi971758535)8.73e-27Showinfo_outline
1519548..19561attR0.0Showinfo_outline

Region 2, total 8 CDS

#CDS PositionBLAST HitE-ValueSequence
163899..65394PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; BB788_26940; phage(gi100158)3.00e-10Showinfo_outline
265477..65749PHAGE_Entero_P1_NC_005856: InsA; BB788_26945; phage(gi46401643)4.88e-19Showinfo_outline
365805..66165PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; BB788_26950; phage(gi557307573)7.73e-10Showinfo_outline
466230..66319PROPHAGE_Escher_MG1655: IS150 transposase B; BB788_26955; phage(gi16131429)1.45e-07Showinfo_outline
566341..66442PROPHAGE_Ralsto_GMI1000: isrso11-transposase orfb protein; BB788_26960; phage(gi17546155)2.15e-06Showinfo_outline
6complement(66512..67165)SAM-dependent methyltransferase; BB788_269650.0Showinfo_outline
767707..68338response regulator; BB788_269700.0Showinfo_outline
868569..69492PHAGE_Entero_HK022_NC_002166: IS903 transposase; BB788_26975; phage(gi9634149)0.0Showinfo_outline

Region 3, total 13 CDS

#CDS PositionBLAST HitE-ValueSequence
173773..73785attL0.0Showinfo_outline
283700..86669PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BB788_27060; phage(gi100060)0.0Showinfo_outline
386748..87752PROPHAGE_Shewan_MR-1: IS110 family transposase; BB788_27065; phage(gi24375433)7.73e-59Showinfo_outline
488038..88532DNA-binding protein; BB788_270700.0Showinfo_outline
588593..88796transcriptional regulator; BB788_270750.0Showinfo_outline
688810..89040hypothetical protein; BB788_270800.0Showinfo_outline
789234..89500hypothetical protein; BB788_270850.0Showinfo_outline
889488..89970PHAGE_Lister_vB_LmoS_293_NC_028929: hypothetical protein; BB788_27090; phage(gi971756903)1.58e-05Showinfo_outline
9complement(90240..90431)nitrite extrusion protein 2; BB788_270950.0Showinfo_outline
1090391..90756PHAGE_Pseudo_MD8_NC_031091: hypothetical protein; BB788_27100; phage(gi100010)1.82e-51Showinfo_outline
1190804..91618PROPHAGE_Escher_CFT073: insertion element IS2 transposase InsD; BB788_27105; phage(gi26249446)6.72e-99Showinfo_outline
12complement(91614..92009)PROPHAGE_Escher_MG1655: IS150 transposase B; BB788_27110; phage(gi16131429)9.51e-28Showinfo_outline
1392053..92065attR0.0Showinfo_outline

Region 4, total 13 CDS

#CDS PositionBLAST HitE-ValueSequence
1138337..138351attL0.0Showinfo_outline
2146309..147283PHAGE_Bacill_G_NC_023719: gp350; BB788_27375; phage(gi593777806)9.45e-14Showinfo_outline
3147852..148166hypothetical protein; BB788_273800.0Showinfo_outline
4148207..149028hypothetical protein; BB788_273850.0Showinfo_outline
5149025..149804PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; BB788_27390; phage(gi764159894)5.77e-07Showinfo_outline
6complement(149949..150935)PHAGE_Sodali_phiSG1_NC_007902: transposase; BB788_27395; phage(gi89886005)5.62e-107Showinfo_outline
7151191..151292transposase; BB788_274000.0Showinfo_outline
8complement(151464..152387)PHAGE_Entero_HK022_NC_002166: IS903 transposase; BB788_27405; phage(gi9634149)0.0Showinfo_outline
9complement(152453..152707)hypothetical protein; BB788_274100.0Showinfo_outline
10152896..153084hypothetical protein; BB788_274150.0Showinfo_outline
11complement(153170..153379)PROPHAGE_Escher_CFT073: transposase; BB788_27420; phage(gi26246249)6.44e-13Showinfo_outline
12153555..154421PHAGE_Brevib_Sundance_NC_028749: putative cobyrinic acid ac-diamide synthase; BB788_27425; phage(gi971482557)1.31e-06Showinfo_outline
13159177..159191attR0.0Showinfo_outline

Region 5, total 7 CDS

#CDS PositionBLAST HitE-ValueSequence
1157521..157784PROPHAGE_Xantho_33913: IS1404 transposase; BB788_27450; phage(gi21232568)2.68e-30Showinfo_outline
2157817..158182PROPHAGE_Xantho_33913: IS1477 transposase; BB788_27455; phage(gi77747809)3.31e-28Showinfo_outline
3complement(158236..159018)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; BB788_27460; phage(gi557307613)5.25e-71Showinfo_outline
4complement(159015..160037)PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; BB788_27465; phage(gi557307612)6.84e-27Showinfo_outline
5160094..160409hypothetical protein; BB788_274700.0Showinfo_outline
6160460..160717PROPHAGE_Ralsto_GMI1000: isrso12-transposase orfa protein; BB788_27475; phage(gi17546157)2.58e-41Showinfo_outline
7160806..161558PROPHAGE_Ralsto_GMI1000: ISRSO12-transposase ORFB protein; BB788_27480; phage(gi17546158)2.78e-105Showinfo_outline

Region 6, total 14 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(164625..165635)PHAGE_Salmon_SSU5_NC_018843: putative replication protein RepA; BB788_27500; phage(gi410491479)3.35e-116Showinfo_outline
2complement(166161..166409)hypothetical protein; BB788_275050.0Showinfo_outline
3166365..167531PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; BB788_27510; phage(gi46402111)0.0Showinfo_outline
4167531..168502PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; BB788_27515; phage(gi33770536)5.31e-114Showinfo_outline
5168652..169053hypothetical protein; BB788_275200.0Showinfo_outline
6complement(169444..169672)plasmid stabilization protein; BB788_275250.0Showinfo_outline
7complement(169751..169933)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; BB788_27530; phage(gi431811050)2.36e-12Showinfo_outline
8170130..170570PHAGE_Stx2_c_1717_NC_011357: truncated transposase; BB788_27535; phage(gi209447151)2.09e-12Showinfo_outline
9170567..170917PHAGE_Stx2_c_1717_NC_011357: transposase; BB788_27540; phage(gi209447152)1.52e-49Showinfo_outline
10170948..172540PHAGE_Stx2_c_1717_NC_011357: transposase; BB788_27545; phage(gi209447153)0.0Showinfo_outline
11172685..172849PROPHAGE_Escher_CFT073: transposase insC; BB788_27550; phage(gi26250372)4.85e-32Showinfo_outline
12complement(172868..173836)PROPHAGE_Escher_CFT073: transposase; BB788_27555; phage(gi26248352)7.33e-10Showinfo_outline
13174004..174216PROPHAGE_Escher_CFT073: transposase insC; BB788_27560; phage(gi26251004)6.13e-32Showinfo_outline
14174213..175079PROPHAGE_Escher_MG1655: IS2 transposase TnpB; BB788_27565; phage(gi16132094)2.10e-178Showinfo_outline
Klebsiella pneumoniae isolate Kp_Goe_154414 plasmid pKp_Goe_414-2
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 202175 bps
Phages: 6
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download