Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1336577305 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1336577305.PHASTER.zip
gi|00000000|ref|CP026281.1| Klebsiella oxytoca strain KONIH2 plasmid pKOR-01e8, complete 198115, gc%: 52.35%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.7Kb | incomplete | 20 | 13 | 41323-50058 info_outline | PHAGE_Entero_fiAA91_ss_NC_022750(2) | 53.40% | Show info_outline |
Region DNA
>1 41323-50058 ATGGCTGTTATCAACTCACTCCGCGCTCTCAAAGGCGTAACCGCCCCCGAAGAACTGAAAAAAGGGGATG GATTCACTATCTCTCCTCAGCTTCTGCTGGAGGAAGAAGGGTTTAACACCCGTGGCGCTTTCTGCGAGAA CTACTACGAGCGCCCGGACATCAAAGCTGGTATTCGAGTGCTGGCCGATGCTTACAAGCGTGGCGACTAT GTTCCGCCGATCATCGTCAAAGTTATCGACGGAAAGGTGTATGTCCGTGAAGGTCATCGCCGTCGCCGCG CCATCCTGCTTGCTATCGAGGAAGGTGCCGACATCCAGTTCGTGCAGGTCGTAGAGCACAAGGGCGATGA AGCCGAACAGAGCCTTCTGATCGCCACCAGCAACGATGGGCTCCCTCTTTCTCCACTTGAGCGAGCCGTG ATCTACGCTCGGCTTGCAAACTGGGGGTGGAGCGACCAGATGATTGCCCAACGTGTTGGCCGCTCGGCTG AGCACGTTCGTATCGCCCGTGCCCTTCTGGAGATGCCTCTGGAACTGAAACGGATGATTCAGGAAGGCTC TGTGGCTGCCACCTACGCTCAGGAGCTCTACAACGAGCACGGCACCAACGCTGTTGAGATCCTGAAAAAG GCGCAGGAAGAACAGGCCAATGGCAATGACGGCAAGAAGGCCCCGAAAAAACTGACCAAAAAGTCTGTCG AGAAAGGTCCCCGCCTGGGCAAAAAGGTGGTTGAAGCCATGCACCGAGGCGTGAGCTCTATTACCAGTCG TCTGGACAACATCAAGCCGAACGATGACGGTGAAACGTTCACCCTTACCCTGAGCCGGGAAGATGTTGAT GCGTTTCAGGAGCTGAAAGCCAAGCTGGCGGAGCTGGAGCCCAAAACTGACGAGTCCAATGAAGACCAGC AAGAGCTGGATTTGGCGGGTAATCAGTAATGGGGCGCTGTACTGTTGAGGATGCCATCCAGTTACTGGAA GGGGGAACCATTGTTGCGGTCGTACCGGCGTCATCCGGACCAGATACGCTGGTGGTTTCCTCTATCAGGC TTGAATCCGGACTGACAGTACAGTTTTCCCCTCCAGCGGCAGCCAGTGTCAGTGTTCAGCTCGCGGAGCT CGATGATGAACAGTGACAAGAAATCGTCTGAACTAGCCAGGCTGAGGCGTCAGCATCAGCTAGTTTGCTC TGTCATCGCAGCCTTGCTCATCTGTGCAGGTATATATGGGACCGTTGCACGTTTGGGCTTCATCCTGATG GTGCCATTGTTTGTTATCGCCTTAGGTGTGTTAGTCGATGCGTTCCTGCCAAGGGTAAGTTGGTTCTTCT GTGTGCGGGACGTGAGAGACATATTTGGGTGGAGAAAACGATAGTGGCGAAGTTGAAGGTTTATGGCGGG ATCACTTATGGGGTCGAGGGGCAGTTCAGAACTGTCGTTGCGGCCACAAGTAAGAGCAAGGCTGCTTCAA TTCTGAATATCACGATTTACCAGATGAATAGCTGGTGGACGGAGACTTTTAACAAGTACGAGGTCGAGGC GGCGATGTCTGAGCCGGGGGCTATTTTTTCAAAGCCTCTCGATGGCAGAGGCCCATTTGTAAAGCAGGAA GGATAATTGTGAGAAGTGTTTTTGTATGGTTGAAGGCCGGGGCAATACTGGCTTTCCTATTCATCGGTAT TGCTGGTGCTGTCAACCGGGTCTATTGGGTTAACAGCCAAGGTTTGAGTCAGGGGTCGATGTCATCCACA TGGGTTAAAGAAAAGTTTGGCCTAGACCTTGGTGCAATGTGCCGTTATGACAAACCCCAGCATGTCGAGT TCAAAGTCCTTCCTGATCAGACAATCCAGTTCCGCTGCTCATGGTTTGAAGGTGGCGGATTAACCTGGTG GCCTTTCTACACCGAGCATGATGTAAAGAGCGCCGAGGCGACCTCTGTGCTCAATGACATCTTCCAGGGT ACGGAGGGGCATGATGAGTAGCCAGCTAGAACTTTTTCATGTCCAAGAGGCGTATGCCAAGGCCGATAAG CCGCTATCGAATGAGGAGCTCTACGATTCAGTGGCAGAGCTCGCTGGAATCCCGAAAAGCGCTCTGAATG AACAAAGTGAAATTGGCAAGGCAAAGATCAAGCGGAGCAAGCTGAAAAGACAGATACGCTGGTATTGCGT ATTCCGGCGAAGTTGAACAGCCATTCCGGCCAACGTGAACACCCTGATCCTTAACGCGCTCACGTCATCT CGTTTCTAACTCGACTGTTCAGATTGGGTCAACTCACTTCTCCTCTTCCTCATCGATTCTCCCTTCAGTG ACAGCCGGTGAGCGTTGTGCATCAGCCGGTCCAGGATCGCATCTGCCAGGGTGTTGTCACCCAAGCTCGC GTACCACTCTTCAGTTGGCAGCTGACTGACCACTATCGTCGAGTATTTCCCATACCGATCATCCATGATC TCCAGCAGTGCGTTGCGCTGTTCGGCACTCACCGCTTCCAGTCCCCAGTCATCCAGGATCAGCAGCTCTA TCCTTGCCAGTTGACCCAACAGTCTGGCGTAACTGCCATCTACCTTGGCCTGGCTCAGCTCAAGCAGCAG ACGTGGCAGCCGGTAGTAACGAGTGCTATGCCCTTGCTGACAGGCTTGGTAGCCCAGCGCACAAGCCAGG TAGGTTTTTCCACAGCCACAGGGGCCGGTAATGAGCAGGTTCTGGCCCCGGCGCAGCCACTCTCCTTGGG CCAGGTTTGCTACCTGTGACCGCTCCAGGTTGCGTGCTGACTGGTAGTCCAGCTCCTGCACCGTGGCCTG GAGTTTGAGCCTTGCCTGCTTGACCAGCCGAGTTTGCTTACGCTGCTCCCGGCTCAGTTGTTCGTGTTCG ACCAGCAGGCTTAGCCGCTCGATGAAGGGCAGCCCTTCGTAGGTACTCGCATGTTCCAGTTGTTGTTGCA CGGCATCCGCCATGCCGGTCAGTTTCAGGTTTCTCAGGCGGGTCAGGGTTTGTTGGGTCATGGGGCGTAT CCTCTTTAGTGGAAGCTCTGGGGGCCACGGATGTTCTCGTGCTCTTGCGGTAACTCTGGGTAGCTCAGCG GGCTTGCGGGCAGTTGGTCGCGGCCACTGGTCAGCACCGACTTGAGCTGTTTGAGTCGCACCAGACCTTC CCGGTTGGCCAACTGGCAACAGGCTTCAACCCGTGATGGCGGATACTCCCGGCTAAGACTCAGCAGCCCC AGGCAGAGTCGGTATGCCTGCTCGGCATGGGCTTTCTCTTCCAACCGTTCGCTAACCCAGCACAAGGTGC TCGGTCCGATGTCAGCAGCCCACTGTTTAAGACGCCCTGGGGTCCAGCGTTGCTGCTTGCTGTGACGTTC CGGCATGTGCTCAGGGAGCGTGCTCATCCCCGGGATGGTTTTACGTGGATGGCTCGCGACCAGCTGTTGC TGGTGATAGACCTGAAGCAGTGTGTCGCCTGCATGGAGCTCCAGTTGCTGACCCACATACTGGTGTGGCA CCGAGTAATGGTGCTGCTCATAGCTGACGTGATAGTCGATGTTGACCTTGACCGTTTTGATGGCGACATA GCGATAGGGATGCACCGGCAGTGGTCCCAGTGCCGGGCGGTCCAACTGCTCAAATGCGTCACGTCGGTTA CCGGGCAGTTGCTTGAACGGACGCTCGTTGAGTTCGTTCAGCAAGGCACGGATGCACTGGTTGAGTTCGG CAAGCGAGAAGAAGGTCTGATGGCGTAGACGGGCCAGGATCCAGCGCTCGACGATCTGCACACCCACCTC CGCCTTGGCCTTGTCCTTGGGCTTGTAAGGACGAGCTGGCATCACCGCCACCTGATAGTGCTCGGCCAAC TGCTGGTAGCTGGGGTTGAGCTCGGGATCGTATCGGCAAGCCTTGCTGACACCGCTCTTGAGGTTGTCGG GGATCAGCAGTGCCGGTGTCCCGCCGAAAAACTCAAAGGCACGGACATGGCTTTGCAGCCAGTCCGGCAG TGACTGTGACCAGGTGGCCTCGGCAAAGGTGTAGTTGGACGCACCGAGCACGGCGACAAAGACTTGTGCC TGACGGACCTCACCCGTAGTCGGCGACACGATGGGCACCGTGGGCCCGCAGTAGTCGATAAAGAGCTTTT CCCCCGCCTTGTGGATCTGGCGCATGGAGCGCTTTTGCAACTGACACCAGGACTTGTAACGGTCACAGAA CTGGGAGTAGCTGTAACAGCTATTGGGATAGCGCTGGGTGTACTCCTCCCAGAGCAGCTGTTTGGAGACC CCCTTGCGCTTGAGCTCCTGATGGACAGAGGGCCAATCCGGCACAACATGGCGGGCCGAGATGGTGGTAT CGGCCTGCGGATAGAACAGGGCAGCCAGTCGGCCATCATCAAGCTCGGTAGGTAAGGGCCAGGTAAGGCC CAGCGCCTGGGCACTTTTGAGGAGTTTCTGGATGGAGCCGACACTGACCTTGGTACAGATACTGATTTGG CGAACAGAGAGGTCAGCTTCCAGCCGCAGTCGCAGCACTTCACGAATTTTACGCATTGCAATCCTCTTGG CAGACATAGGCTCTTCCCTGGCAAAAGGGAGAGCGTATCAAAGGTTTTTAAATCAATGCGTTAAGGATGA TTCTGGTGAATGTGAACAGTGATTCCGGGATGTTGAACACTGTTTCCGGAAAGGAGGGGCAAAGTGTTCA GGTTGAGCCGGAATGAGCGTTCACATTGGTCCGGAAATGGTGTTCACGTTGAACCGGAATCGGTGTTCAT GATCGGCCGGAATATGCAGGTATCAGCAAACCCTCAAGTCGATGAACCTTCTCCAGAAGGTGGACGGCGA GCGGGGTGTCTGGGAGCTCTCAAGCAAAACCAAGAAGGGCCTGCATGAAGCGCTTGGTGGCATTCGACTT GTCGCCTATTCAACAAATCTTGGGCTGGCGGTGTGGTCAAACAACAAGAGCTTTTTCTCTGACCTCGATG AGCCGGTGCATCTGTGTGTGACATCTCCGCCGTTTCCGCTCCGAATACAGCGTGGCTATGGAAACGTTGA TGAAGCCAAATGGGTGGATTTCATAACCCAGGCGCTCGAACCGATAGTCAAGAACCTGGTGCCAGGAGGA AGCGTTGTCCTGAATGTCAGCAATGACATCTTCGAGGCCAAGAGCCCCTCCAGATCTCTCTATGTTGAAA GAATGGTGCTGGCGCTCCATGATCGGCTCGGGCTGTCTCTCATGGATAGATGGCCGTGGATCAACCTGTC AAAACCACCAAGTCCAACCCACTGGGCTTGTGTGAACCGTTACCAGTTGTGTGCCGGGTGGGAGCCTGTT TATTGGTTCACCAACGACCCTGACAGGGTGCGTTCTGACAACAGAAGGGTCCTGATCCCTCATACAGAGA AACATCAGAAGCTGATGGCTCAAGGGGGGGATAACCGAGTGGTCAGTTATGGTGACGGGGCATATCGACT GAGAGGGAACGCATTCTCTAATGTCACAGAAGGACGGATACCGAAAAACGTTATCCAGCGCGGCCACCGT TGTGCGGATACGCTGGAGCTTCGGAGAATCGCTAGAGAACTGGGGTTGCCACCGCACCCGGCAATGTTCC CAACAGACATACCTGAGATGGCTATCCGCTTTCTGACGGAAGAGGGCGACCTTGTTGTTGATCCGTTCAG TGGGTCGAATAAGAGCGGGTTGGCCGCAGAAAGGAATAACCGGCGCTGGATCGCCTGTGACATCATTCTT GAGTACATTCGTACCCAGGCGGAAATGTTCACCGGCTTTGATGGATTTTGGATTAACCCAGCCATAGCAA CAGTGGGCGGGGGAGCGTTGAATTAAGAGAACAATACCTATGAGTTTAAGTTTTATTGCAAGAGTCTTGC GCCAATTGGCAATTATGTTTGTCCTCTCCGTGCTTATTGTGGCCGGATATATCTACTATGCCGGTAAACA GCATCAGCAGGCAGCAATCAACTTTTGGGGTGAGCAATACCAGCCTGATGCCATCTCGACGCAAATTGAT TGGGGGTTTATCGGTAACTGGGTTATTCCTCGCGGGGGGCCAATTATTTCTCCGGGCATTGCTGGAGTGT GTCCCAATACACCACTTCCCGTTGTGCCTCTTAAAATTGGTCCTGATGGCCGGGGTTACGTTCTCTGTGG TATTGGAAGTGAGGCTGTCTCTACCAGCTTTGATGTCAATGACATCCAGGATGAAGAAATACGAAACACA TTAAAAACGATGTTTGAGGAAGAATTTGAAAAAACAGTTAAGGGGGATAAATGGACGCTAAAGAACTGAA CCACATGATAGCTGAGGCCTACAGCCGGGATTTGCAAAAGCCTGAGCTGGTATCGTTCAAAGAGGTGAGT CGCTGGGGGCGTAAGTACGGTTTCCCCGTCGTATGCACTCTGGCCGATGAAAGTGAAGAAAAGCAGATCC ACTGGGCTGCCAGTTTGCTCATTCAAGTAGCCGGTACTTGGCCGCGAGAAGATATGCCGGAATTGCTCAC ACCGGAACGGGGCTCCGCGCTGTTCAACGATGCGATGCAGTTATTGGCGAATGGGCTTGGAGCAGCAAAT CAATTGCGCTGACAGCACAAACCTTGTCAATAAGCGGCCTTCATGGCCGTTTTTTTGTTTAAAGTTTGTT TTAACAGAACCATAATTAGATATTGCAGTATCATTTTATGATCGCTACAATCTTTCACATGTGAAAGTTT GGGGGTGGTCTTGATCACCTGCGAGAAACCAAAATAGAGGTGGGTATGGCAAAAGTAATCAGCTTCGCCA ACCAGAAAGGCGGAGTGGGTAAGAGTACCCTCTGTATCCAGCAGGCCTTTTATCTGGCGTTACAGAAGAA AAAGAAAGTGCTGGTCTTGGATATGGATGGTCAGGGGAACACGTCCTCTCGACTGGCCCCCAGACGAGAG CTTGAGGATGGTGACTACGAGCCCATCCTCACAGGAACCAAAACCGCAGAGCTGTTCGCTTACGAGCTGG ACGGCATTGAGGTCATGCACTGCCCTTGCGGTGCAGACCTCATTCATACGCCGAAAAACGACCCGGATCT GTTTGAGATGGAGGCTGTGCCTCTTGACCAGGCCATGAATCCGGCTCGCCATTTGGCTGAGCTGTTTGAG AACTACGACTACGTGCTGATTGATTGTCCGCCTAGCCTCGGCAGAAAGCTGGTGGCAGCGTTGGTGATGT CTACCCATGTGGCATGTCCAGTAAAGCTCTCTGGCTTCGCTGTGGACGGCGTAGAAGGTCTCCTGAACAC GATTATTGGTGTGCGCGAGGCGTACAACCAAGATTTGGAGATCCTGGGCATCGTGATCAACGACATGGAC CGCTCTGTCAATCACGACAAAGCCCTCAAGTCGCTGGAGAACACAGTTCCGGATCTGTTGTTTGAGAACA AAATTATGCACCGGCCTCCGCTCGATACGGCGACGACTGATGGCATCCCTGTCTGGGAGCTTCGCTATGG ACATGTCGCGGCCAAAGAAGTTGAGGCGGTGTTGGAAGAACTATTAGAGAAGGTGGGCTAAGCGATGGCA TTGAACAATTTAAAAGGCCTGTCCGAACTTGCTAAAGCCGCCAAAGGCAAGAAAGGCAAAGAGGTTCTTA CCGTACCTGTTGACGACGTTGTATCCAAGGTCCAGGTTCGTAAGCGCTTCCGTAACATTGAAGAGCTGGC GGCAACCTTGCTGACCGAAGGGCAGCAGTCTCCGATCATCGTGTTCCCGAAGAACGAAGAAGGCAAGTTC GTCATCCAAAAAGGGGAGCGGCGTTGGAGAGCGTGTAAACACGCTGGTATCGAGACCATTGACTTGGTGG TGAATGATAAGGTCCAGAACAACTTGGACGAGACTGCTGGTGAGCTGATCGAAAACATCCAGCGGGATGA CTTGACTCCGGTAGAGATTGCCGAGGCGTTAAACCTGTTTATTGAAGAAGGTTGGAAGCAAAAGGATATT GCTGATCGGCTCGGTAAGAATATCACTTTCGTATCTACGCATCTGTCGTTGCTCAAGCTACCTGACTGTG TGCGTGAGTTATACGATAATGAAGTATGTTCTGATACAGAGACCTTGAATAACCTTCGTCTCTTGTTCGA TCTGAATGAAGAAAGATGTCGCGCCGTCTGCGCGGTGGCTATGTCTGACGGGATTACTCGTAAACAAAGC CGTGAGCTGCTGAATGATGCCAAACGTATCAAAGACGAAATGGAAAAAGGCCCACTGACTGGCTCCCACC AGAATGATGAGCTTGGCGCTGGCAACACCGACGAGCAATCCCTCAACTCGGGTGGGGATGGTACGTCGGA ACAAACCGGGAATGACGACCTGAACCTTGCCCAGGAGGAACTGGAAGGGGGTAAAAATTCCAATGGTCAG GACGATGATGACGAAGACCCTTTGCGTGATGAAGAGGGTGAGCACAAAGATCCTGTCAAGCAGCCAGATA ACAGCGGCAAGGACAAAGATGAAGAAGGCGGTGATGCTCTTCCTCCTCTGCCGAAGGACAAGGAATGGAA GAACGTCCGGGCTGACAGTTTGATTTTTGCTGTCAACGTTAACCTGGATGGCGAGACCAAACGTGGAGTC ATCATGACCGACCGTGTTGCTCTGGTTCCGTCTACTGTCTGGGTTAAAACGCTCGATGGCGAAGGCAAGG AAAAGCATGTTCATGTGCCTGTGTCAGACATTGAACTCCTGAGTGTCGAAGGCTAA
Region Details
| Region | 1 |
| Region Length | 8.7Kb |
| Completeness(score) | incomplete(20) |
| Specific Keyword | transposase |
| Region Position | 41323-50058 |
| # tRNA | 0 |
| # Total Proteins | 13 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 7 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Entero_fiAA91_ss_NC_022750(2) PHAGE_Gordon_Schwabeltier_NC_031255(1) PHAGE_Escher_vB_EcoM_ep3_NC_025430(1) PHAGE_Cronob_vB_CsaM_GAP32_NC_019401(1) PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995(1) PHAGE_Gordon_Bowser_NC_030930(1) PHAGE_Staphy_80_NC_030652(1) PHAGE_Cellul_phi18:3_NC_021794(1) PHAGE_Salmon_9NA_NC_025443(1) PHAGE_Gordon_Nyceirae_NC_031004(1) PHAGE_Salmon_SE2_NC_016763(1) PHAGE_Natria_PhiCh1_NC_004084(1) PHAGE_Pseudo_MD8_NC_031091(1) PHAGE_Clostr_phiCD6356_NC_015262(1) PHAGE_Entero_EF62phi_NC_017732(1) PHAGE_Burkho_DC1_NC_018452(1) PHAGE_Brevib_Sundance_NC_028749(1) PHAGE_Prochl_P_TIM68_NC_028955(1) PHAGE_Lactob_LF1_NC_019486(1) PHAGE_Entero_EcP1_NC_019485(1) PHAGE_Staphy_phiSa119_NC_025460(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 15.38% |
| GC % | 53.40% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|CP026281.1| Klebsiella oxytoca strain KONIH2 plasmid pKOR-01e8, complete 198115, gc%: 52.35%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 13 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 41323..42261 | PHAGE_Salmon_9NA_NC_025443: hypothetical protein; C2U42_02010; phage(gi712914037) | 1.67e-48 | Showinfo_outline |
| 2 | 42261..42458 | hypothetical protein; C2U42_02015 | 0.0 | Showinfo_outline |
| 3 | 42445..42696 | hypothetical protein; C2U42_02020 | 0.0 | Showinfo_outline |
| 4 | 42696..42938 | hypothetical protein; C2U42_02025 | 0.0 | Showinfo_outline |
| 5 | 42941..43303 | hypothetical protein; C2U42_02030 | 0.0 | Showinfo_outline |
| 6 | 43296..43508 | hypothetical protein; C2U42_02035 | 0.0 | Showinfo_outline |
| 7 | complement(43568..44323) | PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; C2U42_02040; phage(gi557307613) | 2.96e-36 | Showinfo_outline |
| 8 | complement(44338..45879) | PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; C2U42_02045; phage(gi557307612) | 1.40e-13 | Showinfo_outline |
| 9 | 46124..47158 | PHAGE_Cellul_phi18:3_NC_021794: DNA methylase; C2U42_02050; phage(gi526177372) | 2.08e-15 | Showinfo_outline |
| 10 | 47172..47621 | hypothetical protein; C2U42_02055 | 0.0 | Showinfo_outline |
| 11 | 47603..47914 | hypothetical protein; C2U42_02060 | 0.0 | Showinfo_outline |
| 12 | 48088..48873 | PHAGE_Brevib_Sundance_NC_028749: putative cobyrinic acid ac-diamide synthase; C2U42_02065; phage(gi971482557) | 3.18e-16 | Showinfo_outline |
| 13 | 48877..50058 | PHAGE_Gordon_Nyceirae_NC_031004: hypothetical protein; C2U42_02070; phage(gi100046) | 3.59e-14 | Showinfo_outline |
Sequence
>41323..42261
[Klebsiellaoxytoca]
Sequence
>42261..42458
[Klebsiellaoxytoca]
Sequence
>42445..42696
[Klebsiellaoxytoca]
Sequence
>42696..42938
[Klebsiellaoxytoca]
Sequence
>42941..43303
[Klebsiellaoxytoca]
Sequence
>43296..43508
[Klebsiellaoxytoca]
Sequence
>complement(43568..44323)
[Klebsiellaoxytoca]
Sequence
>complement(44338..45879)
[Klebsiellaoxytoca]
Sequence
>46124..47158
[Klebsiellaoxytoca]
Sequence
>47172..47621
[Klebsiellaoxytoca]
Sequence
>47603..47914
[Klebsiellaoxytoca]
Sequence
>48088..48873
[Klebsiellaoxytoca]
Sequence
>48877..50058
[Klebsiellaoxytoca]
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 198115 bps
Phages: 1
arrow_upwardarrow_upwardarrow_upward
Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: C2U42_02010 (Region 1)
Locus: C2U42_02010ORF Start: 41323
ORF Stop: 42261
Strand: Forward
Protein Sequence: MAVINSLRALKGVTAPEELKKGDGFTISPQLLLEEEGFNTRGAFCENYYERPDIKAGIRVLADAYKRGDYVPPIIVKVIDGKVYVREGHRRRRAILLAIEEGADIQFVQVVEHKGDEAEQSLLIATSNDGLPLSPLERAVIYARLANWGWSDQMIAQRVGRSAEHVRIARALLEMPLELKRMIQEGSVAATYAQELYNEHGTNAVEILKKAQEEQANGNDGKKAPKKLTKKSVEKGPRLGKKVVEAMHRGVSSITSRLDNIKPNDDGETFTLTLSREDVDAFQELKAKLAELEPKTDESNEDQQELDLAGNQ
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: C2U42_02010, hypothetical protein, phage(gi712914037), PHAGE_Salmon_9NA_NC_025443
Homolog/Ortholog E-Value: 1.67e-48
Locus 2: C2U42_02015 (Region 1)
Locus: C2U42_02015ORF Start: 42261
ORF Stop: 42458
Strand: Forward
Protein Sequence: MGRCTVEDAIQLLEGGTIVAVVPASSGPDTLVVSSIRLESGLTVQFSPPAAASVSVQLAELDDEQ
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: C2U42_02015, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 3: C2U42_02020 (Region 1)
Locus: C2U42_02020ORF Start: 42445
ORF Stop: 42696
Strand: Forward
Protein Sequence: MMNSDKKSSELARLRRQHQLVCSVIAALLICAGIYGTVARLGFILMVPLFVIALGVLVDAFLPRVSWFFCVRDVRDIFGWRKR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: C2U42_02020, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 4: C2U42_02025 (Region 1)
Locus: C2U42_02025ORF Start: 42696
ORF Stop: 42938
Strand: Forward
Protein Sequence: MAKLKVYGGITYGVEGQFRTVVAATSKSKAASILNITIYQMNSWWTETFNKYEVEAAMSEPGAIFSKPLDGRGPFVKQEG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: C2U42_02025, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 5: C2U42_02030 (Region 1)
Locus: C2U42_02030ORF Start: 42941
ORF Stop: 43303
Strand: Forward
Protein Sequence: MRSVFVWLKAGAILAFLFIGIAGAVNRVYWVNSQGLSQGSMSSTWVKEKFGLDLGAMCRYDKPQHVEFKVLPDQTIQFRCSWFEGGGLTWWPFYTEHDVKSAEATSVLNDIFQGTEGHDE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: C2U42_02030, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 6: C2U42_02035 (Region 1)
Locus: C2U42_02035ORF Start: 43296
ORF Stop: 43508
Strand: Forward
Protein Sequence: MSSQLELFHVQEAYAKADKPLSNEELYDSVAELAGIPKSALNEQSEIGKAKIKRSKLKRQIRWYCVFRRS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: C2U42_02035, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 7: C2U42_02040 (Region 1)
Locus: C2U42_02040ORF Start: 43568
ORF Stop: 44323
Strand: Backward
Protein Sequence: MTQQTLTRLRNLKLTGMADAVQQQLEHASTYEGLPFIERLSLLVEHEQLSREQRKQTRLVKQARLKLQATVQELDYQSARNLERSQVANLAQGEWLRRGQNLLITGPCGCGKTYLACALGYQACQQGHSTRYYRLPRLLLELSQAKVDGSYARLLGQLARIELLILDDWGLEAVSAEQRNALLEIMDDRYGKYSTIVVSQLPTEEWYASLGDNTLADAILDRLMHNAHRLSLKGESMRKRRSELTQSEQSS
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: C2U42_02040, IS21 transposition protein, phage(gi557307613), PHAGE_Entero_fiAA91_ss_NC_022750
Homolog/Ortholog E-Value: 2.96e-36
Locus 8: C2U42_02045 (Region 1)
Locus: C2U42_02045ORF Start: 44338
ORF Stop: 45879
Strand: Backward
Protein Sequence: MSAKRIAMRKIREVLRLRLEADLSVRQISICTKVSVGSIQKLLKSAQALGLTWPLPTELDDGRLAALFYPQADTTISARHVVPDWPSVHQELKRKGVSKQLLWEEYTQRYPNSCYSYSQFCDRYKSWCQLQKRSMRQIHKAGEKLFIDYCGPTVPIVSPTTGEVRQAQVFVAVLGASNYTFAEATWSQSLPDWLQSHVRAFEFFGGTPALLIPDNLKSGVSKACRYDPELNPSYQQLAEHYQVAVMPARPYKPKDKAKAEVGVQIVERWILARLRHQTFFSLAELNQCIRALLNELNERPFKQLPGNRRDAFEQLDRPALGPLPVHPYRYVAIKTVKVNIDYHVSYEQHHYSVPHQYVGQQLELHAGDTLLQVYHQQQLVASHPRKTIPGMSTLPEHMPERHSKQQRWTPGRLKQWAADIGPSTLCWVSERLEEKAHAEQAYRLCLGLLSLSREYPPSRVEACCQLANREGLVRLKQLKSVLTSGRDQLPASPLSYPELPQEHENIRGPQSFH
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: C2U42_02045, IS21 transposase, phage(gi557307612), PHAGE_Entero_fiAA91_ss_NC_022750
Homolog/Ortholog E-Value: 1.40e-13
Locus 9: C2U42_02050 (Region 1)
Locus: C2U42_02050ORF Start: 46124
ORF Stop: 47158
Strand: Forward
Protein Sequence: MNLLQKVDGERGVWELSSKTKKGLHEALGGIRLVAYSTNLGLAVWSNNKSFFSDLDEPVHLCVTSPPFPLRIQRGYGNVDEAKWVDFITQALEPIVKNLVPGGSVVLNVSNDIFEAKSPSRSLYVERMVLALHDRLGLSLMDRWPWINLSKPPSPTHWACVNRYQLCAGWEPVYWFTNDPDRVRSDNRRVLIPHTEKHQKLMAQGGDNRVVSYGDGAYRLRGNAFSNVTEGRIPKNVIQRGHRCADTLELRRIARELGLPPHPAMFPTDIPEMAIRFLTEEGDLVVDPFSGSNKSGLAAERNNRRWIACDIILEYIRTQAEMFTGFDGFWINPAIATVGGGALN
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: C2U42_02050, 3_NC_021794: DNA methylase, phage(gi526177372), PHAGE_Cellul_phi18
Homolog/Ortholog E-Value: 2.08e-15
Locus 10: C2U42_02055 (Region 1)
Locus: C2U42_02055ORF Start: 47172
ORF Stop: 47621
Strand: Forward
Protein Sequence: MSLSFIARVLRQLAIMFVLSVLIVAGYIYYAGKQHQQAAINFWGEQYQPDAISTQIDWGFIGNWVIPRGGPIISPGIAGVCPNTPLPVVPLKIGPDGRGYVLCGIGSEAVSTSFDVNDIQDEEIRNTLKTMFEEEFEKTVKGDKWTLKN
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: C2U42_02055, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 11: C2U42_02060 (Region 1)
Locus: C2U42_02060ORF Start: 47603
ORF Stop: 47914
Strand: Forward
Protein Sequence: MDAKELNHMIAEAYSRDLQKPELVSFKEVSRWGRKYGFPVVCTLADESEEKQIHWAASLLIQVAGTWPREDMPELLTPERGSALFNDAMQLLANGLGAANQLR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: C2U42_02060, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 12: C2U42_02065 (Region 1)
Locus: C2U42_02065ORF Start: 48088
ORF Stop: 48873
Strand: Forward
Protein Sequence: MAKVISFANQKGGVGKSTLCIQQAFYLALQKKKKVLVLDMDGQGNTSSRLAPRRELEDGDYEPILTGTKTAELFAYELDGIEVMHCPCGADLIHTPKNDPDLFEMEAVPLDQAMNPARHLAELFENYDYVLIDCPPSLGRKLVAALVMSTHVACPVKLSGFAVDGVEGLLNTIIGVREAYNQDLEILGIVINDMDRSVNHDKALKSLENTVPDLLFENKIMHRPPLDTATTDGIPVWELRYGHVAAKEVEAVLEELLEKVG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: C2U42_02065, putative cobyrinic acid ac-diamide synthase, phage(gi971482557), PHAGE_Brevib_Sundance_NC_028749
Homolog/Ortholog E-Value: 3.18e-16
Locus 13: C2U42_02070 (Region 1)
Locus: C2U42_02070ORF Start: 48877
ORF Stop: 50058
Strand: Forward
Protein Sequence: MALNNLKGLSELAKAAKGKKGKEVLTVPVDDVVSKVQVRKRFRNIEELAATLLTEGQQSPIIVFPKNEEGKFVIQKGERRWRACKHAGIETIDLVVNDKVQNNLDETAGELIENIQRDDLTPVEIAEALNLFIEEGWKQKDIADRLGKNITFVSTHLSLLKLPDCVRELYDNEVCSDTETLNNLRLLFDLNEERCRAVCAVAMSDGITRKQSRELLNDAKRIKDEMEKGPLTGSHQNDELGAGNTDEQSLNSGGDGTSEQTGNDDLNLAQEELEGGKNSNGQDDDDEDPLRDEEGEHKDPVKQPDNSGKDKDEEGGDALPPLPKDKEWKNVRADSLIFAVNVNLDGETKRGVIMTDRVALVPSTVWVKTLDGEGKEKHVHVPVSDIELLSVEG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: C2U42_02070, hypothetical protein, phage(gi100046), PHAGE_Gordon_Nyceirae_NC_031004
Homolog/Ortholog E-Value: 3.59e-14
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download