gi|00000000|ref|NZ_WXYS01000032.1|  Salmonella enterica subsp. enterica serovar Typhimurium strain 13401, gc%: 46.06%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1..394)                 PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage exodeoxyribonuclease VIII-like protein; SEETMRM13676_RS23300; phage(gi169257262)     3.34e-87            SalmonellaentericasubspentericaserovarTyphimuriumMSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKSGAKLKDYFKAVATNFPVVNELPPEGELSLTFCDYYQLAKDNMTWTQIPGVTLPSSEAAAAARQHIVDGVDTETGEVLEDHTENFGNEA
complement(521..871)               PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; SEETMRM13676_RS23305; phage(gi169257261)     2.96e-82            SalmonellaentericasubspentericaserovarTyphimuriumMKNSPLIWRGFLHPEFKTGEIMEIVKIEMNLKAVNKSIALFNCEKKVSGVIHSNSTGETTVILDGGYVLGKFDCPHCAVKAISLLTVKVSDGEQAGFGNYRSYKLDYSEKFYQTIH
complement(893..1051)              PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; SEETMRM13676_RS23310; phage(gi169257260)     2.52e-31            SalmonellaentericasubspentericaserovarTyphimuriumMLKQCGYCRKSIDEGKEVKNTLLYLNGSQLARKEKEYCSRQCAEYDQMAHES
complement(1508..2170)             hypothetical protein; SEETMRM13676_RS23315                                           N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMLSNDPYGNRAETDRFRQEATKYLSDESDINTLVSVFKHVRIYSMIIEMNTNLSHKSHVKGIIYDSLNSIVAILNKRERYLHLNLRSMIEHIARIALNKTYSGGDFDGTVRRRDFDYLKSNRRNENWNYLHNVYINACHYVHFSPQANINTSATFLQLLVNDCHSSQKNLIRNLHRLTSSVMETYITYFHYEVASTFYRSMADLKYLLGNSLYTKFKALN
complement(2170..2556)             hypothetical protein; SEETMRM13676_RS23320                                           N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMDKEQYNTLFRFAHGGVTKESAIGLFVTILLDKDLLKSNHDVKDFVESVFSIALLPYVVRSRTLICAKICRFLVSRERKEINNYGVMARSYFENIFSKEEDLQGHKKRNTALSNMDLWVSRMLKKGDK
complement(2549..3388)             PHAGE_Lactob_Lb_NC_047983: minor tail protein; SEETMRM13676_RS23325; phage(gi100055)     2.71e-13            SalmonellaentericasubspentericaserovarTyphimuriumMPASVISFINMKGGVGKTTLCVGIAEFMANYLGKRVLVIDVDPQFNATQSLLGHYGRVDEYLDQLQTNKITIRRIFEVPTSIMDTAQAIRPVDVITKVSDNLDVILGDINIIFDTSQESVRIFKIKRFIDDNNLRDQYDYIFLDSPPTISIFTDASLVASDFYVVPVKIDHYSILGATSLVSVVRNVRHNHNPNIRHLGFVYTNTDDELTLKTSKIKDNFEEKFSEFYFFEHKLSYVRDLMVGQQGNIPSCYTKSRSDISAISTEFALRVDQLMVSENG
complement(3447..3842)             PHAGE_Entero_mEp237_NC_019704: hypothetical protein; SEETMRM13676_RS23330; phage(gi435439303)     1.17e-52            SalmonellaentericasubspentericaserovarTyphimuriumMKEKTHQINHPQVQRLNEILELKKLTKSDMARICGVSAQSVNNWFVRGTIGKSSAIKLADALGVSLEWVLGQEVDERDGLKADERRLLELYRQLPDDEEKQNFLRVLSLRLKELDAMYEKYMKGRIRTRED
3942..4184                         PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical prophage protein; putative Cro analog; SEETMRM13676_RS23335; phage(gi169257257)     3.35e-13            SalmonellaentericasubspentericaserovarTyphimuriumMKAIDKAITRAGTATRLAELLEVSAMTISHWRNRYQGVVPADRVLPIYSATGVTPHELRPDLYPNPTDGLPSQEASAKQP
4144..4518                         PHAGE_Phage_Gifsy_1_NC_010392: probable regulatory protein; transcriptional activator; lambda CII analog; SEETMRM13676_RS23340; phage(gi169257256)     1.22e-86            SalmonellaentericasubspentericaserovarTyphimuriumMDYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
4610..5494                         PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage replication protein O; SEETMRM13676_RS23345; phage(gi169257255)     3.11e-49            SalmonellaentericasubspentericaserovarTyphimuriumMANTAEVINFPVPDVAHKEPRVADLDDGFTRIANEILEAVMHAGLSQHQLLVFMAVMRKTYGFNKKSDWVSNEQLSELTGILPHKCSSAKSALVKRGILTQTGRVIGINKTVSEWSSLPVKGTEKKPYLEKVNLPESGKKSLPESGKKSLPESGKKSLPESGNGYYPNQVNTKDTITKDSKDNSNKPPKPPRAVSFDASSVQLPDWLSSIIWSSWVEYRRDLKKPIKSQQTVTQAINLLDRCRLNGYTPEEIINRSIANGWQGLFEPDGQAKRSRDTDQESIHWNSPDAWRDFL
5491..6186                         PHAGE_Escher_HK639_NC_016158: replication protein 14; SEETMRM13676_RS23350; phage(gi356870655)     8.12e-70            SalmonellaentericasubspentericaserovarTyphimuriumMKPELYRAINNRDGAAMASIAGGNPEHGRVVNSDAERLVDALFMQLKQIFPAATQTNLRSDADERVAKQQWIAAFSENGIRTRKQLSAGMQKARSSQSPFWPSPGQFISWCREGSGALGVSVDDIMGEYWRWRKLVFRYPTSEQFPWRDKNPLYYHVCLELRRRGTEGQLSEKELIRAAGDILHDWEKRALAGKPIPPVCRALSAPSRDRGPTPAELLMAKYKQRKDAGLI
6200..6898                         PHAGE_Entero_UAB_Phi20_NC_031019: minor tail protein; SEETMRM13676_RS23355; phage(gi100055)     8.62e-60            SalmonellaentericasubspentericaserovarTyphimuriumMKERGITDGLTMNQLAERNAEHVTTIAALEARCAALVAENVGLKYQEPAGYHVIKECGKVGCSVATLEEAEKTRDFWNKKWTIRPYFYSAQPASERERIRREHAEWSDKTFGDVGPVGPLKHLSKEALETAAEPGDLSELADMQFLLWDAQRRAGITDKQITRAMVEKLEINKSRQWPEPKDGEPRLHIKKHPAPVVPEEITADGIIGMHECGFVEGWNACRAAMLSKWITK
7006..7638                         hypothetical protein; SEETMRM13676_RS23360                                           N/A                 SalmonellaentericasubspentericaserovarTyphimuriumMKYSRVEQSTGTSIDHNLGYFLDPQKYVPITEFVDESAALIKLNLIHENFLSIVIENLRREGTEKFVDVDKYFMPKIKTAVALGLPVSLAKCLTEMNNIRNKYAHKIEYIITDEDAERIDSLIMSVPVDDINHASLIDSTLITSITNLGASSIAFMNDIPKDFPDNRRRICKLVAMAFCISNLGAFWLLNELHRQGKLKMGSTKMAFKPS
7881..8114                         PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage putative DNA damage-inducible protein; DinI homolog; SEETMRM13676_RS23365; phage(gi169257250)     2.75e-50            SalmonellaentericasubspentericaserovarTyphimuriumMRIELVISRTKQLPEGAVPALEKELITRLQNQYENCNLTIRRGSQDGLSIVGAADGDKKRIQSILQETWESADDWFY
8231..8479                         PHAGE_Entero_mEp237_NC_019704: hypothetical protein; SEETMRM13676_RS23370; phage(gi435439314)     3.96e-52            SalmonellaentericasubspentericaserovarTyphimuriumMSNSALQKSEDSWYDIVRRSDGCVVFSFPSSGRHLIYRVNGMVSMRPLLDDEEVFTPNGFMHFIRRLGYRVTPPSDNMKSTA
8514..9116                         PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; SEETMRM13676_RS23375; phage(gi169257248)     2.25e-146           SalmonellaentericasubspentericaserovarTyphimuriumMAHELQLIKQSSGILIPATPETSDILQSKIKLGAVLVAEFRQVRNPAFHRRFFALLNLGFEYWEPTGGAISANERKLVNGYAKFLAAYGGNESALLDAAEQYLEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEVEFQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSWAG
9325..9936                         PHAGE_Phage_Gifsy_1_NC_010392: NinG; SEETMRM13676_RS23380; phage(gi169257246)        1.41e-147           SalmonellaentericasubspentericaserovarTyphimuriumMAKLPRRKCANKECRQWFHPIREGQIVCSYQCASAVGKEQTRKAREAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLGCISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVCNVYKSGNIEAYRTALVERYGEAAVLALENNNTPHRWTVEELKEIRLAALADLRALKKLEAA
9933..10073                        PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; SEETMRM13676_RS23385; phage(gi169257245)     7.90e-26            SalmonellaentericasubspentericaserovarTyphimuriumMKPELIEILRMRWQRLRIYRRPGSVLVDYRILRNFVRIYQFTGFTQ
10070..10747                       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; SEETMRM13676_RS23390; phage(gi169257244)     3.72e-165           SalmonellaentericasubspentericaserovarTyphimuriumMNTQYLQYVREQLMVATADLSGETKGQLLAWLENAQFDTKNYPRKKQRIWDEETESWITLNNPPIPGKQSLAKGSAIPLVKPVEYSTASWRRAVLSLDEHYKAWLLWNYSENTCWEHQVEITQWGWSAFAAQLDGKKMAGKTQERLRALIWLAAQDVKSELAGREVYQYKELAGLVGVSEKNWSETFTRHWLTMRAIFLRLDQASLLSVSESRSEQVAFNLYALN
11020..11583                       PHAGE_Phage_Gifsy_1_NC_010392: conserved hypothetical bacteriophage protein; SEETMRM13676_RS23395; phage(gi169257243)     2.72e-135           SalmonellaentericasubspentericaserovarTyphimuriumMTTQISVETLSPITHNQIPVITTELLAHLYGTKIKNISDNFLNNTTRFVVGKHFFKIEKNELREFKNRPETIGLVGKNARSLILWTERGAARHAKMLETDQAWEVFEKLEDCYFSQTLPSPTRQVQPAVDMLNIDLLIKIRDGNVKDIRQVGPDMFVGKVEQILSGLRDSGWIVIKRDLLAEKLATW
11925..12001                       tRNA                                                                                 N/A                 CCGCCATTAGCTCAACTGGAAAGAGCACGGAGCTTCTACCTCTGTGGTTCGGGGTTCGAATCCTCGATGGCGGACCA
12090..12278                       PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; SEETMRM13676_RS23405; phage(gi169257242)     5.18e-40            SalmonellaentericasubspentericaserovarTyphimuriumMKEGFYWIQHNGRVQVAYYTHGVTEDLETGQTIIGVWHLTQGDDICHNGEAEILAGPLEPPI
complement(12493..13179)           PHAGE_Phage_Gifsy_1_NC_010392: virulence protein GogA; SEETMRM13676_RS23410; phage(gi169257241)     9.93e-169           SalmonellaentericasubspentericaserovarTyphimuriumMPAGIKPIFINNMMSIYGLSHPHDSKVFPDLPEHQDNPSQLRLQHDGLATDDKARLEPMCLAEYLISGPGGMDPDIEIDDDTYDECREVLSRILEDAYTQSGTFRRLMNYAYDQELHDVEQRWLLGAGENFGTTVTDEDLESSEGRKVIALNLDDTDDDSIPECYESNDGPQPFDTTRSFIHEVVHALTHLQDKEDNNPRGPVVEYTNIILKEMGHTSPPRIAYESSN
