Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1575210465 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1575210465.PHASTER.zip
gi|00000000|ref|SGOL01000002.1| Klebsiella pneumoniae strain 53 plasmid pKp_EN53_4_IncFIIK, whole 95757, gc%: 53.95%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 10Kb | incomplete | 50 | 10 | 4641-14698 info_outline | PHAGE_Salmon_SJ46_NC_031129(4) | 52.24% | Show info_outline |
Region DNA
>1 4641-14698 TTACATTTCAAAAACTCTGCTTACCAGGCGCATTTCGCCCAGGGGATCACCATAATAAAATGCTGAGGCC TGGCCTTTGCGTAGTGCACGCATCACCTCAATACCTTTGATGGTGGCGTAAGCCGTCTTCATGGATTTAA ATCCCAGCGTGGCGCCGATTATCCGTTTCAGTTTGCCATGATCGCATTCAATCACGTTGTTCCGGTACTT AATCTGTCGGTGTTCAACGTCAGACGGGCACCGGCCTTCGCGTTTGAGCAGAGCAAGCGCGCGACCATAG GCGGGCGCTTTATCCGTGTTGATGAATCGCGGGATCTGCCACTTCTTCACGTTGTTGGGGTCTGACGCTC AGTGGAACGAAAACTCACGTTAAGCAACGTTTTCTGCCTCTGACGCCTCTTTTAATGGTCTCAGATGTCC TTTGGTCACCAGTTCTGCCAGCGTGAAGGAATAATGGCCGAGCATATTGATATGTCCGTGGCAAAGCGGG GAGAGGCGTGCGATATCTTCATCATTCAGTGTTTCACCCTGCGCCCGGAGATGATCCAGAGCTGCCTGCA TATAAATAGTGTTCCATAACACGACGGCGTTAGTGACCAGCCCCAGAGCTCCCAACTGATCTTCCTGACC GTCGGTATATCGTTTTCTTATCTCACCTTTTTGACCGTGACAGATGGCTCTGGCAACTGCATGACGGCTT TCTCCCCGATTAAGCTGGGTCAGAATGCGCCGGCGGTAATCTTCATCATCAATATAATTAAGCAGATACA GCGTTTTGTTGATGCGCCCCACTTCAATGATTGCCTGAGTCAGTCCGGAGGGACGTTCACTTTTCAGCAA TGAACGGACCAGCACTGAGGCCTGTACTTTGCCCAGCTTCAGGGAGCCTGCGGTCCGGATCATTTCGTCC CACTGAAGGACTATTTTTCGGGGATCTGATTGCCCTCTGGCAATATCATTCAGCACGCCATAGTCGGCAT CATGGTCCATTCGCCAGAAAACCGAAGCACCGGCATCAGCCAGGCGTGGAGAAAACTGGTATCCCAGCAG CCAGAAAAGGCCAAAGACAAGATCGCTGGCACCTGCCGTATCGGTCATAATTTCGGTTGGATTCAGCCCG GTCTCCTGTTCCAGAAGGCCTTCCAGCACAAAGATAGAGTCCCTCAGCGTCCCCGGTATAACGATGCCAT GAAAGCCGGAATACTGATCGGACACAAAGTTGTACCAGGTGATCCCTCTGTTATTACCAAAGTATTTGCG GTTCGGTCCGGCATTGATTGTTCTGACTGGCGTAACAAAGCGCATTCCATCTGCAGATGCCACTTCTCCT CCACCCCATATCTGTGCCAGTGGCAGCGTTGCCTGAAAATCAACCAGTCTGGCATTAGCGCTGGTGATAG TTTCAGCCCGCAGATAGTTCGCTTTTGTCCAGTTCAGCCGGTGTCGGGTCAGTGCAGGAACATTTGATCT GATCAGTGGTTCCAGACCGATATTGCAGGCTTCAGCCATCAGCACGGCGCTGATGCTGACGGGCAGATCA TCAACTCTGGCACTGGCTTCACTGGCATGGAAAAACTCATCAGCAAATCCGGTATGGGCGTTAATTTCGA GCAGCAACTCCGTTAAATCCACCGGAGAGAGCAGATCACTGATCATTTTGCTCAGTCGTTTCAGACTGTC CGGCTCATCAAGACTGGCGAGGGGAGAAATTGTCAACCGGGGCTTCGGGCCAGAAACATCGAGTTCGACA GCCTCATTTTCGCCAAGACGTGCAGCAACCTGTCTGTAACGACTATCAAGCTGATGGCCCAGAGATTTTA TTGCTTCCTGCGGGTCTGTCGGGTGCCCCAAAGAACGATAAACCTTAATCCGGTTTGCCTGCCAGTCAGC ACCCTGTAGTAATCTTGCACGAGGATCTCCCCACCGGTTACTGCCGGTAACGTAGACATCCCTCCGCCTC AGACTATCCTGCAGTTTACTGAGAAAGCAGAGCGTGTATCCCCTGCGGGTGATATGTTTTTCCTTGTTAA TCACCAGCCGTTTCCATGACCGACTGATAATTTCCGTTGGTGCGTCGTCAAAAAACTGCCGCCGTGAGCT GAACTCCCGGCTGAGGTAGTCACAGGCATTCAGAGTGGTAACCCCGGCAGGTGCGGATGAAAATTTAACG GTATTCAGCAGATGGGGCAGGAAACGACGAACGCGCCCGTACTGCTCCACCATTTCTTCATGAAAATTAT CGTCTGAGGGCCGGGCAATTTCACGGACAAGCGTGATGATTTCAGCCAGCTTTTGCCTTGGGATGTAGCT GAACACCTCAGCACGAATCGATTCGTCCGGTGTTTCTTCTTTCAGCAGGTACGAACATGCGCTGGCGAGC GCCAATGCAGATTTATCCAGATCCTTCAGCGAGCGGAGCCGTTTTTTCTGCCCAATCTTTCTGGCGTCAC GGATGATAACGGCCAGCATGGCGTCCAGAACGTCCAATGCATCATCCAGCGCCAGCGTTTCCCATGCAAG GACAAAGGCAACCAGAACCGCCATCCTTTTCTGCGGTGACATCCTGGCAATATTGAACACCGAAGTCATA CCAGCATAACGTGCGAGATTTTTCAGGCGCACAGCCGGGAGTGTACTCAGGTTTTCAGCATGCAGGCCAA AATCGTTCAGAGTTTTCCAGCGTTCAATTGCTTCATTAAACGCCGGACCACTGATGGTCACAGGGCCCTT TTTCAGTGATTCCAGTAAAGACAGGCGGCTGCAATCAGTTGGCCCCAGCAGCATCTCCAGCTGTGAACGC TGTTCGGCTGACGGTATCAGTGCCAGTTTGTTCCACAGGCGCAACGTCGCCTTTTCCCTTACCTCTGAAA TCAACCGGGTCAGCGTAGTGGCTCCGGGGAGAATAATACGATGTTGCATAAGCCACCCTGTCGCCAGATC GAAAAGCAGGCCAGGACGTTCGTTGCTTATCCAGCTCCGGGTATATAAAAGACGGGTAAGGCGAAATGTC CAGGGCCAGGCAAATTCACGATACTGATAGTGCTGACGTATCAGCGCTGCATGCTCACGGCGGGTATTTT CCCTCTGACCGTATTCTGCAAGAACGGTGATATCACGAATCCCGAGCTGTCTGGCGGTAAAATGCCGGAC GCCGGAAGGAATATGATTCATATCGGTGAGGAAGGTGCCCAGAAAACGGACACATCCAATTTGCAGGGCA ATGCCCAGACGGTTGTGATCACCTCTGCTTTTTCCGATAAATTCCTTGTCTGCTTCATCAAGGTGAAAAT ATCGTGCCAGCTGAAGCTCATCCGGTTCACCGGTGAATCTGCCATAGCTTTCAGTCTGCTCAGTGGTCAG AAAGTCAACGGGCATATCGGCCTCCCTGCCTGACGGGCATTTAGTAACATTTTTCCAACCGTACGAAATG TTATAAATTATCAGACATAGTAAAACGGCTTCGTTTGAGTGTCCATTAAATCGTCATTTTGGCATAATAG ACACATCGTGTCTGATATTCGATTTAAGGTACATTTTTATGCGAATTTTTGGTTATGCGCGGGTCTCAAC CAGCCAGCAGTCCCTCGATATTCAGATCAGAGCGCTCAAAGATGCAGGGGTAAAAGCTAACCGCATCTTT ACCGACAAGGCATCCGGCAGTTCAACAGATCGGGAAGGGCTGGATTTGCTGAGGATGAAGGTGGAGGAAG GTGATGTCATTCTGGTGAAGAAGCTCGACCGTCTTGGCCGCGACACCGCCGACATGATCCAACTGATAAA AGAGTTTGATGCTCAGGGTGTAGCGGTTCGGTTTATTGACGACGGGATCAGTACCGACGGTGATATGGGG CAAATGGTGGTCACCATCCTGTCGGCTGTGGCACAGGCTGAACGCCGGAGGATCCTAGAGCGCACGAATG AGGGCCGACAGGAAGCAAAGCTGAAAGGAATCAAATTTGGCCGCAGGCGTACCGTGGACAGGAACGTCGT GCTGACGCTTCATCAGAAGGGCACTGGTGCAACGGAAATTGCTCATCAGCTCAGTATTGCCCGCTCCACG GTTTATAAAATTCTTGAAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAAT AATGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTC TAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAA GGAAGAGTATGAGTATTCAACATTTCCAAACAAAGTTAGGCATCACAAAGTACAGCATCGTGACCAACAG CAACGATTCCGTCACACTGCGCCTCATGACTGAGCATGACCTTGCGATGCTCTATGAGTGGCTAAATCGA TCTCATATCGTCGAGTGGTGGGGCGGAGAAGAAGCACGCCCGACACTTGCTGACGTACAGGAACAGTACT TGCCAAGCGTTTTAGCGCAAGAGTCCGTCACTCCATACATTGCAATGCTGAATGGAGAGCCGATTGGGTA TGCCCAGTCGTACGTTGCTCTTGGAAGCGGGGACGGATGGTGGGAAGAAGAAACCGATCCAGGAGTACGC GGAATAGACCAGTTACTGGCGAATGCATCACAACTGGGCAAAGGCTTGGGAACCAAGCTGGTTCGAGCTC TGGTTGAGTTGCTGTTCAATGATCCCGAGGTCACCAAGATCCAAACGGACCCGTCGCCGAGCAACTTGCG AGCGATCCGATGCTACGAGAAAGCGGGGTTTGAGAGGCAAGGTACCGTAACCACCCCAGATGGTCCAGCC GTGTACATGGTTCAAACACGCCAGGCATTCGAGCGAACACGCAGTGTTGCCTAACCCTTCCATCGAGGGG GACGTCCAAGGGCTGGCGCCCTTGGCCGCCCCTCATGTCAAACGTTAAACATCATGAGGGAAGCGGTGAT CGCCGAAGTATCGACTCAACTATCAGAGGTAGTTGGCGTCATCGAGCGCCATCTCGAACCGACGTTGCTG GCCGTACATTTGTACGGCTCCGCAGTGGATGGCGGCCTGAAGCCACACAGTGATATTGATTTGCTGGTTA CGGTGACCGTAAGGCTTGATGAAACAACGCGGCGAGCTTTGATCAACGACCTTTTGGAAACTTCGGCTTC CCCTGGAGAGAGCGAGATTCTCCGCGCTGTAGAAGTCACCATTGTTGTGCACGACGACATCATTCCGTGG CGTTATCCAGCTAAGCGCGAACTGCAATTTGGAGAATGGCAGCGCAATGACATTCTTGCAGGTATCTTCG AGCCAGCCACGATCGACATTGATCTGGCTATCTTGCTGACAAAAGCAAGAGAACATAGCGTTGCCTTGGT AGGTCCAGCGGCGGAGGAACTCTTTGATCCGGTTCCTGAACAGGATCTATTTGAGGCGCTAAATGAAACC TTAACGCTATGGAACTCGCCGCCCGACTGGGCTGGCGATGAGCGAAATGTAGTGCTTACGTTGTCCCGCA TTTGGTACAGCGCAGTAACCGGCAAAATCGCGCCGAAGGATGTCGCTGCCGACTGGGCAATGGAGCGCCT GCCGGCCCAGTATCAGCCCGTCATACTTGAAGCTAGGCAGGCTTATCTTGGACAAGAAGATCGCTTGGCC TCGCGCGCAGATCAGTTGGAAGAATTTGTTCACTACGTGAAAGGCGAGATCACCAAGGTAGTCGGCAAAT AATGTCTAAAACAAAGTTATGCACCTATTAAGCGCACAGCGGAGCAATGAAGGATACCTTGATGAAAAAA ATTTTGCTGCTGCATATGTTGGTGTTCGTTTCCGCCACTCTCCCAATCAGTTCCGTGGCTTCTGATGAGG TTGAAACGCTTAAATGCACCATCATCGCAGACGCCATTACCGGAAATACCTTATATGAGACCGGAGAATG TGCCCGTCGTGTGTCTCCGTGCTCGTCTTTTAAACTTCCATTGGCAATCATGGGGTTTGATAGTGGAATC TTGCAGTCGCCAAAATCACCTACGTGGGAATTGAAGCCGGAATACAACCCGTCTCCGAGAGATCGCACAT ACAAACAAGTCTATCCGGCGCTATGGCAAAGCGACTCTGTTGTCTAGTTCTCGCAGCAATTAACAAGCCG TCTGGGAGTTGATCGGTTCACGGAATACGTAAAGAAATTTGAGTACGGTAATCAAGATGTTTCCGGTGAC TCGGGGAAGCATAACGGCTTGACCCAGTCATGGCTGATGTCGTCGCTCACCATATCTCCCAAGGAGCAAA TTCAGTTTCTTCTACGCTTTGTCGCGCATAAGCTGCCTGTATCCGAAGCGGCTTATGACATGGCGTATGC CACAATCCCGCAGTACCAGGCAGCCGAAGGATGGGCTGTACATGGAAAAAGCGGCAGCGGCTGGCTTCGG GACAATAACGGCAAGATAAATGAAAGTCGTCCGCAGGGCTGGTTCGTGGGCTGGGCTGAAAAAAACGGAC GGCAAGTTGTTTTCGCCCGATTGGAAATAGGAAAGGAAAAGTCCGATATTCCCGGCGGGTCTAAAGCACG AGAGGATATTCTCGTGGAATTACCCGTGTTGATGGGTAACAAATGATATGTGGCGTCATCGAGAGCAGAT GCATAACCCTGCGCTCGAGCGGACCTCGCGCATAAAGCCGCGCGAGTCCGCTCACCTTGAACGTTAGATG CACTAAGCACATAATTGCTCACAGCCAAACTATCAGGTCAAGTCTGCTTTTATTATTTTTAAGCGTGCAT AATAAGCCCTACACAAATTGGGAGATATATCATGAAAAGAGTTTGATGCTCAGGGTGTAGCGGTTCGGTT TATTGACGACGGGATCAGTACCGACGGTGATATGGGGCAAATGGTGGTCACCATCCTGTCGGCTGTGGCA CAGGCTGAACGCCGGAGGATCCTAGAGCGCACGAATGAGGGCCGACAGGAAGCAAAGCTGAAAGGAATCA AATTTGGCCGCAGGCGTACCGTGGACAGGAACGTCGTGCTGACGCTTCATCAGAAGGGCACTGGTGCAAC GGAAATTGCTCATCAGCTCAGTATTGCCCGCTCCACGGTTTATAAAATTCTTGAAGACGAAAGGGCCTCG TGATACGCCTATTTTTATAGGTTAATGTCATGATAATAATGGTTTCTTAGACGTCAGGTGGCACTTTTCG GGGAAATGTGCGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGA CAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCG CCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAA AGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTT GAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTGGCGCGGTAT TATCCCGTGTTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGA GTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATA ACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTT TTTTGCACAACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACC AAACGACGAGCGTGACACCACGATGCCTGCAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAA CTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAAGTTGCAGGACCACTTC TGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCTGGAGCCGGTGAGCGTGGGTCTCGCGG TATCATTGCAGCACTGGGGCCAGATGGTAAGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAG GCAACTATGGATGAACGAAATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGT CAGACCAAGTTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGT GAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGAC CCCTTGTTGAGGATTTTACCCAGAAACCGGTATGCAGCTTTGCTGTTACGACGGGAGGAGAGATAAAAAT CGACAGTGCGGCCCCGGCTGTCGACGGCCCGGTACAGATACGCCCAGCGGCCATTGACCTTCACGTAGGT TTCATCCATGTGCCACGGGCAAAGATCGGAAGGGTTACGCCAGTACCAGCGCAGCCGTTTTTCCATTTCA GGCGCATAACGCTGAACCCAGCGGTAAATCGTGGAGTGATCGACATTCACTCCGCGTTCAGCCAGCATCT CCTGCAGCTCACGGTAACTGATGCCGTATTTGCAGTACCAGCGTACGGCCCACAGAATGATGTCACGCTG AAAATGCCGGCCTTTGAATGGGTTCATGTGCAGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCAC CGACTATTTGCAACAGTGCCCATCGGCGTAGTAGTGGATGTGGTCGATGACAAAGCCGGTGCGGGTCAGC GTGCGCCGGAGGATCGGCAGAAAATCGACCAGGAACGAAGTAGCGCGTGTGACGACGGCCGGTACGCCGA CACGCGCCACGGCCTCGGCCCAGCGCGCGGCCGGCGGTTGGAGCAGGCCGTTGTGCACCGAACCGTGGTA GGTGCCGACCGCCAATGTGAGCCAGCGCTCTAGCTCGCGCAGCGTCAGGGCGGCCTTGTTTTCGGAATCG TAGTCGCCGCGCTGGTCAGGGTTGGAGAAGGTCGTTCCCGGCAGTTCGTCGTGAATCATCTGCATCGCCG TGCCGATGATCCGTTCCACGATGCCGCCATAGTGCGGCTGTCCCAGCGGGCGATAGTCCAGCCGGATGCC ATGCTGCTCGCAACCCCGGCGCAGGGCCTCGCTCTTGAACTCGGCCGCGTTGTCTAGGTAGAGCAGCAAG GGCTTGCCGCTCATCTGCCAATCCATTTCCACGTTCAGTCCTTCCAGCCAAGGGCGCTTGTCGCAGGCGA CATGCACGAGGCACAGGCCAACCGAAACGGCAGACGGCGCTTCCAGCGTGACGACCATGCCGAGCACGCA GCGGGTGAACACGTCGATGGCGAGGGTCAGGTACGGGCGGCCAATAGGTTGCCGGTCGCGGTCATCGACC ACGATCAGGTCGATGACCGTATGGTCTATCTGCACCTGCTCCAGCGGCGCGGTCACGGCAGGAGGCTCGC CGCCCACACCTTGTAGGTCACGAGCGGCATCCTGGCCTTCCCGCCGGCGGATGACCTTGCGCGGGTCAAG GCTAGCGATCCGTAAGGCCACGGTATTGCGCGCCGGCACTCGCAGTTTTTGAGCCTTGCACACCTGAGTG ACTTCGCGGTGAAAGGCCGCTAGGCTGCGCTTCTGCTTGGTCAGGAACCGCTTTTGCAGTAGCTCGTGGA TGACGCGCTCGACCGGTTCCGGCAAGCGCCCCTTACCTTTACCTCCACCGGACTGGCCGGGCACCAGATC CGTCACGAGGCCGCTGCCTTGCCGGGCACGCCGGATCAGAACGTATACCTGGCGCCGAGACAAGCCCAGC GCCTGAGCCGCCATATCGGCCGCTTCGTGCCCGACCGTCTCCGACTGCGCCAACGGACTGATGATCTCCG CACGACGGCGCGCACGCTCCCAAGCCTCATCAGGCAGAGTGGCCACGCCTTGTTCTGGAATCCGTGGGGT GTCCGTCGCCATGCTCACCTCGCTTTGGTGCACACGAGTATTGAGCAT
Region Details
| Region | 1 |
| Region Length | 10Kb |
| Completeness(score) | incomplete(50) |
| Specific Keyword | transposase,head |
| Region Position | 4641-14698 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 8 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 80% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 3 |
| Most Common Phage Name(hit genes count) | PHAGE_Salmon_SJ46_NC_031129(4) PHAGE_Staphy_SPbeta_like_NC_029119(3) PHAGE_Salisa_1_NC_017983(1) PHAGE_Erwini_ENT90_NC_019932(1) PHAGE_Sodali_phiSG1_NC_007902(1) PHAGE_Entero_Mu_NC_000929(1) PHAGE_Escher_pro483_NC_028943(1) |
| First Most Common Phage # | 4 |
| First Most Common Phage % | 40% |
| GC % | 52.24% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|SGOL01000002.1| Klebsiella pneumoniae strain 53 plasmid pKp_EN53_4_IncFIIK, whole 95757, gc%: 53.95%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 10 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(4641..4976) | PROPHAGE_Brucel_1330: transposase, putative; EXT45_00490; phage(gi23502708) | 9.43e-10 | Showinfo_outline |
| 2 | complement(5010..8015) | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; EXT45_00495; phage(gi100060) | 2.41e-130 | Showinfo_outline |
| 3 | 8179..8736 | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; EXT45_00500; phage(gi100036) | 3.74e-27 | Showinfo_outline |
| 4 | 8970..9524 | PHAGE_Staphy_SPbeta_like_NC_029119: bifunctional AAC/APH; EXT45_00505; phage(gi985761240) | 4.59e-16 | Showinfo_outline |
| 5 | 9594..10382 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1; EXT45_00510 | 0.0 | Showinfo_outline |
| 6 | 10442..11266 | class D beta-lactamase; EXT45_00515 | 0.0 | Showinfo_outline |
| 7 | 11466..11783 | PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; EXT45_00520; phage(gi100061) | 1.13e-08 | Showinfo_outline |
| 8 | 11966..12826 | PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; EXT45_00525; phage(gi100066) | 5.20e-57 | Showinfo_outline |
| 9 | complement(12976..13347) | PROPHAGE_Brucel_1330: transposase, putative; EXT45_00530; phage(gi23502708) | 9.16e-38 | Showinfo_outline |
| 10 | complement(13394..14698) | PROPHAGE_Brucel_1330: transposase, putative; EXT45_00535; phage(gi23501616) | 1.16e-33 | Showinfo_outline |
Sequence
>complement(4641..4976)
[Klebsiellapneumoniae]
Sequence
>complement(5010..8015)
[Klebsiellapneumoniae]
Sequence
>8179..8736
[Klebsiellapneumoniae]
Sequence
>8970..9524
[Klebsiellapneumoniae]
Sequence
>9594..10382
[Klebsiellapneumoniae]
Sequence
>10442..11266
[Klebsiellapneumoniae]
Sequence
>11466..11783
[Klebsiellapneumoniae]
Sequence
>11966..12826
[Klebsiellapneumoniae]
Sequence
>complement(12976..13347)
[Klebsiellapneumoniae]
Sequence
>complement(13394..14698)
[Klebsiellapneumoniae]
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 95757 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
Viewer Options
Click on a sequence to see details.
Locus 1: EXT45_00490 (Region 1)
Locus: EXT45_00490ORF Start: 4641
ORF Stop: 4976
Strand: Backward
Protein Sequence: NNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: EXT45_00490, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 9.43e-10
Locus 2: EXT45_00495 (Region 1)
Locus: EXT45_00495ORF Start: 5010
ORF Stop: 8015
Strand: Backward
Protein Sequence: MPVDFLTTEQTESYGRFTGEPDELQLARYFHLDEADKEFIGKSRGDHNRLGIALQIGCVRFLGTFLTDMNHIPSGVRHFTARQLGIRDITVLAEYGQRENTRREHAALIRQHYQYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATGWLMQHRIILPGATTLTRLISEVREKATLRLWNKLALIPSAEQRSQLEMLLGPTDCSRLSLLESLKKGPVTISGPAFNEAIERWKTLNDFGLHAENLSTLPAVRLKNLARYAGMTSVFNIARMSPQKRMAVLVAFVLAWETLALDDALDVLDAMLAVIIRDARKIGQKKRLRSLKDLDKSALALASACSYLLKEETPDESIRAEVFSYIPRQKLAEIITLVREIARPSDDNFHEEMVEQYGRVRRFLPHLLNTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISRSWKRLVINKEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPRARLLQGADWQANRIKVYRSLGHPTDPQEAIKSLGHQLDSRYRQVAARLGENEAVELDVSGPKPRLTISPLASLDEPDSLKRLSKMISDLLSPVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMAEACNIGLEPLIRSNVPALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQIWGGGEVASADGMRFVTPVRTINAGPNRKYFGNNRGITWYNFVSDQYSGFHGIVIPGTLRDSIFVLEGLLEQETGLNPTEIMTDTAGASDLVFGLFWLLGYQFSPRLADAGASVFWRMDHDADYGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQASVLVRSLLKSERPSGLTQAIIEVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYTDGQEDQLGALGLVTNAVVLWNTIYMQAALDHLRAQGETLNDEDIARLSPLCHGHINMLGHYSFTLAELVTKGHLRPLKEASEAENVA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EXT45_00495, hypothetical protein, phage(gi100060), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 2.41e-130
Locus 3: EXT45_00500 (Region 1)
Locus: EXT45_00500ORF Start: 8179
ORF Stop: 8736
Strand: Forward
Protein Sequence: MRIFGYARVSTSQQSLDIQIRALKDAGVKANRIFTDKASGSSTDREGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGDMGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTGATEIAHQLSIARSTVYKILEDERAS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EXT45_00500, hypothetical protein, phage(gi100036), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 3.74e-27
Locus 4: EXT45_00505 (Region 1)
Locus: EXT45_00505ORF Start: 8970
ORF Stop: 9524
Strand: Forward
Protein Sequence: MTNSNDSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLADVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDQLLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTTPDGPAVYMVQTRQAFERTRSVA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: EXT45_00505, bifunctional AAC/APH, phage(gi985761240), PHAGE_Staphy_SPbeta_like_NC_029119
Homolog/Ortholog E-Value: 4.59e-16
Locus 5: EXT45_00510 (Region 1)
Locus: EXT45_00510ORF Start: 9594
ORF Stop: 10382
Strand: Forward
Protein Sequence: MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPHSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQPVILEARQAYLGQEDRLASRADQLEEFVHYVKGEITKVVGK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: EXT45_00510, ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1
Homolog/Ortholog E-Value: N/A
Locus 6: EXT45_00515 (Region 1)
Locus: EXT45_00515ORF Start: 10442
ORF Stop: 11266
Strand: Forward
Protein Sequence: MKKILLLHMLVFVSATLPISSVASDEVETLKCTIIADAITGNTLYETGECARRVSPCSSFKLPLAIMGFDSGILQSPKSPTWELKPEYNPSPRDRTYKQVYPALWQSDSVVFSQQLTSRLGVDRFTEYVKKFEYGNQDVSGDSGKHNGLTQSWLMSSLTISPKEQIQFLLRFVAHKLPVSEAAYDMAYATIPQYQAAEGWAVHGKSGSGWLRDNNGKINESRPQGWFVGWAEKNGRQVVFARLEIGKEKSDIPGGSKAREDILVELPVLMGNK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: EXT45_00515, class D beta-lactamase
Homolog/Ortholog E-Value: N/A
Locus 7: EXT45_00520 (Region 1)
Locus: EXT45_00520ORF Start: 11466
ORF Stop: 11783
Strand: Forward
Protein Sequence: KEFDAQGVAVRFIDDGISTDGDMGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTGATEIAHQLSIARSTVYKILEDERAS
Homolog/Ortholog Species: Head protein
Homolog/Ortholog Protein: EXT45_00520, prohead core protein protease, phage(gi100061), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 1.13e-08
Locus 8: EXT45_00525 (Region 1)
Locus: EXT45_00525ORF Start: 11966
ORF Stop: 12826
Strand: Forward
Protein Sequence: MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: EXT45_00525, hypothetical protein, phage(gi100066), PHAGE_Salmon_SJ46_NC_031129
Homolog/Ortholog E-Value: 5.20e-57
Locus 9: EXT45_00530 (Region 1)
Locus: EXT45_00530ORF Start: 12976
ORF Stop: 13347
Strand: Backward
Protein Sequence: MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILN
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: EXT45_00530, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 9.16e-38
Locus 10: EXT45_00535 (Region 1)
Locus: EXT45_00535ORF Start: 13394
ORF Stop: 14698
Strand: Backward
Protein Sequence: MLNTRVHQSEVSMATDTPRIPEQGVATLPDEAWERARRRAEIISPLAQSETVGHEAADMAAQALGLSRRQVYVLIRRARQGSGLVTDLVPGQSGGGKGKGRLPEPVERVIHELLQKRFLTKQKRSLAAFHREVTQVCKAQKLRVPARNTVALRIASLDPRKVIRRREGQDAARDLQGVGGEPPAVTAPLEQVQIDHTVIDLIVVDDRDRQPIGRPYLTLAIDVFTRCVLGMVVTLEAPSAVSVGLCLVHVACDKRPWLEGLNVEMDWQMSGKPLLLYLDNAAEFKSEALRRGCEQHGIRLDYRPLGQPHYGGIVERIIGTAMQMIHDELPGTTFSNPDQRGDYDSENKAALTLRELERWLTLAVGTYHGSVHNGLLQPPAARWAEAVARVGVPAVVTRATSFLVDFLPILRRTLTRTGFVIDHIHYYADGHCCK
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: EXT45_00535, transposase, putative, phage(gi23501616), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 1.16e-33
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download