Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1120818617

GenInfo (GI) Number: 0000000000

Download Results:

gi|00000000|ref|CP018718.1| Klebsiella pneumoniae strain Kp_Goe_152021 plasmid pKp_Goe_021-4, 61010, gc%: 51.36%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
116Kbquestionable90211352-17387 info_outlinePHAGE_Salmon_SJ46_NC_031129(5)49.33%Show info_outline
221.3Kbincomplete602317402-38786 info_outlinePHAGE_Salmon_SJ46_NC_031129(6)50.84%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|CP018718.1| Klebsiella pneumoniae strain Kp_Goe_152021 plasmid pKp_Goe_021-4, 61010, gc%: 51.36%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
11352..1924PHAGE_Ralsto_RSM3_NC_011399: hypothetical protein; BB786_30515; phage(gi209901327)5.91e-26Showinfo_outline
21961..3352ISKra4 family transposase; BB786_305200.0Showinfo_outline
33376..3813PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; BB786_30525; phage(gi169936026)1.19e-28Showinfo_outline
4complement(4132..4788)PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; BB786_30530; phage(gi971764756)5.37e-16Showinfo_outline
55156..5551PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; BB786_30535; phage(gi17546153)1.87e-58Showinfo_outline
65509..5886PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; BB786_30540; phage(gi24111655)1.25e-39Showinfo_outline
7complement(6034..6894)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BB786_30545; phage(gi100066)5.20e-57Showinfo_outline
8complement(7077..7634)PHAGE_Salisa_1_NC_017983: hypothetical protein; BB786_30550; phage(gi388570712)1.21e-29Showinfo_outline
97798..8010hypothetical protein; BB786_305550.0Showinfo_outline
108198..9460PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BB786_30560; phage(gi100067)3.30e-53Showinfo_outline
119441..9563hypothetical protein; BB786_305650.0Showinfo_outline
129716..10591PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BB786_30570; phage(gi100066)1.60e-170Showinfo_outline
13complement(10638..10970)tryptophan synthase subunit beta like protein; BB786_305750.0Showinfo_outline
1410987..13779PROPHAGE_Xantho_33913: Tn5041 transposase; BB786_30580; phage(gi21231545)6.23e-31Showinfo_outline
15complement(13804..14064)hypothetical protein; BB786_305850.0Showinfo_outline
1614288..14467hypothetical protein; BB786_305900.0Showinfo_outline
17complement(14499..14996)PROPHAGE_Xantho_33913: IS1477 transposase; BB786_30595; phage(gi77747809)7.98e-66Showinfo_outline
18complement(15060..15206)PROPHAGE_Xantho_33913: IS1477 transposase; BB786_30600; phage(gi77747809)1.93e-09Showinfo_outline
19complement(15356..15617)transposase; BB786_306050.0Showinfo_outline
20complement(16008..16226)hypothetical protein; BB786_306100.0Showinfo_outline
21complement(16419..17387)PHAGE_Entero_HK022_NC_002166: IS903 transposase; BB786_30615; phage(gi9634149)0.0Showinfo_outline

Region 2, total 25 CDS

#CDS PositionBLAST HitE-ValueSequence
2complement(22642..23892)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BB786_30665; phage(gi100067)3.77e-53Showinfo_outline
323917..24621PROPHAGE_Brucel_1330: transposase, putative; BB786_30670; phage(gi23502708)1.16e-53Showinfo_outline
424669..26984PROPHAGE_Xantho_33913: Tn5041 transposase; BB786_30675; phage(gi21231545)1.07e-38Showinfo_outline
5complement(27011..27292)PHAGE_Entero_HK022_NC_002166: IS903 transposase; BB786_30680; phage(gi9634149)4.07e-48Showinfo_outline
727528..27605hypothetical protein; BB786_306850.0Showinfo_outline
8complement(27605..27904)hypothetical protein; BB786_306900.0Showinfo_outline
9complement(28177..28485)PHAGE_Burkho_KS14_NC_015273: gp37; BB786_30695; phage(gi327198306)3.26e-08Showinfo_outline
10complement(28495..28998)PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; BB786_30700; phage(gi557307573)4.57e-109Showinfo_outline
11complement(28917..29192)PHAGE_Entero_P1_NC_005856: InsA; BB786_30705; phage(gi46401643)1.90e-60Showinfo_outline
12complement(29226..29351)hypothetical protein; BB786_307100.0Showinfo_outline
13complement(29344..30828)PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; BB786_30715; phage(gi100001)4.60e-37Showinfo_outline
14complement(30828..31079)hypothetical protein; BB786_307200.0Showinfo_outline
15complement(31144..31259)hypothetical protein; BB786_307250.0Showinfo_outline
1631237..31668PHAGE_Cronob_ENT39118_NC_019934: protein umuD; BB786_30730; phage(gi431811072)5.32e-34Showinfo_outline
1731668..32939PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; BB786_30735; phage(gi431811050)0.0Showinfo_outline
18complement(33021..33995)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BB786_30740; phage(gi100010)1.82e-116Showinfo_outline
19complement(33995..35200)PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; BB786_30745; phage(gi100009)0.0Showinfo_outline
2035615..35884hypothetical protein; BB786_307500.0Showinfo_outline
21complement(36061..36783)PHAGE_Burkho_KS14_NC_015273: gp37; BB786_30755; phage(gi327198306)1.47e-17Showinfo_outline
22complement(36792..37159)hypothetical protein; BB786_307600.0Showinfo_outline
2337462..37566hypothetical protein; BB786_307650.0Showinfo_outline
2437695..37952hypothetical protein; BB786_307700.0Showinfo_outline
25complement(38010..38786)PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; BB786_30775; phage(gi764159894)5.08e-08Showinfo_outline
Klebsiella pneumoniae strain Kp_Goe_152021 plasmid pKp_Goe_021-4
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 61010 bps
Phages: 2
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Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download