Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1274853786 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1274853786.PHASTER.zip
gi|00000000|ref|CP024538.1| Klebsiella pneumoniae strain KSB1_9D plasmid unnamed3, complete 89345, gc%: 50.68%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 17.6Kb | intact | 100 | 23 | 1023-18705 info_outline | PHAGE_Staphy_SPbeta_like_NC_029119(3) | 52.15% | Show info_outline |
Region DNA
>1 1023-18705 GGATGAGAACCTGTTAAATGTGTGTTTTTATCTGTATATACTTACGCACCTTCCCACTTCAACACACCTT TTTGGATAGAAGTGAGAAGCTATCCCGCTTCTCACCACCTTTTACCAAATTTGTCTCACCGACTCCCCAC TTCGACACACCGAAGATTCAAAGGCTTCCCACTACGCCCCACTTTTTGCTTCACGCGGTCATAACTGGTT GATACTACCCTCCCTAAAGGTAGCCTGGAGTTGAAAGCCGCATTATGTGGTTCTATGGGGATTTCGGATA AAGGCACCACTTTGCCATCTTGTTATCCTGTTATCTTGTTATCTTGTTATATTGTTATCCTAACATCTTA CTAATTTGTTAAGATTCAAAGATAATTCAATTATAAATCATGTAGTTAACAACTTAACAAGATATTAACT TAATAAAGGCATTGCAATATTGTCGCCTGTTTGGCAATATTAAGTTGTTAACTTAACAACTTAATATGAG GCTATGATGATAATAGTATTGGGTAGTCAAAAGGGTGGGGTTGGTAAAAGTACACTGGCGGTATCTATAG CTGCGTATCTGATGTCACTGGGCAATAGAGTGATCATTGTCGACGCAGATGACCAGAAATCTGTATTGAC CTGGTACAACAATCGTCCTGAAGATCTTCCCCATATTCCGGTTACTGGCGCAACAGGCAACATCAAAGCC ATGCTAAAGGAACACGAGAAATCTTATGACTTTGTCATCGCAGACTGTGCTGGCCGCGACAGTGCAGAAA TGCGTAGTGGGTTGATGGCCGCTGACGTATTCATTTCTCCGTTGCGGCCTTCTCAGATGGACCTGGATGT AGTGCCTCATACATGCTCTGTTTTTACAGCAGCAAAAGATTTTAATGAGGACGTCCGGGGATATCTCGTT TTAAACATGACGCCCACGAACATGTTTGTCAATGAAGCAAATCAGGCAGCTGACGTACTCAAGGATTATC CTGAAATGTGTCTGGCTAGCTCCCGAGTTTGTGATCGAAAAGCGCATCGAGATGCCTGGGCAGAATCAAT GACAATTTTTGAAACGCAAAATGACAAAGCACAACAAGAAATCGAATCGTTAGTTAAAGAGGTTATTCTG TGAGAAATAGAGCAAATACTCCATCTCGTGATGAGGCAGCGTTTATTAACGGTGGTACTGCTGGTATTGA TAATACCAAAGTGACTTCAGAGAGACCATTGGCTGTAAGTAAAGCAAAACCAGTGAGCATTTCCTTTTTT GAAGAAAACTTAAAAGACATTGATGATCTTATAACGGGTGAAATGATTTCAGGTAAAAGCAGAGTGAATC GTTCTGACGTAGTCAGGGCAGCGGTAGAGGCACTAAAAAGTTTATCAAAAACAGAGATATCCAGATTAAT CGCAGAAGCGAAACAACGATAACATCTTGTTATCTTGTTATCTTGTTATCTTGTTATCTTGTTCAGGGTG GTAACACCTTTTATATCGAGGCAACAACTTCGCGATAGTGAAAATTTGCGGATGGCCTCAGTCCTATACA TAAGGGGATATACATGAATTCAAATACTACAATCGCCTTACATTTTTCGCTTGCATTACTATTTACGTTG CTATCAGTGGCTGGTAGCAACCATGATTTAGCAGGAGTTGTATCTCAATTATTCCTTATTTTCATGGCTG CATTTTTTTTCTTTAGGGCAATGAGGGCCTTTCTGAACATCATTAATGTGATTGATAGCTGTAAAAGGTG AGGCAGGATAAGCCCCCATTAAGCTTGGACTGTTTCCCACACAAGAACTACTTTAGGTTGAAACCTGGGG TATTACCCATAGTTGACCTATGTAGATTGGTCTGGGGCTTGAAGTGGTTTACTGAATTTGGCCACCTGAA CAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTT TAAACGCGAATCCGCTCAACTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGAT GTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGGCAGGGCAAAACACCAAAAG CCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGA AAATGAAATATTAAAAAAGGCTACCGCGCTCTTGATGTCAGACTCCCTGAACAGTTCTCGATAATCGGGA AACTCAGGGCGCGTTATCCTGTGGCCACTCTCTGCCATGTGTTCGGGGTTCATCGCAGCAGCTACAAATA CTGGAAAAACCGTCCTGAAAAGCCAGACGGCAGACGGGCTGTATTACGCAGTCAGGTACTTGAACTGCAT GGCATCAGCCACGGCTCTGCCGGAGCAAGAAGCATCGCCACAATGGCAACCCGGAGAGGTTACCAGATGG GGCGCTGGCTTGCTGGCAGACTCATGAAAGAGCTGGGGCTGGTCAGTTGCCAGCAGCCGACTCACCGGTA TAAGCGTGGCGGTCATGAGCACGTTGCTATCCCGAATCATCTTGAGCGACAGTTCGCCGTAACGGAACCA AATCAGGTGTGGTGCGGTGATGTGACCTATAGTGTGCCCGGAGTTCAGGGCGGGCATGGATGCTTAAATG AACCGCGAGTCTGTCTGGAATATTGAACCGGTAACTCACGATGAGAAACCCAACAATCCCACCGGGTGTG ACGGTGGAGAACCTGAGCGGCAGTGACCTGCGGCATGCCCGCAGGGTGATGTAACCCGCTGACAACGGGG ATTGAGGCGAGATCACTAAGCCGAGATGATCCTCAAGGTTAAGTACTGAAAGGCTGAAGAACATGAACCC GTTAATCCGCCTCTGTGGGTTGAAAACGTCACCACGGCCTACGTGATCTGACAGGCCGTGCAGGAGGAAC TGGCAGTGATACGTAAGCACTGCCGGTCGAAGGTGTTTTGACATGTATGCGAAACACCGGGGCAGCAGCG TCTATCACGCTTGCGTTGCTGACTTCTGCCAACTTGCGGCAAGCAAGGATAAAGAGTGCGACGGGCAGCC TCCTCAGTATGCCTGAGTCCAGGCAGGTAAACCGGGGAAGGTCAGCGACGGATGTTAAGGGGGCATGGCT CCGATGACGCGCTGGCTGGCGGAGCTTCCGTAGTAGTCCGCGATGGGGAAAGCCCATTACATGGCGAAGG GAAGCAGTTTGAATGTGTTTGCGACGTGAATTAACTGACCTAACGAGGTGAAGACCTTTGATAATCAGCG AAATGCAACGCAAGCTTGCCACATGGGCAGCCACCGATCCGTCCCTACGGATTCAACGGCTGCTGCGTCT GATAACACAACCAGAATGGCTGGCTGAAGCGGCGCGGATCACGCTTTCATCAAAGGGGGCCCATACCCCC GGCGTTGATGGCGTGAACAAAACAATGCTACAGGCCAGACTGGCTGTTGAGCTGCAAATCCTCAGGGATG AATTACTCTCAGGCCACTACCAGCCCTTGCCCGCCAGACGGGTTTACATCCCTAAAAGCAACGGCAAACT GCGACCACTGGGTATCCCCGCGTTGCGGGATCGTATTGTTCAGCGGGCCATGCTGATGGCGATGGAGCCG ATATGGGAGAGTGATTTTCATACGCTCTCATATGGCTTCCGGCCTGAGCGCAGTGTCCACCACGCGATCC GCACGGTGAAATTACAGCTCACAGACTGTGGTGAAACCCGGGGACGCTGGGTGATTGAAGGCGACCTGTC CAGTTACTTCGACACCGTACATCATCGACTGCTGATGAAGGCTGTACGCCGCAGGATCAGTGACGCACGT TTCATGACTCTGCTGTGGAAAACCATCAAGGCGGGACATATCGATGTCGGTCTCTTTCGGGCGGCCAGTG AAGGTGTACCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATA CCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGG GGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATG ATTTTGTCCTCATCGTCAAAGGCACCAAAGCACAGGCGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCT CGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGACTAAAATCACCCATGTTAATGACGGCTTTATC TTTCTGGGGCACAGGATCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGC AGGAGAAAGCCAGAAACTTCGCCGCATCGCTGACAGCACTGTTATCAGGCAACTACAGTGAAAGCAAAGT CGATATGGCTGAACAACTCAACCGAAAACTGAAAGGCTGGGCCATGTTCTATCAGTTCGTTGATTTTAAG GCCAAAGTCTTCAGTTATATCGACCGTGTCGTGTTCTGGAAGCTGGCTCACTGGCTGGCCCGCAAATACC GTACAGGTATCGCTTCCCTGATGAGGTGGTGGTGTAAATCACCGAAACCGGGTCAGAGCAAAACGTGGGT TTTATTTGGTAAAACCAATCACGGCAAGCTCAGCGGCGAAATACTGTACCGGTTGGTGGGGCAAGGCAAG AAGCTGTTCCGCTGGCGGCTACCCGAAGGTAATCCCTATCTGAGGACGGAGACCAGAAACACGTATACAT CGCGCTTTACAGAAGTGGCAATGGCGTTCGCCAGCATTTAAATGGAGAGCCGGATGCGCTGAAAGGTGCA CGTCCGGTTCGGGGAGGAGAGGCAGGGAAATAGTCCGACTACGCCCTGCCTCTTACTCTACTCTGGACGG GTAAGCGCTGGGCGTACCTCGCCGTTGTTCTCGACCTGTTCGCAAGAAAACCAGTGGGCTGGGCCATGTC GTTCTCGCCGGACAGCAGGCTCACCATGAAAGCACTGGAAATGGCATGGGAAACCCGTGGTAAGCCAGTC GGGGTGATGTTCCACAGCGATAGTAATAATGCCGATGTCAGTCTTTACCACCACTTAGTTTGCCGTTTAA CCAGATTGGTGTGATTACTGATGCAGTGAAGACCTTCCCGCATCCTGACTCACACAGCGATCGACCTTTT GTGTCCTGCCCTGGACCCGTCGGTTGCCGGAAGCGCCTTCATGCGAGGCATCTCCTCACCGATGCGCGTG ACTCAAGAAGGGCCTGACGGCTTGTCTCGTTACTGTCCTGTCCGGGTTATCTGTCTGGAGATTCAACTCT GTTTCCTCACAGGAGCTCTGTCATGGTTGATAAAGTTACCGAAGCTGCCGTTGTGGGTGGCGTGGATACA CATAAAGATTTGCACGTTGCCGCTGTCGTAGATCAGAACAATAAAGTCCTTGGGACTCAGTATTTCTCCA CAACACGACAAGGTTACCGGCAGATGCTGGCATGGATGACCTCGTTTGGGACATTAAAGCGAATTGGTGT TGAGTGCACAGGTACCTATGGTTCCGGTTTGCTTCGTTATTTTCAGAACGCCGGGTTAGAAGTTCTTGAG GTGACTGCTCCAGACCGGATGGAGCGACGCAAACGGGGTAAAAGTGACACAATTGATGCTGAATGTGCCG CTCATGCAGCATTCTCAGGCATCAGGACAGTTACTCCCAAAACGCGTGATGGCATGATTGAGTCCCTGCG GGTATTAAAAACTTGCCGAAAAACAGCAATATCAGCCCGCAGAGTCGCTCTCCAGATTATCCATTCAAAT ATTATCTCTGCCCCGGATGAATTACGTGAACAGCTCAGAAATATGACGCGCATGCAGCTCATCAGGACCC TGGGTTCCTGGAGACCTGATGCCAGTGAATACCGCAATGTAACCAACGTTTATCGCATTTCATTAAAGTC CCTTGCCCGACGCTATCTCGAGTTACATGACGAAATCGCTGATCTGGATGTCATGATTGCGGCAATTGTC GACGAGTTGGCACCTGAGCTGATTAAACGTAATGCTATCGGATACGAAAGCGCTTCACAGTTGCTGATCA CTGCCGGAGACAATCCTCAACGGTTAAGATCAGAATCAGGATTTGCGGCACTGTGTGGTGTCAGCCCGGT CCCCGTTTCTTCTGGAAAAACGAACCGTTACCGACTTAATCGTGGTGGAGATCGTGCTGCAAATAGTGCA CTTCACATCATCGCCATCGGACGCTTACGAACTGACGCAAAAACAAAGGAATATGTCGCCAGGCGTGTAG CCGAAGGACATACAAAAATGGAAGCGATACGCTGTCTAAAGCGATATATCTCCCGCGAAGTTTACACGTT ACTGCGCAATCAAAACAGGCGGATCAACAGTATCCCGATAACAGCTTGACTCTTAGAAGGGCCTCCAAGG CAGCCATTATACGAGCAGGCAGTTCCGGCAGTTACTGTGGCGATACCGGATCAGGCAGAGTATGAGTCGG CGTGGAAACTGCTGGGATAACAGCCCAATGGAGCGCTTCTTCAGGAGTCTGAAGAACGAATGGGTGCCGG CGACGGGCTATGTAAGCTTCAGCGATGCAGCTCACGCAATAACGGACTATATCGTTGGATATTACAGCGC ACTAAGACCGCACGAATATAATGGTGGGTTACCGCCAAACGAATCAGAAAACCGATACTGGAAAAACTCT AACGCGGTGGCCAGTTTTTGTTGACCACTTCAGTTAACTTTTTTATCAACGCAACAGCTTCAGCTTCCGG CATGGCGAACTGCACACGATGGCGCGCCGCGACATCGAGCGCAAACACCTTCGTATAGACCTCCGTCGAG CTAATCGATTTGTGGCCCATCAGGCTCTGCAAAACCTTCAGTGGTATGCCGGCATACAGCATGTGCATCG CGTAGGAGTGACGGAACGTATGGGGGGTCACCGGTACTGAGAACGTCACCCCGTCGGCCGCTGCGGACTC CACCGCTTCGCTAAGCCAGGTGCGGACGGTACGGTCTGTGATCTCCCAGATGCGCGCCTTCTCCATTCGG CACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTGCACATGAACCCA TTCAAAGGCCGGCATTTTCAGCGTGACATCATTCTGTGGGCCGTACGCTGGTACTGCAAATACGGCATCA GTTACCGTGAGCTGCAGGAGATGCTGGCTGAACGCGGAGTGAATGTCGATCACTCCACGATTTACCGCTG GGTTCAGCGTTATGCGCCTGAAATGGAAAAACGGCTGCGCTGGTACTGGCGTAACCCTTCCGATCTTTGC CCGTGGCACATGGATGAAACCTACGTGAAGGTCAATGGCCGCTGGGCGTATCTGTACCGGGCCGTCGACA GCCGGGGCCGCACTGTCGATTTTTATCTCTCCTCCCGTCGTAACAGCAAAGCTGCATACCGGTTTCTGGG TAAAATCCTCAACAACGTGAAGAAGTGGCAGATCCCGCGATTCATCAACACGGATAAAGCGCCCGCCTAT GGTCGCGCGCTTGCTCTGCTCAAACGCGAAGGCCGGTGCCCGTCTGACGTTGAACACCGACAGATTAAGT ACCGGAACAACGTGATTGAATGCGATCATGGCAAACTGAAACGGATAATCGGCGCCACGCTGGGATTTAA ATCCATGAAGACGGCTTACGCCACCATCAAAGGTATTGAGGTGATGCGTGCACTACGCAAAGGCCAGGCC TCAGCATTTTATTATGGTGATCCCCTGGGCGAAATGCGCCTGGTAAGCAGAGTTTTTGAAATGTAAGGCC TTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCCGCCGAAAGTCCACTCCCGCAGA TCACGGGCACCACGGCCCGTGAAGGTCTTGTAGCCGTAAATTTCGCGCAGCGTGTCCATGTGCTGCTGAC GGGTTTGGCGCCGTGTGGCATAAGTGAGAAGCGCATCAGCCGGAACTCCAAGCTGAGCACCGACGAAGGA AAGGACTTCACGCGGGATCATCTCACCAGGAGCCAGTGCACGGCCCGGATATCGTAAGGCACAAAGTTGC AGGGCAAAGCCAATCCTGTTTTCCGGTCTGCGGCGCTGCCTAATGTTTTCCAGGTCATCATCGCCCAGCG TGTAGAACTTCAGTAGCGACAGTTCGTCCGTGGGCAGATCGAACAGCGCTGCTCGCTGCCGTTCGGTGAA AATATGGCGTCGTGACATACAAATTCGTCCCTTTTGAAGTATAGTCTGTTTTGGACAACAGCCAGCCCAT ATAAATCAGGGCGTTCCGATACAAAAATCCAGGAGGGTTCAATTGGGACATCGTGCCGCCATTTACTGCC GGGTTTCAACAGCGGATCAGTCTTGTGAACGCCAGGAATTTGATCTGCGAGCCTTCGCCGGCTGTGCCGG CTACGACGTGGTGGGAATATTTAAGGAAACAGGTTCAGGAACTAAACTCGACCGGGCCGAGCGAAAGAAA GTCCTGGCGCTTGCCCAGTCCAGACAAATTGATGCAATCCTGGTCACTGAGCTTTCCCGGTGGGGGCGCT CGACGCTCGATCTGCTCAATACGCTACGTGAACTGGAGAACTGGAAGGTTTCCGTGATAGCCATGAATGG AATGGCGTTCGATCTTTCGTCGCCGTATGGACGAATGCTGGCGACGTTTCTTTCCGGCATTGCGGAGTTT GAGCGGGATCTCATCAGCGAGCGGGTCAAGTCAGGCCTTGCTGTTGCGAAGGCACGTGGTAAGAGGCTTG GTCGTCAGGCCGGAGTGCGACCAAAATCAGACCGACTTTTGCCTAAGGTGGTTGCGATGAGGGCCGAGGG ACGCAGCTATCGCTGGATCGCACGCGAGCTCGGTATCAGCAAGAATACCGTCGCTGACATCGTGCAACGA CACAGAGCTAACGCTTAGGGTGTCATTTCGCCCTCAGCCGGAACCGACCCCGAATAGGTTTCGTCGCGGA TGTGCCAGGCTTGCAGCCAGGACAGCTTGGCGTAGGTCAGGCCGGGGCTCGACTCGGCCATCTTGGTCAG CCCGAGGTTGATCGCATCACCGAGGATTGCGGACAGCAGCAACGTCCTGTCTTTGGCCTCGGCCCCGTCC TTCAAGTGGGTGAAGTGGCGGCTGAAGCCCGTCCAGTCGTCCACGTCCATCAGCAGTTCGGTGATCTTGA TGCGCGGCAGTAACTGGCTGGTTTGGTCGATCAGCGCCTGCGCCCGATCCGGCACCGCCGCATCCAGCGG GGTGATTTTCAGCCCTGACTCGGTGAGGATGGCATCGGGCAGCTCGTTGTCCTTGGCCAGGCGGGTGACG GTGGCCAACTGCTCGTCCAGCAGCTGCAAACGCTCTTCCAGGTACTGGTCGCTGTTCGGGTTGATCGCCA GGGGCAGGGCCTGCTCGCGCTTGAGTGCGGCGAACTTCTCGGCCGGCAGCAGGTAGTCGTCGAAGTGGCA CTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTGCACATGAACCCATT CAAAGGCCGGCATTTTCAGCGTGACATCATTCTGTGGGCCGTACGCTGGTACTGCAAATACGGCATCAGT TACCGTGAGCTGCAGGAGATGCTGGCTGAACGCGGAGTGAATGTCGATCACTCCACGATTTACCGCTGGG TTCAGCGTTATGCGCCTGAAATGGAAAAACGGCTGCGCTGGTACTGGCGTAACCCTTCCGATCTTTGCCC GTGGCACATGGATGAAACCTACGTGAAGGTCAATGGCCGCTGGGCGTATCTGTACCGGGCCGTCGACAGC CGGGGCCGCACTGTCGATTTTTATCTCTCCTCCCGTCGTAACAGCAAAGCTGCATACCGGTTTCTGGGTA AAATCCTCAACAACGTGAAGAAGTGGCAGATCCCGCGATTCATCAACACGGATAAAGCGCCCGCCTATGG TCGCGCGCTTGCTCTGCTCAAACGCGAAGGCCGGTGCCCGTCTGACGTTGAACACCGACAGATTAAGTAC CGGAACAACGTGATTGAATGCGATCATGGCAAACTGAAACGGATAATCGGCGCCACGCTGGGATTTAAAT CCATGAAGACGGCTTACGCCACCATCAAAGGTATTGAGGTGATGCGTGCACTACGCAAAGGCCAGGCCTC AGCATTTTATTATGGTGATCCCCTGGGCGAAATGCGCCTGGTAAGCAGAGTTTTTGAAATGTAAGGCCTT TGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCCTTTAAGCGTGCATAATAAGCCCTA CACAAATTGGGAGTTAGACATCATGAGCAACGCAAAAACAAAGTTAGGCATCACAAAGTACAGCATCGTG ACCAACAGCAACGATTCCGTCACACTGCGCCTCATGACTGAGCATGACCTTGCGATGCTCTATGAGTGGC TAAATCGATCTCATATCGTCGAGTGGTGGGGCGGAGAAGAAGCACGCCCGACACTTGCTGACGTACAGGA ACAGTACTTGCCAAGCGTTTTAGCGCAAGAGTCCGTCACTCCATACATTGCAATGCTGAATGGAGAGCCG ATTGGGTATGCCCAGTCGTACGTTGCTCTTGGAAGCGGGGACGGACGGTGGGAAGAAGAAACCGATCCAG GAGTACGCGGAATAGACCAGTTACTGGCGAATGCATCACAACTGGGCAAAGGCTTGGGAACCAAGCTGGT TCGAGCTCTGGTTGAGTTGCTGTTCAATGATCCCGAGGTCACCAAGATCCAAACGGACCCGTCGCCGAGC AACTTGCGAGCGATCCGATGCTACGAGAAAGCGGGGTTTGAGAGGCAAGGTACCGTAACCACCCCATATG GTCCAGCCGTGTACATGGTTCAAACACGCCAGGCATTCGAGCGAACACGCAGTGATGCCTAACCCTTCCA TCGAGGGGGACGTCCAAGGGCTGGCGCCCTTGGCCGCCCCTCATGTCAAACGTTGGGCGAACCCGGAGCC TCATTAATTGTTAGCCGTTAAAATTAAGCCCTTTACCAAACCAATACTTATTATGAAAAACACAATACAT ATCAACTTCGCTATTTTTTTAATAATTGCAAATATTATCTACAGCAGCGCCAGTGCATCAACAGATATCT CTACTGTTGCATCTCCATTATTTGAAGGAACTGAAGGTTGTTTTTTACTTTACGATGCATCCACAAACGC TGAAATTGCTCAATTCAATAAAGCAAAGTGTGCAACGCAAATGGCACCAGATTCAACTTTCAAGATCGCA TTATCACTTATGGCATTTGATGCGGAAATAATAGATCAGAAAACCATATTCAAATGGGATAAAACCCCCA AAGGAATGGAGATCTGGAACAGCAATCATACACCAAAGACGTGGATGCAATTTTCTGTTGTTTGGGTTTC GCAAGAAATAACCCAAAAAATTGGATTAAATAAAATCAAGAATTATCTCAAAGATTTTGATTATGGAAAT CAAGACTTCTCTGGAGATAAAGAAAGAAACAACGGATTAACAGAAGCATGGCTCGAAAGTAGCTTAAAAA TTTCACCAGAAGAACAAATTCAATTCCTGCGTAAAATTATTAATCACAATCTCCCAGTTAAAAACTCAGC CATAGAAAACACCATAGAGAACATGTATCTACAAGATCTGGATAATAGTACAAAACTGTATGGGAAAACT GGTGCAGGATTCACAGCAAATAGAACCTTACAAAACGGATGGTTTGAAGGGTTTATTATAAGCAAATCAG GACATAAATATGTTTTTGTGTCCGCACTTACAGGAAACTTGGGGTCGAATTTAACATCAAGCATAAAAGC CAAGAAAAATGCGATCACCATTCTAAACACACTAAATTTATAAAAAATCTAATGGCAAAATCGCCCAACC CTTCAATCAAGTCGGGACGGCCAAAAGCAAGCTTTTGGCTCCCCTCGCTGGCGCTCGGCGCCCCTTATTT CAAACGTTAGACGGCAAAGTCACAGACCGCGGGATCTCTTATGACCAACTACTTTGATAGCCCCTTCAAA GGCAAGCTGCTTTCTGAGCAAGTGAAGAACCCCAATATCAAAGTTGGGCGGTACAGCTATTACTCTGGCT ACTATCATGGGCACTCATTCGATGACTGCGCACGGTATCTGTTTCCGGACCGTGATGACGTTGATAAGTT GATCATCGGTAGTTTCTGCTCTATCGGGAGTGGGGCTTCCTTTATCATGGCTGGCAATCAGGGGCATCGG TACGACTGGGCATCATCTTTCCCGTTCTTTTATATGCAGGAAGAACCTGCATTCTCAAGCGCACTCGATG CCTTCCAAAAAGCAGGTAATACTGTCATTGGCAATGACGTTTGGATCGGCTCTGAGGCAATGGTCATGCC CGGAATCAAGATCGGGCACGGTGCGGTGATAGGCAGCCGCTCGTTGGTGACAAAAGATGTGGGGCACTGT TGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCCTTACATTTCAAAAACTCTGCTTACCA GGCGCATTTCGCCCAGGGGATCACCATAATAAAATGCTGAGGCCTGGCCTTTGCGTAGTGCACGCATCAC CTCAATACCTTTGATGGTGGCGTAAGCCGTCTTCATGGATTTAAATCCCAGCGTGGCGCCGATTATCCGT TTCAGTTTGCCATGATCGCATTCAATCACGTTGTTCCGGTACTTAATCTGTCGGTGTTCAACGTCAGACG GGCACCGGCCTTCGCGTTTGAGCAGAGCAAGCGCGCGACCATAGGCGGGCGCTTTATCCGTGTTGATGAA TCGCGGGATCTGCCACTTCTTCACGTTGTTGAGGATTTTACCCAGAAACCGGTATGCAGCTTTGCTGTTA CGACGGGAGGAGAGATAAAAATCGACAGTGCGGCCCCGGCTGTCGACGGCCCGGTACAGATACGCCCAGC GGCCATTGACCTTCACGTAGGTTTCATCCATGTGCCACGGGCAAAGATCGGAAGGGTTACGCCAGTACCA GCGCAGCCGTTTTTCCATTTCAGGCGCATAACGCTGAACCCAGCGGTAAATCGTGGAGTGATCGACATTC ACTCCGCGTTCAGCCAGCATCTCCTGCAGCTCACGGTAACTGATGCCGTATTTGCAGTACCAGCGTACGG CCCACAGAATGATGTCACGCTGAAAATGCCGGCCTTTGAATGGGTTCATGTGCAGCTCCATCAGCAAAAG GGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCTCTCGATAGGTATAGTGTTTTGCAGTTT AGAGGAGATATCGCGATGCATACGCGGAAGGCAATAACGGAGGCAATTCGAAAATTAGGAGTCCAAACCG GTGACCTGTTGATGGTGCATGCCTCACTTAAAGCGATTGGTCCGGTCGAAGGAGGAGCGGAGACGGTCGT TGCCGCGTTACGCTCCGCGGTTGGGCCGACTGGCACTGTGATGGGATACGCGTCGTGGGACCGATCACCC TACGAGGAGACTCTGAATGGCGCTCGGTTGGATGACAAAGCCCGCCGTACCTGGCCGCCGTTCGATCCCG CAACGGCCGGGACTTACCGTGGGTTCGGCCTGCTGAATCAATTTCTGGTTCAAGCCCCCGGCGCGCGGCG CAGCGCGCACCCCGATGCATCGATGGTCGCGGTTGGTCCGCTAGCTGAAACGCTGACGGAGCCTCACGAA CTCGGTCACGCCTTGGGGGAAGGGTCGCCCGTCGAGCGGTTCGTCCGCCTTGGCGGGAAGGCCCTGCTGT TGGGTGCGCCGCTAAACTCCGTTACCGCATTGCACTACGCCGAGGCGGTTGCGGATATCCCCAACAAACG ATGGGTGACGTATGAGATGCCGATGCTTGGAAGAAACGGTGAAGTCGCCTGGAAAACGGCATCAGAATAC GATTCAAACGGCATTCTCGATTGCTTTGCTATCGAAGGAAAGCCGGATGCGGTCGAAACTATAGCAAATG CTTACGTGAAGCTCGGTCGCCATCGAGAAGGTGTCGTGGGCTTTGCTCAGTGCTACCTGTTCGACGCGCA GGACATCGTGACGTTCGGCGTCACCTATCTTGAGAAGCACTTCGGAGCCACTCCGATCGTGCCAGCACAC GAAGCCGCCCAGCGCTCTTGCGAGCCTTCCGGTTAGAGGCCGTCGACAATGATAATCTGGATCAACGGAC CTTTCGGCGCCGGAAAGACGACTCTCGCTGAGCGGCTGCGCGATCGGCGTCCGAAATCGCTGATCTTTGA CCCTGAGGAAATCGGGTTCGTGGTGAAAGAAACGGTCCCCATACCAGCGAGCGGAGACTATCAGGATCTC CCCTTGTGGAGGGGACTTACGATCGCTGCGGTCAGCGAGATTCGCAGGAATTACTCGCAGGACATCATCA TCCCAATGACGCTCGTGCACCCGGACTATCTGACTGAGATACTCGACGGGTTAAGGCAGATCGACGATCA GCTGCTGCACATCTTTCTGATGCTTAACGAGGACCTATTGCGTCACCGGATCTCGAACCAGACCATGCAT CCTGACCCGAATCGGAATGCGGAGATTCGAGAGTGGCGATTAGCGAATGTCGCCCGATGCTTGGCCGCAA GGGAACGGCTTCCGTCCACAACCCGTGTTCTCGATAGTGGTGCACACACCAGCGATGAACTTGCAGCGAT GGTGCTCGACAGACTCGATCAGCGCACCTGATCGCCTTAGAGCTGGCTCGGGAAATCTGCACAGCGGGGA TAAGTGGAGTTTCTGCCTGACTTCGGCTTAGATGCCGGGAACAGGAGAGACCATGACGAGACGACCGCGC CGGAACCATAGCCCGGCTTTCAAGGCGAAGGTGGCACTTGCCGCCATCCGAGGTGAGCAGACGCTGGTGG AGTTGTCCCAGCAGTTCGATGTGCACGCCAACCAGATCAAGCAATGGAAAGACCAGCTCCTTGAGGGGGC GACAGGTGTGTTCGGCGATGAAACGAAAGCGGAGCCGTCGGGTCCGACCATCGATGTCAAAACGCTGCAC GCGAAAATCGGCGAACTGACACTGGAGAACGATTTTTTATCCGGTGCGCTCGGCAAGGCGGGATTGCTGG GCGGAAAGAAATGATCGACCGCGAGCACAAGCTATCCGTCGTGCGCCAGGCGAAGCTTCTCGGCTTCAGC CGTGGCAGCGTCTACTATCTGCCTCGTCCGGTGTCTGACGGCGATCTGGCCCTTATGCGCCGGATTGACG AATTGCATCTCGACTACCCCTTTGCCGGAAGTCGGATGTTGCAAGGGCTCTTGAGAGGAGAAGGTCTGGA GACCGGGCGGCGACACGTCGCCACGCTGATGAAGAAGATGGGCATCAAGGCGATCTACCGCCGCCCGAAC ACCTCGAAACCAGCGCCAGGGCACATACGAAAGCTGGCAGTCACCCGGCCCAATCAGGTGTGGGCAATGG ACCTGACCTACATCCCCATGGCGCGGGGATTTGTCTATCTGTGCGCCGTCGTGGACTGGTTCAGCCGGAA GGTCTTGTCATGGCGGTTGTCGATCACGATGGAAGCAGCCTTCTGCATCGAGGCGGTGGAGGAGGCACTT GCCCGTCATGGCAGGCCGGAAATCTTCAATACCGACCAGGGATCGCAGTTCACCTCCATCGACTTCACCG CCGTGCTGAAGAGGTCACAGATTGCCATCTCGATGGATGGCAAGGGTGCGTGGCGAGACAATGTCTTCGT CGAGCGGCTCTGGCGTTCGATCAAATACGAGGAAGTCTACCTCCATGCCTACAAGACTGTGTCCGAGGCA CGCGCTGGCATCGCCCGATATCTGAACTTCTACAACACCAGACGCCCACATTGGCACTGTTGCAAAGTTA GCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCCTTACATTTCAAAAACTCTGCTTACCAGGCGCATTTC GCCCAGGGGATCACCATAATAAAATGCTGAGGCCTGGCCTTTGCGTAGTGCACGCATCACCTCAATACCT TTGATGGTGGCGTAAGCCGTCTTCATGGATTTAAATCCCAGCGTGGCGCCGATTATCCGTTTCAGTTTGC CATGATCGCATTCAATCACGTTGTTCCGGTACTTAATCTGTCGGTGTTCAACGTCAGACGGGCACCGGCC TTCGCGTTTGAGCAGAGCAAGCGCGCGACCATAGGCGGGCGCTTTATCCGTGTTGATGAATCGCGGGATC TGCCACTTCTTCACGTTGTTGAGGATTTTACCCAGAAACCGGTATGCAGCTTTGCTGTTACGACGGGAGG AGAGATAAAAATCGACAGTGCGGCCCCGGCTGTCGACGGCCCGGTACAGATACGCCCAGCGGCCATTGAC CTTCACGTAGGTTTCATCCATGTGCCACGGGCAAAGATCGGAAGGGTTACGCCAGTACCAGCGCAGCCGT TTTTCCATTTCAGGCGCATAACGCTGAACCCAGCGGTAAATCGTGGAGTGATCGACATTCACTCCGCGTT CAGCCAGCATCTCCTGCAGCTCACGGTAACTGATGCCGTATTTGCAGTACCAGCGTACGGCCCACAGAAT GATGTCACGCTGAAAATGCCGGCCTTTGAATGGGTTCATGTGCAGCTCCATCAGCAAAAGGGGATGATAA GTTTATCACCACCGACTATTTGCAACAGTGCCCGCTGAAAGGTCTGGTCATACATGTGATGGCGACGCAC GACACCGCTCCGTGGATCGGTCGAATGCGTGTGCTGCGCAAAAACCCAGAACCACGGCCAGGAATGCCCG GCGCGCGGATACTTCCGCTCAAGGGCGTCGGGAAGCGCAACGCCGCTGCGGCCCTCGGCCTGGTCCTTCA GCCACCATGCCCGTGCACGCGACAGCTGCTCGCGCAGGCTGGGTGCCAAGCTCTCGGGTAACATCAAGGC CCGATCCTTGGAGCCCTTGCCCTCCCGCACGATGATCGTGCCGTGATCGAAATCCAGATCCTTGACCCGC AGTTGCAAACCCTCACTGATCCGCATGCCCGTTCCATACAGAAGCTGGGCGAACAAACGATGCTCGCCTT CCAGAAAACCGAGGATGCGAACCACTTCATCCGGGGTCAGCACCACCGGCAAGCGCCGCGACGGCCGAGG TCTTCCGATCTCCTGAAGCCAGGGCAGATCCGTGCACAGCACCTTGCCGTAGAAGAACAGCAAGGCCGCC AATGCCTGACGATGCGTGGAGACCGAAACCTTGCGCTCGTTCGCCAGCCAGGACAGAAATGCCTCGACTT CGCTGCTGCCCAAGGTTGCCGGGTGACGCACACCGTGGAAACGGATGAAGGCACGAACCCAGTGGACATA AGCCTGTTCGGTTCGTAAACTGTAATGCAAGTAGCGTATGCGCTCACGCAACTGGTCCAGAACCTTGACC GAACGCAGCGGTGGTAACGGCGCAGTGGCGGTTTTCATGGCTTGTTATGACTGTTTTTTTGTACAGTCTA TGCCTCGGGCATCCAAGCAGCAAGCGCGTTACGCCGTGGGTCGATGTTTGATGTTATGGAGCAGCAACGA TGTTACGCAGCAGGGCAGTCGCCCTAAAACAAAGTTAACCCAG
Region Details
| Region | 1 |
| Region Length | 17.6Kb |
| Completeness(score) | intact(100) |
| Specific Keyword | transposase,integrase |
| Region Position | 1023-18705 |
| # tRNA | 0 |
| # Total Proteins | 23 |
| # Phage Hit Proteins | 14 |
| # Hypothetical Proteins | 2 |
| Phage + Hypothetical Protein % | 69.5% |
| # Bacterial Proteins | 7 |
| Attachment Site | yes |
| # Phage Species | 9 |
| Most Common Phage Name(hit genes count) | PHAGE_Staphy_SPbeta_like_NC_029119(3) PHAGE_Shigel_Sf6_NC_005344(2) PHAGE_Burkho_KS14_NC_015273(2) PHAGE_Shigel_SfII_NC_021857(2) PHAGE_Deep_s_D6E_NC_019544(1) PHAGE_Mycoba_Charlie_NC_023729(1) PHAGE_Halomo_phiHAP_1_NC_010342(1) PHAGE_Mycoba_Squirty_NC_026588(1) PHAGE_Burkho_phi6442_NC_009235(1) PHAGE_Bacill_BalMu_1_NC_030945(1) PHAGE_Pseudo_phi3_NC_030940(1) PHAGE_Burkho_phiE12_2_NC_009236(1) PHAGE_Brevib_Jenst_NC_028805(1) PHAGE_Brocho_BL3_NC_015254(1) PHAGE_Vibrio_VP58.5_NC_027981(1) PHAGE_Sodali_phiSG1_NC_007902(1) PHAGE_Bacill_SPbeta_NC_001884(1) PHAGE_Geobac_E2_NC_009552(1) PHAGE_Salmon_SJ46_NC_031129(1) PHAGE_Salmon_SSU5_NC_018843(1) PHAGE_Clostr_vB_CpeS_CP51_NC_021325(1) PHAGE_Mycoba_Xeno_NC_031243(1) |
| First Most Common Phage # | 3 |
| First Most Common Phage % | 13.04% |
| GC % | 52.15% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|CP024538.1| Klebsiella pneumoniae strain KSB1_9D plasmid unnamed3, complete 89345, gc%: 50.68%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 27 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 1023..1034 | attL | 0.0 | Showinfo_outline |
| 2 | 1519..2145 | PHAGE_Burkho_KS14_NC_015273: gp40; CTI62_28490; phage(gi327198309) | 2.22e-21 | Showinfo_outline |
| 3 | 2265..2444 | Par-like protein; CTI62_28495 | 0.0 | Showinfo_outline |
| 4 | 2797..2985 | hypothetical protein; CTI62_28500 | 0.0 | Showinfo_outline |
| 5 | 2954..3642 | PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; CTI62_28505; phage(gi24373865) | 6.31e-09 | Showinfo_outline |
| 6 | complement(3569..4006) | hypothetical protein; CTI62_28510 | 0.0 | Showinfo_outline |
| 7 | 4300..5823 | PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; CTI62_28515; phage(gi100001) | 2.25e-48 | Showinfo_outline |
| 8 | 5904..6083 | PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CTI62_28520; phage(gi41057343) | 1.04e-33 | Showinfo_outline |
| 9 | 6231..6443 | transposase; CTI62_28525 | 0.0 | Showinfo_outline |
| 10 | 6365..7441 | IS110 family transposase; CTI62_28530 | 0.0 | Showinfo_outline |
| 11 | 7458..7766 | PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CTI62_28535; phage(gi41057343) | 3.86e-67 | Showinfo_outline |
| 12 | complement(7741..8091) | PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; CTI62_28540; phage(gi764159894) | 8.71e-08 | Showinfo_outline |
| 13 | 8154..8858 | PROPHAGE_Brucel_1330: transposase, putative; CTI62_28545; phage(gi23502708) | 1.98e-53 | Showinfo_outline |
| 14 | complement(8804..8920) | adenine-specific DNA-methyltransferase; CTI62_28550 | 0.0 | Showinfo_outline |
| 15 | complement(8920..9300) | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; CTI62_28555; phage(gi100060) | 3.14e-19 | Showinfo_outline |
| 16 | 9395..10000 | PHAGE_Burkho_KS14_NC_015273: gp6; CTI62_28560; phage(gi327198275) | 1.21e-19 | Showinfo_outline |
| 17 | complement(10024..10536) | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; CTI62_28565; phage(gi100060) | 2.56e-109 | Showinfo_outline |
| 18 | 10538..10552 | attL | 0.0 | Showinfo_outline |
| 19 | 10602..11306 | PROPHAGE_Brucel_1330: transposase, putative; CTI62_28570; phage(gi23502708) | 1.98e-53 | Showinfo_outline |
| 20 | 11450..12004 | PHAGE_Staphy_SPbeta_like_NC_029119: bifunctional AAC/APH; CTI62_28575; phage(gi985761240) | 4.30e-16 | Showinfo_outline |
| 21 | 12135..12965 | oxacillin-hydrolyzing class D beta-lactamase OXA-1; CTI62_28580 | 0.0 | Showinfo_outline |
| 22 | 13103..13543 | chloramphenicol acetyltransferase CAT; CTI62_28585 | 0.0 | Showinfo_outline |
| 23 | complement(13597..14301) | PROPHAGE_Brucel_1330: transposase, putative; CTI62_28590; phage(gi23502708) | 1.98e-53 | Showinfo_outline |
| 24 | 14278..14370 | DNA-cytosine methyltransferase; CTI62_28595 | 0.0 | Showinfo_outline |
| 25 | 14408..15268 | PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; CTI62_28600; phage(gi9630129) | 3.38e-25 | Showinfo_outline |
| 26 | 16964..16978 | attR | 0.0 | Showinfo_outline |
| 27 | 18705..18716 | attR | 0.0 | Showinfo_outline |
Sequence
>1023..1034
GGATGAGAACCT
Sequence
>1519..2145
[Klebsiellapneumoniae]
Sequence
>2265..2444
[Klebsiellapneumoniae]
Sequence
>2797..2985
[Klebsiellapneumoniae]
Sequence
>2954..3642
[Klebsiellapneumoniae]
Sequence
>complement(3569..4006)
[Klebsiellapneumoniae]
Sequence
>4300..5823
[Klebsiellapneumoniae]
Sequence
>5904..6083
[Klebsiellapneumoniae]
Sequence
>6231..6443
[Klebsiellapneumoniae]
Sequence
>6365..7441
[Klebsiellapneumoniae]
Sequence
>7458..7766
[Klebsiellapneumoniae]
Sequence
>complement(7741..8091)
[Klebsiellapneumoniae]
Sequence
>8154..8858
[Klebsiellapneumoniae]
Sequence
>complement(8804..8920)
[Klebsiellapneumoniae]
Sequence
>complement(8920..9300)
[Klebsiellapneumoniae]
Sequence
>9395..10000
[Klebsiellapneumoniae]
Sequence
>complement(10024..10536)
[Klebsiellapneumoniae]
Sequence
>10538..10552
TGGCACTGTTGCAAA
Sequence
>10602..11306
[Klebsiellapneumoniae]
Sequence
>11450..12004
[Klebsiellapneumoniae]
Sequence
>12135..12965
[Klebsiellapneumoniae]
Sequence
>13103..13543
[Klebsiellapneumoniae]
Sequence
>complement(13597..14301)
[Klebsiellapneumoniae]
Sequence
>14278..14370
[Klebsiellapneumoniae]
Sequence
>14408..15268
[Klebsiellapneumoniae]
Sequence
>16964..16978
TGGCACTGTTGCAAA
Sequence
>18705..18716
GGATGAGAACCT
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 89345 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: attL (Region 1)
Locus: attLORF Start: 1023
ORF Stop: 1034
Strand: Forward
Protein Sequence: GGATGAGAACCT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 2: CTI62_28490 (Region 1)
Locus: CTI62_28490ORF Start: 1519
ORF Stop: 2145
Strand: Forward
Protein Sequence: MIIVLGSQKGGVGKSTLAVSIAAYLMSLGNRVIIVDADDQKSVLTWYNNRPEDLPHIPVTGATGNIKAMLKEHEKSYDFVIADCAGRDSAEMRSGLMAADVFISPLRPSQMDLDVVPHTCSVFTAAKDFNEDVRGYLVLNMTPTNMFVNEANQAADVLKDYPEMCLASSRVCDRKAHRDAWAESMTIFETQNDKAQQEIESLVKEVIL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: CTI62_28490, gp40, phage(gi327198309), PHAGE_Burkho_KS14_NC_015273
Homolog/Ortholog E-Value: 2.22e-21
Locus 3: CTI62_28495 (Region 1)
Locus: CTI62_28495ORF Start: 2265
ORF Stop: 2444
Strand: Forward
Protein Sequence: MSISFFEENLKDIDDLITGEMISGKSRVNRSDVVRAAVEALKSLSKTEISRLIAEAKQR
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: CTI62_28495, Par-like protein
Homolog/Ortholog E-Value: N/A
Locus 4: CTI62_28500 (Region 1)
Locus: CTI62_28500ORF Start: 2797
ORF Stop: 2985
Strand: Forward
Protein Sequence: MDCFPHKNYFRLKPGVLPIVDLCRLVWGLKWFTEFGHLNRGDMLTSEQHRCHNEKKKFQRRV
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: CTI62_28500, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: CTI62_28505 (Region 1)
Locus: CTI62_28505ORF Start: 2954
ORF Stop: 3642
Strand: Forward
Protein Sequence: MKKRNFSAEFKRESAQLVVDQNYTVADAASAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSGRVILWPLSAMCSGFIAAATNTGKTVLKSQTADGLYYAVRYLNCMASATALPEQEASPQWQPGEVTRWGAGLLADSKSWGWSVASSRLTGISVAVMSTLLSRIILSDSSPRNQIRCGAVMPAT
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: CTI62_28505, ISSod1, transposase OrfA, phage(gi24373865), PROPHAGE_Shewan_MR-1
Homolog/Ortholog E-Value: 6.31e-09
Locus 6: CTI62_28510 (Region 1)
Locus: CTI62_28510ORF Start: 3569
ORF Stop: 4006
Strand: Backward
Protein Sequence: MSKHLRPAVLTYHCQFLLHGLSDHVGRGDVFNPQRRINGFMFFSLSVLNLEDHLGLVISPQSPLSAGYITLRACRRSLPLRFSTVTPGGIVGFLIVSYRFNIPDRLAVHLSIHARPELRAHYRSHHRTTPDLVPLRRTVAQDDSG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: CTI62_28510, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 7: CTI62_28515 (Region 1)
Locus: CTI62_28515ORF Start: 4300
ORF Stop: 5823
Strand: Forward
Protein Sequence: MIISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECRGVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFAASLTALLSGNYSESKVDMAEQLNRKLKGWAMFYQFVDFKAKVFSYIDRVVFWKLAHWLARKYRTGIASLMRWWCKSPKPGQSKTWVLFGKTNHGKLSGEILYRLVGQGKKLFRWRLPEGNPYLRTETRNTYTSRFTEVAMAFASI
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: CTI62_28515, hypothetical protein, phage(gi100001), PHAGE_Pseudo_phi3_NC_030940
Homolog/Ortholog E-Value: 2.25e-48
Locus 8: CTI62_28520 (Region 1)
Locus: CTI62_28520ORF Start: 5904
ORF Stop: 6083
Strand: Forward
Protein Sequence: LTLLWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPVGVMFHSD
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: CTI62_28520, putative transposase OrfB, phage(gi41057343), PHAGE_Shigel_Sf6_NC_005344
Homolog/Ortholog E-Value: 1.04e-33
Locus 9: CTI62_28525 (Region 1)
Locus: CTI62_28525ORF Start: 6231
ORF Stop: 6443
Strand: Forward
Protein Sequence: GSAFMRGISSPMRVTQEGPDGLSRYCPVRVICLEIQLCFLTGALSWLIKLPKLPLWVAWIHIKICTLPLS
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: CTI62_28525, transposase
Homolog/Ortholog E-Value: N/A
Locus 10: CTI62_28530 (Region 1)
Locus: CTI62_28530ORF Start: 6365
ORF Stop: 7441
Strand: Forward
Protein Sequence: MVDKVTEAAVVGGVDTHKDLHVAAVVDQNNKVLGTQYFSTTRQGYRQMLAWMTSFGTLKRIGVECTGTYGSGLLRYFQNAGLEVLEVTAPDRMERRKRGKSDTIDAECAAHAAFSGIRTVTPKTRDGMIESLRVLKTCRKTAISARRVALQIIHSNIISAPDELREQLRNMTRMQLIRTLGSWRPDASEYRNVTNVYRISLKSLARRYLELHDEIADLDVMIAAIVDELAPELIKRNAIGYESASQLLITAGDNPQRLRSESGFAALCGVSPVPVSSGKTNRYRLNRGGDRAANSALHIIAIGRLRTDAKTKEYVARRVAEGHTKMEAIRCLKRYISREVYTLLRNQNRRINSIPITA
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: CTI62_28530, IS110 family transposase
Homolog/Ortholog E-Value: N/A
Locus 11: CTI62_28535 (Region 1)
Locus: CTI62_28535ORF Start: 7458
ORF Stop: 7766
Strand: Forward
Protein Sequence: QGSHYTSRQFRQLLWRYRIRQSMSRRGNCWDNSPMERFFRSLKNEWVPATGYVSFSDAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNAVASFC
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: CTI62_28535, putative transposase OrfB, phage(gi41057343), PHAGE_Shigel_Sf6_NC_005344
Homolog/Ortholog E-Value: 3.86e-67
Locus 12: CTI62_28540 (Region 1)
Locus: CTI62_28540ORF Start: 7741
ORF Stop: 8091
Strand: Backward
Protein Sequence: RMEKARIWEITDRTVRTWLSEAVESAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFAMPEAEAVALIKKLTEVVNKNWPPR
Homolog/Ortholog Species: Integrase
Homolog/Ortholog Protein: CTI62_28540, non-functional integrase, phage(gi764159894), PHAGE_Mycoba_Squirty_NC_026588
Homolog/Ortholog E-Value: 8.71e-08
Locus 13: CTI62_28545 (Region 1)
Locus: CTI62_28545ORF Start: 8154
ORF Stop: 8858
Strand: Forward
Protein Sequence: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: CTI62_28545, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 1.98e-53
Locus 14: CTI62_28550 (Region 1)
Locus: CTI62_28550ORF Start: 8804
ORF Stop: 8920
Strand: Backward
Protein Sequence: DFRRHCCKVSDEAAFCLIQRPYISKTLLTRRISPRGSP
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: CTI62_28550, adenine-specific DNA-methyltransferase
Homolog/Ortholog E-Value: N/A
Locus 15: CTI62_28555 (Region 1)
Locus: CTI62_28555ORF Start: 8920
ORF Stop: 9300
Strand: Backward
Protein Sequence: MSRRHIFTERQRAALFDLPTDELSLLKFYTLGDDDLENIRQRRRPENRIGFALQLCALRYPGRALAPGEMIPREVLSFVGAQLGVPADALLTYATRRQTRQQHMDTLREIYGYKTFTGRGARDLREW
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: CTI62_28555, hypothetical protein, phage(gi100060), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 3.14e-19
Locus 16: CTI62_28560 (Region 1)
Locus: CTI62_28560ORF Start: 9395
ORF Stop: 10000
Strand: Forward
Protein Sequence: MGHRAAIYCRVSTADQSCERQEFDLRAFAGCAGYDVVGIFKETGSGTKLDRAERKKVLALAQSRQIDAILVTELSRWGRSTLDLLNTLRELENWKVSVIAMNGMAFDLSSPYGRMLATFLSGIAEFERDLISERVKSGLAVAKARGKRLGRQAGVRPKSDRLLPKVVAMRAEGRSYRWIARELGISKNTVADIVQRHRANA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: CTI62_28560, gp6, phage(gi327198275), PHAGE_Burkho_KS14_NC_015273
Homolog/Ortholog E-Value: 1.21e-19
Locus 17: CTI62_28565 (Region 1)
Locus: CTI62_28565ORF Start: 10024
ORF Stop: 10536
Strand: Backward
Protein Sequence: FDDYLLPAEKFAALKREQALPLAINPNSDQYLEERLQLLDEQLATVTRLAKDNELPDAILTESGLKITPLDAAVPDRAQALIDQTSQLLPRIKITELLMDVDDWTGFSRHFTHLKDGAEAKDRTLLLSAILGDAINLGLTKMAESSPGLTYAKLSWLQAWHIRDETYSGSV
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: CTI62_28565, hypothetical protein, phage(gi100060), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 2.56e-109
Locus 18: attL (Region 1)
Locus: attLORF Start: 10538
ORF Stop: 10552
Strand: Forward
Protein Sequence: TGGCACTGTTGCAAA
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 19: CTI62_28570 (Region 1)
Locus: CTI62_28570ORF Start: 10602
ORF Stop: 11306
Strand: Forward
Protein Sequence: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: CTI62_28570, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 1.98e-53
Locus 20: CTI62_28575 (Region 1)
Locus: CTI62_28575ORF Start: 11450
ORF Stop: 12004
Strand: Forward
Protein Sequence: MTNSNDSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLADVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGRWEEETDPGVRGIDQLLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTTPYGPAVYMVQTRQAFERTRSDA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: CTI62_28575, bifunctional AAC/APH, phage(gi985761240), PHAGE_Staphy_SPbeta_like_NC_029119
Homolog/Ortholog E-Value: 4.30e-16
Locus 21: CTI62_28580 (Region 1)
Locus: CTI62_28580ORF Start: 12135
ORF Stop: 12965
Strand: Forward
Protein Sequence: MKNTIHINFAIFLIIANIIYSSASASTDISTVASPLFEGTEGCFLLYDASTNAEIAQFNKAKCATQMAPDSTFKIALSLMAFDAEIIDQKTIFKWDKTPKGMEIWNSNHTPKTWMQFSVVWVSQEITQKIGLNKIKNYLKDFDYGNQDFSGDKERNNGLTEAWLESSLKISPEEQIQFLRKIINHNLPVKNSAIENTIENMYLQDLDNSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGHKYVFVSALTGNLGSNLTSSIKAKKNAITILNTLNL
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: CTI62_28580, oxacillin-hydrolyzing class D beta-lactamase OXA-1
Homolog/Ortholog E-Value: N/A
Locus 22: CTI62_28585 (Region 1)
Locus: CTI62_28585ORF Start: 13103
ORF Stop: 13543
Strand: Forward
Protein Sequence: MTNYFDSPFKGKLLSEQVKNPNIKVGRYSYYSGYYHGHSFDDCARYLFPDRDDVDKLIIGSFCSIGSGASFIMAGNQGHRYDWASSFPFFYMQEEPAFSSALDAFQKAGNTVIGNDVWIGSEAMVMPGIKIGHGAVIGSRSLVTKDV
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: CTI62_28585, chloramphenicol acetyltransferase CAT
Homolog/Ortholog E-Value: N/A
Locus 23: CTI62_28590 (Region 1)
Locus: CTI62_28590ORF Start: 13597
ORF Stop: 14301
Strand: Backward
Protein Sequence: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: CTI62_28590, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 1.98e-53
Locus 24: CTI62_28595 (Region 1)
Locus: CTI62_28595ORF Start: 14278
ORF Stop: 14370
Strand: Forward
Protein Sequence: MPAFEWVHVQLHQQKGMISLSPPTICNSASR
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: CTI62_28595, DNA-cytosine methyltransferase
Homolog/Ortholog E-Value: N/A
Locus 25: CTI62_28600 (Region 1)
Locus: CTI62_28600ORF Start: 14408
ORF Stop: 15268
Strand: Forward
Protein Sequence: MHTRKAITEAIRKLGVQTGDLLMVHASLKAIGPVEGGAETVVAALRSAVGPTGTVMGYASWDRSPYEETLNGARLDDKARRTWPPFDPATAGTYRGFGLLNQFLVQAPGARRSAHPDASMVAVGPLAETLTEPHELGHALGEGSPVERFVRLGGKALLLGAPLNSVTALHYAEAVADIPNKRWVTYEMPMLGRNGEVAWKTASEYDSNGILDCFAIEGKPDAVETIANAYVKLGRHREGVVGFAQCYLFDAQDIVTFGVTYLEKHFGATPIVPAHEAAQRSCEPSG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: CTI62_28600, hypothetical protein, phage(gi9630129), PHAGE_Bacill_SPbeta_NC_001884
Homolog/Ortholog E-Value: 3.38e-25
Locus 26: attR (Region 1)
Locus: attRORF Start: 16964
ORF Stop: 16978
Strand: Forward
Protein Sequence: TGGCACTGTTGCAAA
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Locus 27: attR (Region 1)
Locus: attRORF Start: 18705
ORF Stop: 18716
Strand: Forward
Protein Sequence: GGATGAGAACCT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download