Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1114592495

GenInfo (GI) Number: 0000000000

Download Results: 1114592495.PHASTER.zip

gi|00000000|ref|CP018341.1| Klebsiella pneumoniae isolate Kp_Goe_154414 plasmid pKp_Goe_414-4, 81641, gc%: 53.90%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 0 regions are intact, 2 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
128.1Kbincomplete602013096-41212 info_outlinePHAGE_Entero_N15_NC_001901(2)52.07%Show info_outline
26.2Kbincomplete60844732-50977 info_outlinePHAGE_Staphy_SPbeta_like_NC_029119(2)53.28%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP018341.1| Klebsiella pneumoniae isolate Kp_Goe_154414 plasmid pKp_Goe_414-4, 81641, gc%: 53.90%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 22 CDS

#CDS PositionBLAST HitE-ValueSequence
113096..13109attL0.0Showinfo_outline
2complement(25262..26002)PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; BB788_29615; phage(gi971821285)2.88e-06Showinfo_outline
3complement(26069..26554)hypothetical protein; BB788_296200.0Showinfo_outline
4complement(26639..26887)PHAGE_Erwini_PEp14_NC_016767: hypothetical protein; BB788_29625; phage(gi374531851)3.70e-11Showinfo_outline
527672..28730hypothetical protein; BB788_296300.0Showinfo_outline
628723..28932PHAGE_Burkho_KS14_NC_015273: gp43; BB788_29635; phage(gi327198312)5.96e-11Showinfo_outline
729004..29288hypothetical protein; BB788_296400.0Showinfo_outline
8complement(29428..30069)hypothetical protein; BB788_296450.0Showinfo_outline
930305..30634PHAGE_Entero_N15_NC_001901: gp49; BB788_29650; phage(gi9630516)6.92e-24Showinfo_outline
1030615..30896PHAGE_Klebsi_phiKO2_NC_005857: Gp48; BB788_29655; phage(gi46402134)6.04e-16Showinfo_outline
11complement(31043..31576)PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; BB788_29660; phage(gi431811050)4.83e-59Showinfo_outline
1231669..32259hypothetical protein; BB788_296650.0Showinfo_outline
1332396..32968PHAGE_Ralsto_RSM3_NC_011399: hypothetical protein; BB788_29670; phage(gi209901327)5.91e-26Showinfo_outline
1433005..34396ISKra4 family transposase; BB788_296750.0Showinfo_outline
1534429..34857PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; BB788_29680; phage(gi169936026)1.20e-28Showinfo_outline
16complement(35176..35832)PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; BB788_29685; phage(gi971764756)5.37e-16Showinfo_outline
1736200..36595PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; BB788_29690; phage(gi17546153)1.87e-58Showinfo_outline
1836634..37380PROPHAGE_Escher_CFT073: insertion element IS2 transposase InsD; BB788_29695; phage(gi26249446)1.15e-120Showinfo_outline
19complement(37429..38286)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BB788_29700; phage(gi100066)2.99e-55Showinfo_outline
20complement(38351..39454)cell division protein FtsI; BB788_297050.0Showinfo_outline
2139389..39402attR0.0Showinfo_outline
22complement(39461..41212)PROPHAGE_Xantho_33913: Tn5041 transposase; BB788_29710; phage(gi21231545)1.32e-47Showinfo_outline

Region 2, total 10 CDS

#CDS PositionBLAST HitE-ValueSequence
144732..44745attL0.0Showinfo_outline
244795..45499PROPHAGE_Brucel_1330: transposase, putative; BB788_29735; phage(gi23502708)1.98e-53Showinfo_outline
3complement(45643..46284)PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; BB788_29740; phage(gi937456276)4.24e-69Showinfo_outline
4complement(46434..46934)hypothetical protein; BB788_297450.0Showinfo_outline
546951..46964attR0.0Showinfo_outline
647014..47718PROPHAGE_Brucel_1330: transposase, putative; BB788_29750; phage(gi23502708)1.98e-53Showinfo_outline
7complement(47664..47777)AraC family transcriptional regulator; BB788_297550.0Showinfo_outline
847728..49536PROPHAGE_Xantho_33913: Tn5041 transposase; BB788_29760; phage(gi21231545)4.49e-47Showinfo_outline
949615..50619PROPHAGE_Shewan_MR-1: IS110 family transposase; BB788_29765; phage(gi24375433)1.05e-58Showinfo_outline
10complement(50801..50977)PHAGE_Salmon_epsilon15_NC_004775: integrase; BB788_29770; phage(gi30387406)2.12e-10Showinfo_outline
Klebsiella pneumoniae isolate Kp_Goe_154414 plasmid pKp_Goe_414-4
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 81641 bps
Phages: 2
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download