Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1120806336

GenInfo (GI) Number: 0000000000

Download Results: 1120806336.PHASTER.zip

gi|00000000|ref|CP018702.1| Klebsiella pneumoniae strain Kp_Goe_827024 plasmid pKp_Goe_024-1, 246753, gc%: 45.12%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
113.2Kbincomplete2021230688-243916 info_outlinePHAGE_Escher_Av_05_NC_025830(2)45.53%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP018702.1| Klebsiella pneumoniae strain Kp_Goe_827024 plasmid pKp_Goe_024-1, 246753, gc%: 45.12%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
1230688..231557PHAGE_Marino_P12026_NC_018269: putative DNA modification methylase; BB784_28870; phage(gi399528347)1.94e-14Showinfo_outline
2231611..231931PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BB784_28875; phage(gi410491515)7.00e-36Showinfo_outline
3232012..232326hypothetical protein; BB784_288800.0Showinfo_outline
4232447..232698PHAGE_Entero_mEp460_NC_019716: hypothetical protein; BB784_28885; phage(gi428782346)8.97e-33Showinfo_outline
5232864..233082PHAGE_Vibrio_pYD38_A_NC_021534: hypothetical protein; BB784_28890; phage(gi514051015)8.75e-28Showinfo_outline
6233175..233672PHAGE_Escher_Av_05_NC_025830: hypothetical protein; BB784_28895; phage(gi730985103)8.74e-37Showinfo_outline
7233669..233857hypothetical protein; BB784_289000.0Showinfo_outline
8234335..234562PHAGE_Salmon_II_E1_NC_010495: hypothetical protein; BB784_28905; phage(gi170676296)1.21e-14Showinfo_outline
9234559..235203PHAGE_Pseudo_phi2_NC_030931: hypothetical protein; BB784_28910; phage(gi100004)1.17e-07Showinfo_outline
10235204..235527PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; BB784_28915; phage(gi327198613)3.37e-19Showinfo_outline
11235620..236006PHAGE_Entero_mEp390_NC_019721: hypothetical protein; BB784_28920; phage(gi428782696)1.68e-11Showinfo_outline
12236702..236923PHAGE_Salmon_SSU5_NC_018843: hypothetical protein; BB784_28925; phage(gi410491522)5.09e-18Showinfo_outline
13237261..237743PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; BB784_28930; phage(gi966201466)2.06e-07Showinfo_outline
14237740..238423PHAGE_Klebsi_vB_KpnM_KB57_NC_028659: hypothetical protein; BB784_28935; phage(gi966203508)6.15e-28Showinfo_outline
15238426..238611hypothetical protein; BB784_289400.0Showinfo_outline
16238881..239153PHAGE_Escher_ECML_117_NC_025441: hypothetical protein; BB784_28945; phage(gi725950145)4.82e-19Showinfo_outline
17239728..239913hypothetical protein; BB784_289500.0Showinfo_outline
18239923..240372phage tail protein; BB784_289550.0Showinfo_outline
19240442..241050PHAGE_Caulob_CcrColossus_NC_019406: putative methyltransferase; BB784_28960; phage(gi414088386)7.24e-34Showinfo_outline
20241336..241791hypothetical protein; BB784_289650.0Showinfo_outline
21242675..243916PHAGE_Entero_mEp390_NC_019721: hypothetical protein; BB784_28970; phage(gi428782698)2.63e-06Showinfo_outline
Klebsiella pneumoniae strain Kp_Goe_827024 plasmid pKp_Goe_024-1
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 246753 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download