Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1120806588

GenInfo (GI) Number: 0000000000

Download Results: 1120806588.PHASTER.zip

gi|00000000|ref|CP018703.1| Klebsiella pneumoniae strain Kp_Goe_827024 plasmid pKp_Goe_024-5, 66149, gc%: 52.73%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
157Kbintact120603736-60768 info_outlinePHAGE_Klebsi_phiKO2_NC_005857(48)52.63%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP018703.1| Klebsiella pneumoniae strain Kp_Goe_827024 plasmid pKp_Goe_024-5, 66149, gc%: 52.73%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 60 CDS

#CDS PositionBLAST HitE-ValueSequence
13736..5658PHAGE_Klebsi_phiKO2_NC_005857: protelomerase; BB784_29035; phage(gi46402112)0.0Showinfo_outline
2complement(5713..6492)PHAGE_Klebsi_phiKO2_NC_005857: Gp27; BB784_29040; phage(gi46402113)7.01e-152Showinfo_outline
3complement(6489..6719)PHAGE_Klebsi_phiKO2_NC_005857: Gp28; BB784_29045; phage(gi46402114)5.05e-42Showinfo_outline
4complement(6716..7191)PHAGE_Entero_N15_NC_001901: gp32; BB784_29050; phage(gi9630502)1.02e-08Showinfo_outline
57547..8542hypothetical protein; BB784_290550.0Showinfo_outline
6complement(8569..9033)hypothetical protein; BB784_290600.0Showinfo_outline
7complement(9193..9528)PHAGE_Entero_N15_NC_001901: gp35; BB784_29065; phage(gi9630505)1.05e-49Showinfo_outline
8complement(9515..9721)hypothetical protein; BB784_290700.0Showinfo_outline
9complement(9714..13718)PHAGE_Klebsi_phiKO2_NC_005857: Gp35; BB784_29075; phage(gi46402121)0.0Showinfo_outline
10complement(13969..14577)PHAGE_Klebsi_phiKO2_NC_005857: Gp36; BB784_29080; phage(gi46402122)1.06e-138Showinfo_outline
1114658..14867PHAGE_Klebsi_phiKO2_NC_005857: Gp37; BB784_29085; phage(gi46402123)5.70e-41Showinfo_outline
1214857..15594PHAGE_Klebsi_phiKO2_NC_005857: lambda Q-like transcription antiterminator; BB784_29090; phage(gi46402124)2.83e-157Showinfo_outline
1315482..15796PHAGE_Yersin_PY54_NC_005069: hypothetical protein; BB784_29095; phage(gi33770552)4.79e-28Showinfo_outline
1415801..16004PHAGE_Yersin_PY54_NC_005069: hypothetical protein; BB784_29100; phage(gi33770555)2.34e-10Showinfo_outline
1516036..16614PHAGE_Klebsi_phiKO2_NC_005857: Gp39; BB784_29105; phage(gi46402125)2.22e-124Showinfo_outline
1616817..17218PHAGE_Klebsi_phiKO2_NC_005857: Gp41; BB784_29110; phage(gi46402127)1.79e-12Showinfo_outline
1717215..17460PHAGE_Escher_HK639_NC_016158: hypothetical protein; BB784_29115; phage(gi356870658)2.62e-36Showinfo_outline
1817453..17779PHAGE_Klebsi_phiKO2_NC_005857: Gp45; BB784_29120; phage(gi46402131)5.13e-62Showinfo_outline
1917800..18027PHAGE_Klebsi_phiKO2_NC_005857: Gp46; BB784_29125; phage(gi46402132)1.91e-34Showinfo_outline
2018131..18334PHAGE_Klebsi_phiKO2_NC_005857: Gp47; BB784_29130; phage(gi46402133)4.57e-29Showinfo_outline
21complement(18379..18666)PHAGE_Klebsi_phiKO2_NC_005857: Gp48; BB784_29135; phage(gi46402134)1.50e-61Showinfo_outline
22complement(18666..18974)PHAGE_Klebsi_phiKO2_NC_005857: Gp49; BB784_29140; phage(gi46402135)2.48e-63Showinfo_outline
2319145..19366PHAGE_Klebsi_phiKO2_NC_005857: Gp50; BB784_29145; phage(gi46402136)4.18e-38Showinfo_outline
2419378..19605PHAGE_Klebsi_phiKO2_NC_005857: Gp51; BB784_29150; phage(gi46402137)3.56e-41Showinfo_outline
2519923..20984PHAGE_Klebsi_phiKO2_NC_005857: putative DNA adenine methylase; BB784_29155; phage(gi46402138)0.0Showinfo_outline
2621043..21354PHAGE_Klebsi_phiKO2_NC_005857: Gp53; BB784_29160; phage(gi46402139)6.25e-59Showinfo_outline
2721351..21842PHAGE_Klebsi_phiKO2_NC_005857: Gp54; BB784_29165; phage(gi46402140)1.73e-108Showinfo_outline
2821859..22335PHAGE_Klebsi_phiKO2_NC_005857: Gp55; BB784_29170; phage(gi46402141)1.68e-86Showinfo_outline
2922589..22888PHAGE_Klebsi_phiKO2_NC_005857: Gp58; BB784_29175; phage(gi46402144)7.87e-69Showinfo_outline
3023058..24119PHAGE_Klebsi_phiKO2_NC_005857: Gp59; BB784_29180; phage(gi46402145)7.26e-47Showinfo_outline
3124103..24465PHAGE_Klebsi_phiKO2_NC_005857: Gp60; BB784_29185; phage(gi46402146)4.43e-79Showinfo_outline
3224462..24746PHAGE_Klebsi_phiKO2_NC_005857: Gp61; BB784_29190; phage(gi46402147)1.49e-07Showinfo_outline
3324746..25174PHAGE_Klebsi_phiKO2_NC_005857: Gp62; BB784_29195; phage(gi46402148)2.21e-55Showinfo_outline
3425260..25460PHAGE_Klebsi_phiKO2_NC_005857: Gp64; BB784_29200; phage(gi46402150)5.51e-38Showinfo_outline
3525591..26025PHAGE_Klebsi_phiKO2_NC_005857: putative small terminase subunit; BB784_29205; phage(gi46402087)7.67e-100Showinfo_outline
3626060..27769PHAGE_Klebsi_phiKO2_NC_005857: putative large terminase subunit; BB784_29210; phage(gi46402088)0.0Showinfo_outline
3727763..27942PHAGE_Klebsi_phiKO2_NC_005857: Gp3; BB784_29215; phage(gi46402089)3.14e-24Showinfo_outline
3827942..29201PHAGE_Klebsi_phiKO2_NC_005857: putative portal protein; BB784_29220; phage(gi46402090)0.0Showinfo_outline
3929238..30158PHAGE_Klebsi_phiKO2_NC_005857: putative head maturation protease; BB784_29225; phage(gi46402091)0.0Showinfo_outline
4030236..31522PHAGE_Klebsi_phiKO2_NC_005857: major capsid head protein precursor; BB784_29230; phage(gi46402092)0.0Showinfo_outline
4131581..31868PHAGE_Klebsi_phiKO2_NC_005857: Gp7; BB784_29235; phage(gi46402093)1.43e-28Showinfo_outline
4231849..32166PHAGE_Klebsi_phiKO2_NC_005857: Gp8; BB784_29240; phage(gi46402094)1.38e-62Showinfo_outline
4332163..32501PHAGE_Klebsi_phiKO2_NC_005857: Gp9; BB784_29245; phage(gi46402095)8.25e-72Showinfo_outline
4432482..32871PHAGE_Klebsi_phiKO2_NC_005857: Gp10; BB784_29250; phage(gi46402096)2.66e-76Showinfo_outline
4532868..33269PHAGE_Klebsi_phiKO2_NC_005857: Gp11; BB784_29255; phage(gi46402097)8.10e-87Showinfo_outline
4633301..33762PHAGE_Klebsi_phiKO2_NC_005857: major tail shaft subunit; BB784_29260; phage(gi46402098)2.21e-88Showinfo_outline
4733820..34185PHAGE_Klebsi_phiKO2_NC_005857: putative tail assembly chaperone; BB784_29265; phage(gi46402099)8.81e-73Showinfo_outline
4834206..34418PHAGE_Klebsi_phiKO2_NC_005857: putative tail assembly chaperone; BB784_29270; phage(gi46402100)1.06e-33Showinfo_outline
4934418..37774PHAGE_Klebsi_phiKO2_NC_005857: putative tapemeasure protein; BB784_29275; phage(gi46402101)0.0Showinfo_outline
5037774..38112PHAGE_Klebsi_phiKO2_NC_005857: Gp16; BB784_29280; phage(gi46402102)1.68e-72Showinfo_outline
5138109..38864PHAGE_Klebsi_phiKO2_NC_005857: Gp17; BB784_29285; phage(gi46402103)1.84e-156Showinfo_outline
5238866..39576PHAGE_Klebsi_phiKO2_NC_005857: Gp18; BB784_29290; phage(gi46402104)2.10e-162Showinfo_outline
5340160..40450PHAGE_Pseudo_YMC11/02/R656_NC_028657: hypothetical protein; BB784_29295; phage(gi966197843)3.69e-12Showinfo_outline
5440467..41060PHAGE_Klebsi_phiKO2_NC_005857: Gp20; BB784_29300; phage(gi46402106)1.04e-112Showinfo_outline
5541123..53827PHAGE_Klebsi_phiKO2_NC_005857: Gp21; BB784_29305; phage(gi46402107)0.0Showinfo_outline
5653896..55395PHAGE_Klebsi_Sushi_NC_028774: tail fiber; BB784_29310; phage(gi971742192)7.61e-20Showinfo_outline
57complement(55474..56438)PHAGE_Klebsi_phiKO2_NC_005857: Gp24; BB784_29315; phage(gi46402110)0.0Showinfo_outline
58complement(56441..57603)PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; BB784_29320; phage(gi46402111)1.52e-169Showinfo_outline
5958637..59800PHAGE_Klebsi_phiKO2_NC_005857: plasmid partition protein SopA; BB784_29325; phage(gi46402111)0.0Showinfo_outline
6059803..60768PHAGE_Klebsi_phiKO2_NC_005857: Gp24; BB784_29330; phage(gi46402110)0.0Showinfo_outline
Klebsiella pneumoniae strain Kp_Goe_827024 plasmid pKp_Goe_024-5
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 66149 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download