Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1539303977 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1539303977.PHASTER.zip
gi|00000000|ref|LR134125.1| Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5. 770373, gc%: 55.22%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 9.6Kb | incomplete | 10 | 8 | 235461-245073 info_outline | PHAGE_Bacill_G_NC_023719(3) | 57.00% | Show info_outline |
Region DNA
>1 235461-245073 TTATGTAACGCGGATATAAGATCGTAAAAAACGGTCGCCTTTATTATCAAAACGCGCGCTACGCTCGCCG GCAATTTCGGTAAGCAGTTCCGCTCTCAGCACTCGCTTGCCCGAATCGTCGTTTTCAGCCATATCGGCCA TCATTTCCAGCGTGTTCAACGCCCGGCGCGCATCGCCGTTGACCAGCTCGGCAATCGCCTTGCGGGTTTC ATCCGGCAGGATAATATCTTGCCCACCGTAGCCTCGCGCTTTATCGCTCATCGCCTGGTTGAGCACCTGC TCGATATCGTCCGTGGTCAATGATTTGAGCAAGTAGACGCGAGCGCGGGAGAGCAAAGCGGAATTAAGTT CAAATGACGGGTTTTCGGTCGTCGCGCCAATAAAAGTAATAGTGCCGTCTTCGATGTGCGGTAGAAAGGC ATCCTGCTGACTTTTATTAAAACGATGCACTTCATCAACAAACAGGATAGTGCGTCGACCAGCGTTGCGA TTTTGCCGCGCACGTTCTATAGCTTCGCGGATCTCTTTGACGCCAGATGTAACAGCCGAGATACGCTCGA CATCAGCATTGGCGTAGCGAGCGATCACTTCCGCAAGGGTAGTTTTACCCGTGCCCGGCGGCCCCCACAG GATCATCGAGTGCAGATGCCCTGCCTCAATCGCCCGCGGCAGCGGTTTACCCGGCGCCAGCAGGTGCTGC TGGCCAATGTACTGCGCTAAATTTTCTGGCCGCATACGGGCGGCCAGAGGTTGAAATGCATTATCGGAAA AATCGAGCGAAAAGTTGCTCACATTCGCCTCTACTTACGTTGATCGTCCACCGTCACCCCTTGCGGCGGC GTAAAAGTGAACTTAGATGCATCGACGGCGCCATTCTGCTGCGACTTCAGCTGATAGCTGCTGCGCTGGT CGTCTTGCTCAACGGCGCTGAACTGATGGATAGTACCGTCACGGCCCACATTGATTGTGAACTGCTTGAG GTTGCCGTTACCGCTTTTCGGCGTCAGCACAAAATCATCGCCGTTTTGTTTGATGTTGTATTGCTGCCAG TCCGCTGACTGGTTGCGGGCGATCAGCATGAACGGCGTGTTACTGGTCGCGTTTTTCAGCCAGGTCGCGG TTGCCTGCTCCACAAACGGATTATAGAACCACAGCGTTTTCCCATCCGATACCAGAATACTTTCATCCGG CTGGGTCATATGCCAGTTGAACAGATTCGGGCGTTTCACCCACAAATCGCCCTGCCCGTCCTGCACGGCA TTACCGCTTGCGTCGGTCACTTTCTGAGTGAAGCTGGCATGGAAGCTGCTGACTTTATCCAGACGGCTTT TTAAGTCGCCGGCAGCGTCTGCCCAAACCTGGCTTACCACGAAGCCAGACAATAATGCACAGGTGATGGC AAGTTTCTTCATTGTTGATCCTTATTGTGCGTCACTCCCGACGCGGGAGCCTGTTCTGTCCCTACTGTAG AGCCGTTGAGAGCAACGGAATAGCAGAACAGGCTGATTTTGCGCTTATTTACCGAACTTTGCACTTACTC GAAGGGCGGCGGTGCCAGGACTTCACGGTTACCGTTATGGCCTTGCTCGCTGACGATCCCCTGAGCTTCC ATCTGCTCAATGATACGCGCCGCGCGGTTATAACCGATACGGAACTGACGCTGCACCCCCGAGATCGAGG CTTTGCGCTTCTCGGTTACGAAGTTGACCGCCTGATCGAACAGCGGATCCAGCTCTTCCCCGCCATCAAA GCCGCCACCACCGCCTTCGCTTTCGCTATCAGAGGTAATACCGTCAACATACTGCGGACGACCGCGCGCT TTCCAGTCCTGCACCACGGCGTGTACTTCCTGGTCACGGACAAACGCGCCATGGACGCGAACCGGCATCG TGGAGTTCGGCCCGGAATAGAGCATATCCCCCATGCCCAGCAGCGATTCTGCGCCCCCCTGGTCAAGGAT GGTACGCGAGTCAATCTTGCTCGATACGGTGAAGGCGATACGCGTCGGAATGTTGGCCTTGATAAGACCG GTAATCACGTCAACCGACGGACGCTGGGTCGCCAGCACCAGGTGAATGCCCGCCGCGCGCGCTTTCTGCG CCAGACGCGCAATCAGTTCTTCCACCTTCTTACCGACGGTCATCATCAGATCGGCGAATTCATCCACCAG CACCACGATGTACGGCAGTTTTTCCAGCACCGGATGCACGGCGTCCATACTGTCGCCCGGTTTCCAGTAA GGATCCGGGATCGGGCGTCCCATGCGTGCGGCCTCAGCGATCTTCTCGTTGTAGCCCGCCAGATTACGCA CGCCCAGCGCCGACATCAGCTTATAACGGCGCTCCATTTCATTGACGCTCCAGCGCAGCGCATTGGCGGC GTCTTTCATGTCGGTGACCACTTCCGTCAGCAGATGCGGGATACCTTCGTACACCGACAGCTCAAGCATT TTCGGGTCGATCATGATGAAACGAACGTCTTCCGGCTGCGCCTTATAGAGCATGCTGAGGATCATGGCGT TCACGCCGACCGATTTACCCGAACCAGTGGTACCGGCAACCAGCAGATGCGGCATTTTCGCCAGATCGGC CACCACCGGATCGCCGGCGATATCTTTGCCCAGCACCACGGTAAGCGGCGATGGGTTCTCGCGGAATTTC GGACAATCGAGCACTTCGCGCAGGTATACGGTCTGGCGTTTTTTGTTCGGTAATTCCAGGCCAACGTAAG GTTTACCCGGAATAACTTCCACCACACGCACCGCCACGGTCGACAGCGAACGCGCAAGGTCGCGCGACAG GTTAGAGATACGCGCGGCCTTCACCCCCGGCGCGAGGTTCAGCTCGAAACGAGTGATCACCGGACCCGGC GAGTAGTTCACCACATCCGCTTTAATGCGGAAATCGGCGAGACGCGCTTCGACCAGACGCGCCATCTGCT CAAGCGCAAAGGTATCAACAGGTTCAACTTCGCTCGGCGGTGGCGTCAAGAGATCCAGCGACGGCAGCGG CGTTGTTGGTCTTTGCAGCGGACGGCTGTCGCCATTACGCATCAGTAGCGGATGAATAAGGCTATCCTGC GGCGACGGCGCGGGCTGCTGAGCAACCGGCTGTTGTTGCTGCATTGGCTGCTGCGCAGGTTGATAAGCCT GCGGTTGCGGAGCTACCGGCTGATGGTGTACGGGCGGCTGCGCAGGTTGATAACCCTGCTGTGGCGCGGC TGCCGGTTGTTGATAATGCTGAGCCGGTTGCTGGGGCTGCACTTCCGGCGTCGGCGTAAACAACGGCTCG CTTGGACCATCATTGACCAGCGTTTTCATCGGCGAGAACTCATAGTCCGCCGGTGAGAAGGGATTGGCTC CCGGCGGCTGCTCGCTGGCATAGCGCTGCTGCTGGGTCGCGGCAAACTGGCGCGCCAGTTCGGCTTCAGC GGCAGCGTCTTCGTCCTGCTCATCGCTTTCGGATTCCCAGGACTCGCCATAGCGCTGTTGCTGGGTAGCG GCAAACTGACGCGCCAGCTCGTCCTGTTCCAACGCATCGGCTTCTTCGTCGCTCAGCGGCTCATTATCGT AATGATGTTCAAGCTCGGCCCGACGCGCGCGCTCTTCAGCAATACGCTGAGACGGCAGCTTAATGCCATA GGAAGCAAGCTCCCGACGCGTCGGCACACGGACGCGATTCGGACGCGGCAATTTCGGACCAATGCCTTCT TTTACCTGTACCCGCGGGCCGCTGGATGCCGGCTGAAAACTGGCGCTGCGTCAGCGGCGGTTGACGCCAC TGAGGCGGCTGCGGCTGCGCTGCCAGAAGTGGTGGCCTGATGAACGCCTGCGGCGACGGCCGTCACGGCG GCGGCATCAACTGACGGTTTGGATGGGGCAGCCGGGGTGGTGATCGGTTTGGTCGCCACCGGGCTCGCCG GTTCAGGGATTGGCTGATACCAGGATTCCAGCAACTCACGCTCGCGCGCGCGCTTCTCTTCGACTTCCTC GAAGTAGTACATCGGCGGGCGTTTAGTTTCTTCCTGAGGAGTCTCAGGCTCAGCGGCTGGCGCCGGTTCC TGATGATAAACAGGTTGTTGAACAGCCGGTTCAGGCTGGTATATCGGCTGCTGCGGATGCGCGGATTCCG GCTGGTAAACCGGTGGCTGCTGCGGCGCATACTCAGGCTGATACACAGGCTGTTGTGGATGCGCGGCTTC CGGCTGGTAAACCGGCGGCTGCTGCGGCGCATACTGAGGCTGATACGCCGGCTGCTGTGGATGCGCGGCT TCCGGCTGATAAACCGGCGGCTGCTGCGGCGCATACTCAGGCTGATACGCTGGCTGCTGTGGATGCGCGG CTTCCGGCTGGTAAACCGGCTGCTGCTGCGGCGCGTATTCCGGCTGATACACTGGCTGCTGCGGATGCGC GGATTCCGGTTGATAAACCGGCGGCTGCTGCGGCGCATACTCAGGCTGATACGCCGGCTGCTGAGGATGC GCGGCTTCCGGTTGATAAACCGGCGGCTGCTGCGGCGCATATTCAGGCTGATACACCGGTGGTTGCAGGT GAGCGGCCTCCGGTTGGTATGCCTGACCTGTCCCCTGCTCCGCCCATGCCTGCGGCGCAACGACAGCGGC GGAGGCGGCGCCGATCGGGTCGGCCACCGTATGGCCGTTCAGTAGCGGATCGTAAGGGTCTAAATCGCCA GGACGCGCGGCGCTGGCGCCTGAGAACAGGACATCATCCGCAGCGACAGGCGCGCCGCTGGCGCTGTATT GTACTGCTTCCGCATCATCCATACGTTTACCGGAGAACAGCGCGGCATCGGTTTTACGCCCCATCGGGTT GGCGAACTTTTCCGCCAGACGCTTACGACGCGCTAGCGCGCTGCGTAAGATGCGGGCGCGACGCGATTCC CGCGGCTGTGCGGTATCGTCGTCTTCTTCATCTTCATATTCATCATCTTCATATTCCCCTTCATCAACCC AGGTATCGTCCCGACGGGTACGATTACTGGCAAAGGTCAGAATAGAAAGGATTGCGCCGCCGAGTTTCTC GGCAATGCTGACCCATGACCAGCCGGTAAACAGCGTTAAACCCGCGGCCCAGATACAGAGCAAGGCGATA GTGCCGCCGCTGCTGTGCAGCAAGGGTTGTAAGGTGGTGCTAAGCAGGCTGCCAATGACGCCGCCGGAGG CAAAGTACCAGATATCGTCGGCGTTAATTGCCGCCAGGCCGCAGGAGGTGAGGATCAGCGCCAGCGCGCC GATCAGGCGCAACGAAACAGCGAAGTAATCGACATACTCGTCATTTTCCTGATGACGCCATGCAAACCAG CAGCCGCCGATGATGATCACGGGGATGGTGTAGGCCATTACGCCAAAGATGAAAAATAACGTGTCCGCCA GCCACGCGCCGGGCATGCCGCCCAGATTATGGATAGGCTCATGCCAGGCGGTCTGTGACCAACTGGGATC GGATGGATTAAAGCTCAGTAATGCCGCCATCAGCCAGATGGCAAAAAGAGAGCAAAGGATGAGTAACGCC TCAAGAACGCGGCGCCCGCTGCTTAGCTTCGTTAGTTTGACTTCTTTGTCTTCGGTGTATTCCTGGCTCA AGAAAGGCTCTCCAGGTATCAGGCAATTTCCTGCCTGCTGCTAAAACGGACAACAGCGCCGGGTCTCCCC GGCACTGTTGCTGTATGGATTAACAGGAGTGTAATCAAACTACGTCGATTTTGCACCTGTTCCGTGTTAG CGCGTCTTGATTACCAGACGATTACTCTGCTTGACTTCTTCCATAACCACGTAGGTACGGGTGTCGTTTA CGCCCGGCAGGCGCAGCAGGGTTTCGCCCAGCAATTTACGATACGCTGACATGTCCGGTACGCGGGTTTT CAACAGATAGTCAAAATCACCGGATACCAAGTGACACTCTTGAATTTCTTCAAGTTTTTGTACTGCGGCG TTAAATTGCTCAAACACATCCGGCGCACCACGATTCAGAGTAATCTCAACAAATACCAGAAGTGATGCAT CCAGATAATGCGGGTTGAGCAGCGCCGTATAGCCCTGAATAAAACCCTGTCTTTCCAGCCGACGCACGCG CTCAAGGCAAGGCGTCGGAGAAAGTCCCACCCGTTTGGAAAGCTCGACGTTGGAAATACGCCCGTCTTTT TGCAGTTCATTCAGAATGTTACGATCGATGCGGTCGAGATCTTTGCCAGGGCGTTTCTTGCTATCTACCA TTATTATTGTCTCTCTGTATTCCTTCCCTACTCCTGTTCTGACTCTGCGCCTTCACTGCCAGAGCCCATC CCGTTATTACCCGTACGACGTTGAGTAACCCCAGGGGTACGTGAGAAGCCCGTTGCCTGATGGCAGTCAC CGACATCACGCATGGCGTCTGTCCACACCATGCGTAGATTTCGCTGACCCGGATAAAAATGGCATTTGCG TGCATGAACATTCGCCACACGCGAAACACTGCTTTTCTTCTTCCATGAATGTTTTCGCAAAAGCACAGGG GATTGTCAAAGCAAAACATCGATTTTTAGTACAAGATGCCAGATATTCATCATCAACCCCCTCTGAATCT CATGTTTTCATCTTATAATCAGGGCGCTAACAGTAGAATTAATTATATTTTCCGCTCGTTAAATCGCCAA TCCATCGGCGGGTTCTATTGCACATATCGTTAACAAAATCGCTACGCTCTTTTTTTACGCCCGCAAATTC CCTACAATCCAGCCCAATGTATGCCAATAAAATATGGGGATCTCATGGGCACAGCCAAACACAGTAAACT GCTTATTCTAGGTTCTGGACCTGCAGGATATACCGCGGCGGTCTATGCTGCGCGCGCAAACCTGCAGCCG GTGCTGATCACCGGCATGGAAAAAGGCGGTCAGCTGACACCACCACTGAAGTGGAAAACTGGCCAGGCGA CCCAAACGATCTGACCGGTCCGCTGCTCATGGAACGTATGCACGAGCATGCCACCAAGTTCGAAACTGAA ATTATTTTCGACCATATCAGCAGCGTCGATCTGCAGAACCGTCCGTTCCGCCTGGTCGGCGACAGCGGCG AGTACACCTGTGACGCGCTGATTATCGCTACCGGCGCTTCCGCCCGTTATCTGGGGCTGCCTTCTGAAGA AGCTTTCAAAGGACGCGGCGTCTCTGCCTGCGCCACCTGCGACGGTTTCTTCTATCGTAACCAGAAAGTC GCGGTCATCGGCGGCGGCAACACGGCGGTTGAAGAAGCGCTGTATCTGTCCAACATCGCTGCTGAAGTGC ATCTGATCCACCGTCGCGACACCTTCCGTGCGGAAAAAATCCTGATCAAGCGCCTGATGGATAAAGTGGA AAGCGGCAATATCGTGCTGCACACCGATCGCACCCTGGAAGAAGTCACCGGCGACCAGATGGGCGTCAGC GGGCTGCGTCTGCGCGATACTAAAAATAGCGATAACGTTGAAACGCTGGACGTCGCCGGTCTGTTTGTCG CCATTGGACACAGCCCGAACACCGCTATCTTTGAAGGTCAGTTAGCGCTGGAAAACGGTTATATCAAAGT ACAATCCGGCATCCACGGCAACGCCACGCAAACCAGTATCCCTGGCGTGTTCGCCGCGGGCGACGTGATG GACCATATCTACCGTCAGGCGATTACCTCCGCCGGCACCGGCTGTATGGCGGCGCTGGACGCGGAACGCT ATCTGGATGGGTTAGCTGACGCTTGCAAATAATCTTTACAAGTCAGTAACAAAGGTAAAGAAGGCGACGA AAAGTCGCCTTTATTTTTGCCCCGTTGTAACATTGCCGTGCCCAAAAATCTCATAACGACACCTGCTAAG CGCGCAATGAATAAAACCCGTCAACAAGAGTTAACCCGCTGGTTAAAAGAAAAAAGCATTATCTCCCGTC GCTGGTTGATGATTTCTCGCCTGCTGGGCGTCGTGAGCGGTCTATTGATCGTCGCTCAGGCGTGGTTCCT GGCGCGTATACTTCATCGAATGATAATGGAAAATATCCCGGCGACGGCGCTGCTGCTGCCGTTTACCTTG CTGGCGCTGGTGCTGATCCTGCGCGCCTGGGTGGTGTGGCTACGCGAACGCGTCGGCTTCCACGCCGGCC AGCATATCCGTTATGAAATTCGCCGCCAGGTGCTGGACCGCCTTCAGCAGGCGGGCCCGGCCTGGATTCA GGGAAAACCCGCCGGCAGTTGGGCGACGCTCATCCTTGAGCAAATCGACGATATGCATGATTACTACGCG CGCTATCTGCCGCAGATGACGCTGGCCGCCTGCGTGCCGCTGCTGATTGTTATCACTATCTTCCCCAGCA ACTGGGCAGCCGCGCTAATTTTACTCGGCACCGCCCCGCTGATCCCGCTCTTTATGGCGCTGGTCGGGAT GGGCGCCGCCGATGCTAACCGGCGCAATTTCCTTGCGCTCGGTCGCCTCAGCGGTCACTTCCTCGACCGT CTGCGCGGCATGGAGACGCTGCGTCTGTTCAACCGCGGCGAGGCGGAAATTAACAATATCCGCGATGCGT CGCAGGATTTCCGCCAGCGGACGATGGAAGTCCTGCGCCTGGCTTTTCTCTCCTCCGGCGTGCTGGAGTT CTTTACTTCGCTCTCTATCGCGCTGGTGGCGGTCTATTTCGGTTTTTCCTACCTCGGCGAGCTCGACTTC GGCCACTACGGCGTCGGCGTCACGCTGATGTCCGGTTTTTTAACCCTGATTCTGGCGCCGGAGTTTTTCC AGCCGCTACGTGATTTAGGCACATTTTACCATGCCAAGGCGCAGGCCATTGGCGCAGCGGATAGCCTGAA GACTTTTATGGAAACGCCGCTGGCGCAGGCTGAACGGGGCGAGAAAACGCTAAGCGATCATGAACTGATT CGCCTCGAAGCCCGCGATCTGATGGTGAAATCGCCGGATGGCAAAACGCTGGCAGGCCCGCTGAGTTTTA CCCTGAACGCTGGCGAGCGCGTGGTCCTGGTCGGCCAGAGCGGTTCCGGTAAAAGCTCGCTGCTGAATAC GCTGACCGGCTTTCTTCCCTATGAAGGTTCGCTACAGGTTAACGGCGTGGAGCTGCGCGATCTCGATGCT GAACGCTGGCGTCGGCTAATTAGCTGGGTCGGTCAAAACCCCCAACTGCCCGCCGCCACGCTGCGTGAAA ACGTGCTGCTAGCGTGGCCAGAAGCCACGGAAGCGCAACTGCAGCTAGCCCTGGATAAGGCCTGGGTAAG CGAGTTTATTTCCCAATTGCCACAAGGTATTAATACCCCGTTAGGCGATCAGGCTGGCGGCCTCTCGGTC GGCCAGGCTCAGCGTATTGCCGTTGCGCGCGCGCTGCTGGTGCCGTGCCGCCTGTTGCTGCTTGATGAAC CAGCGGCCAGCCTTGACGCTCACAGCGAACAGCGTGTGATGCAGGCGCTATCTAACGCTTCTACCCAGCA GACCACGCTGATGGTTACTCACCAACTGGCAGGACTGGCCGAGTGGGATGCTATTTGGGTGATGCAGAAT GGACAGATTGTCGAGCAAGGCGGCTATGCGCAGCTTTCTGCCGCTGGAGGCGCGTTTGCCTCACTGTTAG CCCATCGCCAGGAGGAAATTTAA
Region Details
| Region | 1 |
| Region Length | 9.6Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 235461-245073 |
| # tRNA | 0 |
| # Total Proteins | 8 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 75% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Bacill_G_NC_023719(3) PHAGE_Bacill_SP_15_NC_031245(2) PHAGE_Plankt_PaV_LD_NC_016564(1) PHAGE_Clostr_phiCTP1_NC_014457(1) PHAGE_Mycoba_Courthouse_NC_023690(1) PHAGE_Mycoba_Wanda_NC_022067(1) PHAGE_Mycoba_Minerva_NC_026584(1) PHAGE_Lactoc_949_NC_015263(1) PHAGE_Bacill_SPbeta_NC_001884(1) PHAGE_Mycoba_Redno2_NC_022066(1) PHAGE_Vibrio_vB_VpaS_MAR10_NC_019713(1) PHAGE_Lactoc_phiL47_NC_023574(1) PHAGE_Mycoba_MiaZeal_NC_028953(1) PHAGE_Lactoc_WRP3_NC_027341(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 37.5% |
| GC % | 57.00% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|LR134125.1| Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5. 770373, gc%: 55.22%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 8 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(235461..236252) | PHAGE_Clostr_phiCTP1_NC_014457: putative DNA polymerase III; NCTC10006_03732; phage(gi304360727) | 5.65e-10 | Showinfo_outline |
| 2 | complement(236261..236872) | Outer membrane lipoprotein carrier protein LolA; NCTC10006_03733 | 0.0 | Showinfo_outline |
| 3 | complement(236995..239151) | PHAGE_Mycoba_Minerva_NC_026584: FtsK; NCTC10006_03734; phage(gi764159392) | 8.76e-107 | Showinfo_outline |
| 4 | complement(239172..241061) | PHAGE_Bacill_SP_15_NC_031245: sigma factor for late transcription; NCTC10006_03735; phage(gi100065) | 2.84e-05 | Showinfo_outline |
| 5 | complement(241197..241691) | Leucine-responsive regulatory protein; NCTC10006_03736 | 0.0 | Showinfo_outline |
| 6 | 242225..242404 | PHAGE_Lactoc_phiL47_NC_023574: ribonucleotide diphosphate reductase alpha subunit; NCTC10006_03737; phage(gi589890899) | 8.98e-05 | Showinfo_outline |
| 7 | 242371..243192 | PHAGE_Bacill_G_NC_023719: gp344; NCTC10006_03738; phage(gi593777800) | 1.22e-55 | Showinfo_outline |
| 8 | 243307..245073 | PHAGE_Bacill_SPbeta_NC_001884: ABC transporter; NCTC10006_03739; phage(gi9630145) | 1.60e-19 | Showinfo_outline |
Sequence
>complement(235461..236252)
[Klebsiellaaerogenes]
Sequence
>complement(236261..236872)
[Klebsiellaaerogenes]
Sequence
>complement(236995..239151)
[Klebsiellaaerogenes]
Sequence
>complement(239172..241061)
[Klebsiellaaerogenes]
Sequence
>complement(241197..241691)
[Klebsiellaaerogenes]
Sequence
>242225..242404
[Klebsiellaaerogenes]
Sequence
>242371..243192
[Klebsiellaaerogenes]
Sequence
>243307..245073
[Klebsiellaaerogenes]
Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 770373 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: NCTC10006_03732 (Region 1)
Locus: NCTC10006_03732ORF Start: 235461
ORF Stop: 236252
Strand: Backward
Protein Sequence: MSNFSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAPGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLNQAMSDKARGYGGQDIILPDETRKAIAELVNGDARRALNTLEMMADMAENDDSGKRVLRAELLTEIAGERSARFDNKGDRFLRSYIRVT
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: NCTC10006_03732, putative DNA polymerase III, phage(gi304360727), PHAGE_Clostr_phiCTP1_NC_014457
Homolog/Ortholog E-Value: 5.65e-10
Locus 2: NCTC10006_03733 (Region 1)
Locus: NCTC10006_03733ORF Start: 236261
ORF Stop: 236872
Strand: Backward
Protein Sequence: MKKLAITCALLSGFVVSQVWADAAGDLKSRLDKVSSFHASFTQKVTDASGNAVQDGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKNATSNTPFMLIARNQSADWQQYNIKQNGDDFVLTPKSGNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDASKFTFTPPQGVTVDDQRK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: NCTC10006_03733, Outer membrane lipoprotein carrier protein LolA
Homolog/Ortholog E-Value: N/A
Locus 3: NCTC10006_03734 (Region 1)
Locus: NCTC10006_03734ORF Start: 236995
ORF Stop: 239151
Strand: Backward
Protein Sequence: MPRPNRVRVPTRRELASYGIKLPSQRIAEERARRAELEHHYDNEPLSDEEADALEQDELARQFAATQQQRYGESWESESDEQDEDAAAEAELARQFAATQQQRYASEQPPGANPFSPADYEFSPMKTLVNDGPSEPLFTPTPEVQPQQPAQHYQQPAAAPQQGYQPAQPPVHHQPVAPQPQAYQPAQQPMQQQQPVAQQPAPSPQDSLIHPLLMRNGDSRPLQRPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDCPKFRENPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDAVHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTMPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGGGGFDGGEELDPLFDQAVNFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: NCTC10006_03734, FtsK, phage(gi764159392), PHAGE_Mycoba_Minerva_NC_026584
Homolog/Ortholog E-Value: 8.76e-107
Locus 4: NCTC10006_03735 (Region 1)
Locus: NCTC10006_03735ORF Start: 239172
ORF Stop: 241061
Strand: Backward
Protein Sequence: MSQEYTEDKEVKLTKLSSGRRVLEALLILCSLFAIWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIIGGCWFAWRHQENDEYVDYFAVSLRLIGALALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCIWAAGLTLFTGWSWVSIAEKLGGAILSILTFASNRTRRDDTWVDEGEYEDDEYEDEEDDDTAQPRESRRARILRSALARRKRLAEKFANPMGRKTDAALFSGKRMDDAEAVQYSASGAPVAADDVLFSGASAARPGDLDPYDPLLNGHTVADPIGAASAAVVAPQAWAEQGTGQAYQPEAAHLQPPVYQPEYAPQQPPVYQPEAAHPQQPAYQPEYAPQQPPVYQPESAHPQQPVYQPEYAPQQQPVYQPEAAHPQQPAYQPEYAPQQPPVYQPEAAHPQQPAYQPQYAPQQPPVYQPEAAHPQQPVYQPEYAPQQPPVYQPESAHPQQPIYQPEPAVQQPVYHQEPAPAAEPETPQEETKRPPMYYFEEVEEKRARERELLESWYQPIPEPASPVATKPITTPAAPSKPSVDAAAVTAVAAGVHQATTSGSAAAAASVASTAADAAPVFSRHPAARGYR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: NCTC10006_03735, sigma factor for late transcription, phage(gi100065), PHAGE_Bacill_SP_15_NC_031245
Homolog/Ortholog E-Value: 2.84e-05
Locus 5: NCTC10006_03736 (Region 1)
Locus: NCTC10006_03736ORF Start: 241197
ORF Stop: 241691
Strand: Backward
Protein Sequence: MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: NCTC10006_03736, Leucine-responsive regulatory protein
Homolog/Ortholog E-Value: N/A
Locus 6: NCTC10006_03737 (Region 1)
Locus: NCTC10006_03737ORF Start: 242225
ORF Stop: 242404
Strand: Forward
Protein Sequence: MGTAKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTPPLKWKTGQATQTI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: NCTC10006_03737, ribonucleotide diphosphate reductase alpha subunit, phage(gi589890899), PHAGE_Lactoc_phiL47_NC_023574
Homolog/Ortholog E-Value: 8.98e-05
Locus 7: NCTC10006_03738 (Region 1)
Locus: NCTC10006_03738ORF Start: 242371
ORF Stop: 243192
Strand: Forward
Protein Sequence: MENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHISSVDLQNRPFRLVGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIAAEVHLIHRRDTFRAEKILIKRLMDKVESGNIVLHTDRTLEEVTGDQMGVSGLRLRDTKNSDNVETLDVAGLFVAIGHSPNTAIFEGQLALENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADACK
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: NCTC10006_03738, gp344, phage(gi593777800), PHAGE_Bacill_G_NC_023719
Homolog/Ortholog E-Value: 1.22e-55
Locus 8: NCTC10006_03739 (Region 1)
Locus: NCTC10006_03739ORF Start: 243307
ORF Stop: 245073
Strand: Forward
Protein Sequence: MNKTRQQELTRWLKEKSIISRRWLMISRLLGVVSGLLIVAQAWFLARILHRMIMENIPATALLLPFTLLALVLILRAWVVWLRERVGFHAGQHIRYEIRRQVLDRLQQAGPAWIQGKPAGSWATLILEQIDDMHDYYARYLPQMTLAACVPLLIVITIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALGRLSGHFLDRLRGMETLRLFNRGEAEINNIRDASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGELDFGHYGVGVTLMSGFLTLILAPEFFQPLRDLGTFYHAKAQAIGAADSLKTFMETPLAQAERGEKTLSDHELIRLEARDLMVKSPDGKTLAGPLSFTLNAGERVVLVGQSGSGKSSLLNTLTGFLPYEGSLQVNGVELRDLDAERWRRLISWVGQNPQLPAATLRENVLLAWPEATEAQLQLALDKAWVSEFISQLPQGINTPLGDQAGGLSVGQAQRIAVARALLVPCRLLLLDEPAASLDAHSEQRVMQALSNASTQQTTLMVTHQLAGLAEWDAIWVMQNGQIVEQGGYAQLSAAGGAFASLLAHRQEEI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: NCTC10006_03739, ABC transporter, phage(gi9630145), PHAGE_Bacill_SPbeta_NC_001884
Homolog/Ortholog E-Value: 1.60e-19
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download