Submission Results
Sequence Name: Not Available
GenBank Accession Number: 1798961768 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 1798961768.PHASTER.zip
gi|00000000|ref|NZ_WXYT01000009.1| Salmonella enterica subsp. enterica serovar Typhimurium strain 178613, gc%: 53.07%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.4Kb | incomplete | 30 | 9 | 40154-48555 info_outline | PHAGE_Escher_500465_2_NC_049343(5) | 53.37% | Show info_outline |
Region DNA
>1 40154-48555 TTACTTCACCGCTTTTCCCTTCAATAACTTTCTCACCCATAACCGATTTGGATTTAACGC CGCCAGCGTACCGGCATCCAGTGGAATCGGCTCGTTACTCATCTGCGCCGCCAGAATTTC TGCGCATAATGGCGCTGAGCACAAACCGCGCGATCCCAGCGCGCCGAGCATAAATAAACC CGGATACACAGGCGCAGGCGCCGCCGACGTTTTATTATCGGCTAAATCGGCGTAATGCGT CAGCGTGGCATGGTAATCCGGGACATTGCCCACCATCGGCAGATGGTCGCGGGTGGCGCA ACGCACGCCGCAACGGGCGCTGTTGCCGCTGACGTCAACCTCTGTGGCCCATTTCGCATC CGGAAAACAGTCAAGCAGACGCTGTCGGTTCTGACGCTGATCTTCTTCGCGCCAGACGGT GCTTTCGTCACCCCGGTGATAGCTGGCGCCAATACAGTGCTGCTGATTATGCGGATTTTG CGGCGTCAGATAGCCGTCGTAGCATAACACCTGACGCAACGCCGAGAGAGCGGGGGTGGT GGGAATATGACTGACCTGCCCCCCGACGGCATACACCGGCAGCGGCTGGGTCTGATCAAA ACGGTTAATCTGATGGCCGTTCGCCAGAACGACGGTCTCATGGCTGGCGGTTTCACCTGA CGTAAAGCGCAGTTGCCAGCGCGACTCCTGCGCAACGAGCGACGTGAGCGTATGGCGAAA GCGCGTTTGTAAACCCTGTTCGGTCGCCAGTGCGATGACTGCGCGAGTTAATTGTTCCGG GCACAGCCAGCCGCCTGCCGGATAGGTAATTCCTCCGCAGCGTGTCGTCACGCCAACCGC CTGTTCCGCCTCTTCGGCATTGAGCGCCGAGGCCAGTCCGGCGGGCAGCGCCAGGGACAG CATCTGGGCAATTTTCTGCTGGCTTTTCTCATCCCATCCGAGCTGCGTTACGCCGCACCA GTCATGATCAAAAGAGACGGGCAGGGCATCATACAGGCGACGGGCAAAGGTGAATGCGGT CGGGAAAAAGCGATTAATGGCGGCGTCATGTTTGCTAAGGAGCGGATAAAGCGCGCCCTG TCGATTACCGGAAGCGCCCTGGGCGGGCTGATCATCTGCGCAATAGAGCGTCACCTGCCA GCCGCGACGCAGTAACGCCAGTGATAACAGCGCGCTGGCAATGCCGCCGCCAATGATCGC CGTTTCACGTTTTTCGCTTCCACTGCGGTAAAACCAGGGCGCGGAAAGGGTCGGCATGAG GTGTTGTTCCATCACTCCACAAAGCATCTCGCGTTTACGCCCGAAGCCTTTGCGTTTTTG CATGGTAAAACCGGCTTCCTGCAATCCCCGACGGACGAAACCCGCCGAGGTAAACGTCGC CAGCGTTGCGCCGGGCCGCGCCAGCCGCGCCATCGCGTTAAACAGGTTTGGCGTCCACAT ATCCGGATTTTTCGCCGGGGCAAAACCGTCGAGGAACCAGGCGTCGACTGTTTGATTTAG CGTGGCGTCCAGTTGGTCGGTCAATTCATTAATATCGCCAAACCACAAATCCAGTGTCAC CCGGCCCCGATCCAGCAATAGGCGGTGGCACCCCGGGAGCGGCAGCGGCCATTGCGCCTG CAGCTGCTCTGCCCAGGGCGCGAGCTCCGGCCAGTGTTGGTGCGCCAGCGCCAGATCGTC GCGCGTTAACGGGAATTTCTCAAAACTGATGAAATGTAACCTTTGCAGCGTCGCCTGTGG GTGCGCAGAACGAAAGCTGTCAAACGCCTGCCACAGCGTCAGGAAGTTGAGTCCGGTGCC AAAACCGCTTTCCGCGACTATAAATAATGGATGTGAATGTACGGGAAATCGCTCCGCAAG ACGATTGCCGCCAAGAAAAACGTAGCGTGTCTCTTCGAGTCCATTGTCATTAGAAAAATA GACATCATCAAAATCTCGGGAAACAGGTGTACCCTCAGCGTTAAATTCGAGTGTGGCGGG TTGTATGGCGTATTGTTTCACGTAAGTTACTCGTCTGACGGGCGGTATCGCGATCTTAAC GATGTGTGCCTGATGGCGCAAATTTCCGTACTAAATGGCTGATCGGACTTGTTCGGCGTA CAAGTGTACGCTATTGTGCCAATCGAAACTTAAAAATAGTGCGAATTACAGAGGTATTGA ATGAAACGTGCAGTGATTACTGGCCTGGGCATCGTTTCCAGCATCGGTAATAACCAGCAG GAAGTCCTGGCATCTCTGCGTGAAGGACGTTCAGGGATCACTTTCTCTCAGGAGCTGAAG GACGCCGGCATGCGTAGCCAGGTATGGGGCAACGTAAAACTGGATACCACTGGCCTCATT GACCGCAAAGTCGTGCGCTTTATGAGCGACGCCTCCATCTATGCTTATCTGTCTATGGAG CAGGCAGTGGCCGACGCCGGTCTGGCGCCGGAAGTCTATCAGAATAACCCGCGTGTCGGC CTGATTGCAGGTTCCGGCGGCGGCTCCCCGAAATTCCAGGTCTTTGGCGCAGACGCCATG CGTAGCCCGCGTGGTTTGAAAGCCGTGGGCCCGTATGTGGTGACGAAAGCAATGGCATCC GGCGTTTCCGCCTGCCTCGCTACGCCGTTTAAAATTTATGGCGTGAACTACTCCATTAGC TCCGCTTGCGCGACCTCCGCACACTGTATCGGCAATGCGGTTGAACAGATCCAACTGGGC AAACAGGACATCGTTTTTGCTGGCGGCGGCGAAGAGCTGTGCTGGGAAATGGCCTGTGAG TTCGACGCGATGGGCGCACTGTCCACCAAATATAACGATACGCCTGAAAAAGCGTCCCGT ACCTATGATGCGCACCGTGATGGGTTTGTCATCGCGGGCGGTGGCGGTATGGTTGTTGTC GAAGAGCTGGAGCACGCTCTGGCGCGCGGCGCGCATATCTATGCGGAAATCGTCGGCTAT GGCGCAACATCCGATGGCGCAGACATGGTTGCTCCGTCTGGTGAAGGCGCAGTACGTTGC ATGCAGATGGCGATGCACGGCGTAGACACGCCGATCGACTACCTGAACTCTCACGGTACC TCTACTCCGGTAGGCGACGTGAAAGAACTCGGTGCAATCCGTGAAGTGTTTGGCGATAAC AGCCCGGCTATCTCCGCGACCAAAGCGATGACCGGCCACTCGCTGGGTGCGGCTGGCGTG CAGGAAGCCATCTACTCTCTGCTGATGCTGGAGCACGGTTTTATCGCGCCGAGCATCAAC ATCGAAGAGCTGGATGAGCAGGCTGCGGGTCTGAACATCGTGACCGAAACGACCGAGCGT GAACTGACTACCGTAATGTCTAACAGCTTCGGTTTTGGCGGCACCAACGCCACGCTGGTG ATGCGTAAGTTGTAAGCCTGACTATTACGTTGTAGTATCAACAATGAAACAGGTCGCTAA TGCGACCTGTTTTTTCATTCAGGGAACAACAAATTATATGGATATTATATAAATGCCAAC TAATACATTAGATAAAATTAGGCATAGTTTGAGTTGTGTGGCTGTTTTATTTGGTTTGTT CGGCATTTTTGTTTTTGCCTCATTTTCGCCTTCCTATGCCTGGCTTTATTTGGGAGGTCT GGCTGCGCCTTTTATATATAGTATTGTTTTTGTCTATGCGATTGCCGCCTGGAGTATTTA TTCAAAGTATTACCCGTTTTTATCATTGGGTCGCTTATCATTCGTGGAGTGTTTTGTTCC GGCGCTGGCCCTGGTGTGCCTTACCGTTCTCTACAATGCTTTTAGTGGCCCGGAACCCTG GATGGCCGAGTTATCAAGGCAATTTTTTCTTCATAAATTTCTTAACACGCTGGCGATGTG CTTTCTGGCTCCTGTGGCGGAGGAAATTATATTCAGAGGGTTTTTATTAAACAGCAGTAT CGGTTGGGGTCGGTACTCAAGAGCTTCCGGTATTATTATTACTTCACTCGCTTTTGCATT TATGCATACACAATATCTCTTTGCGGTGACTTTTGTTTATCTGTTTGTTTTTTCATCGAT ATTATGCGTTGTTCGAATGAGAAGCCGTGGGCTAATGATACCGATAATACTTCATATTTT AAATAATGCCTGGGTTGTTTTCGGCTTACTGTTTTCAGCGACGGAATAAGAGCCTGATGC AAGAGGCGCTTTAACCTCTCCGGTACGAACAAGAGACCGATGGCGGTTCCCTTTTTTAAT GCTTCTTATATTCCGGCGCGACTTTCGCTGACCAGGCCTCAGCCTGGGTGATGGCGCCTG CGTCATAAATCGGCTGTTCATAACCCCTGTCAGCATCCCGAACGCGGTAAATTTTCCAGC GTCCCTCTTCCCAACGGGTATAAACTTCCAGGTGGATGGGCGTTGACTCTGTAGCCAACA GAACATCCACTTTTTCTCCGCCGAGGAAAGGGTGTGCCTTCCCAACCCGTAACTGTGGAA TCCACTCTGGCGCATAGTCCTGCGCATACATAAAATAATCTGCCCCCACAATCTCCTGTT CATAAAGGGACTGTATTAGCGCCAGGCGATGAATAACCTCTTTAGCAACGTAACGTTGCA TTAAGGCGGTGGTGTCGTCAGGGGTATTCACATCGTTCGTGAACGTCGTCATCCATGAGG TATAGAACTGCTTCACGGCCTGCGTACTGTCGTGATGAGGCGCAGAGCAACTACAAAGCA ACAGGATAAGCGCGACAAGGGAGAACGTTTTCATTAATTCTTCCTGTAGATGGTATATGA GGGCCTGGCTGCCCGGTAGCCCGGGCCGGCCCACATATCGCGTTGTTTAAAATCTGAATA CCACTCTGTGCCATCGTATATCGCCATGTGACCGCTCGGGTTTCCGCCAGCGTAAGGTTG AATAATGATGACGTCACCCTCGCGCGGCATTTCATAGGTACCAATAGCGGTGAATCCGGC GCTTCTTAACATTGGGCCATAATCTTTCGCATGATATGTATGCCCCAGCGTGATACCGCC CGCCTGAATTGCCTTTCGGGTAAATTCCGCACACCGGCCTTGAGAATGAGAACCTGCATG CGTTTTGGCATAATTAACCGCCATTCTTTTATCCCAACTCATAATGATTCCTGTTAATAA AATACGTAATAGCAATGACGTAATGCTTTAACAGTATTTGATTCGGGAAGCATGACAGAT AGTGCTATTACTATTTTCAATATAATAAGTTTAAATATTTATTAATTGTTGAGATTGATA GGTTAAAGCCAATTTATTCAGCATTAACTATTATTCTGCGATATCGGCATCATTTTTTAT TTGCATATCATCATAGCGCGACGGCCAGATCTCTTTCGGCGTGATGCCCAGCGCGTCCGC AATAATCCGTTCAGCTCTCGGCCAGGAACGGGTAAAGACATTGCGCAGTGAATCAGGTGA TAAACCGGCCTGACGAGAAAGATCTCTGAGCGTAATACCTCTTTTTTCAAGTGCACTTTT AATATCTGCACGATGCCAGTCTTGGCTTTTTGGTTCCATTCTGTAATCCTAAGAAGATGT GTTATCGGCACCGATATTTTTAAGGTAAAAATTAGCGCGAGAAAAAGAAAGTTACTTTCT TTTTCACTCTGAGAATAGTGCCAGAAAGAAAGCAAAATTTCGCGAAAAAGAAGAAATATT TTTATTTCATCAGGGGAAAGGAAAGAAACCGATGGCAAAGGAATGGTTCACGGTTAAGGA ATGTCTTGGCTTACCGGGGTTTCCGGGAAGCGAGCCTGCGGTTCGCGAACGTTTGTATAA GTACAGCGAAGGGAAAGAGGGTGTCAGGCGTAAGCGTGTTAAATCAAAGGCCGAGGAGTT TCATATATCTGTTTTCCCTCTTTATGTTCATCGTTATCTGGACGACAGCGGAGAGGAACC GACGCCGGAACCCATTTCCTTACAGGAAGCGGAGCCTGAAGATATCTGGGAGATGATGTT CAGGTTACTGACGCCAGAACAGCGCAAGCAGGTGACCGGACGGTTTAAGGTGAGAGGGAT GAAAGCGGTCTTTCCCTTTCTGTTTGATGACACGCCGCCACGTTGATACCCTGGCTGCAA TTTCAAGGTTGACAAGTTTCGCGTCTCACAGGCAGACTTCACTTTCTACATTATCCTTCC GATAATGCGTAAGCGTTTAACGTTATCCAACGCACCTTAATCCTGACGTTCAGGTAGAGG GGGGCGTGGCCTTTCCCCGCCTTACTCTGCATTCTGGAGTAATGCATGACAGCAGTTAGC CAAAAAACAACGACCCCGTCTGCGAATTTTTCGCTGTTCCGCATCGCCTTTGCGGTTTTC CTGACCTATATGACGGTCGGCCTGCCGTTACCCGTCATCCCGCTTTTTGTTCATCACGAA CTGGGCTATAGCAATACGATGGTTGGGATCGCCGTGGGCATTCAGTTTTTTGCGACGGTA CTGACGCGCGGCTATGCCGGACGGCTGGCGGATCAATATGGCGCTAAACGATCGGCGTTA CAGGGGATGCTTGCCTGCGGGCTGGCGGGCGCCGCCTGGCTCCTGGCCGCGCTGTTGCCG GTTTCCGCGCCAGTAAAATTCGCGCTGCTTATTGTCGGGCGTTTGATCCTCGGATTTGGC GAAAGCCAGCTGCTGACCGGAACCCTGACCTGGGGACTGGGGCTGGTTGGCCCAACGCGT TCCGGTAAGGTGATGTCGTGGAACGGGATGGCGATTTACGGCGCGCTGGCGGCCGGTGCG CCGTTGGGCTTGCTGATCCATAGCCACTTTGGCTTCGCGGCGCTGGCGGGGACGACGATG GTTTTACCGCTGCTGGCCTGGGCATTCAACGGCACCGTGCGTAAAGTGCCTGCGTATACG GGGGAGCGACCTTCACTGTGGAGCGTGGTCGGGCTTATCTGGAAACCGGGCCTGGGCCTG GCATTGCAGGGCGTGGGCTTTGCCGTCATCGGTACGTTTATTTCACTTTATTTTGTCAGC AATGGCTGGACGATGGCGGGATTCACCCTGACCGCGTTTGGCGGTGCGTTTGTACTGATG CGCATATTGTTCGGTTGGATGCCGGACCGCTTTGGCGGCGTGAAGGTCGCCGTTGTCTCA TTGCTGGTTGAGACGGCAGGGTTGCTGCTCTTGTGGCTGGCGCCGACGGCCTGGATAGCG CTGGTAGGCGCGGCGCTCACCGGGGCAGGGTGTTCACTGATTTTCCCGGCGCTGGGCGTG GAGGTTGTGAAACGCGTACCTGCACAGGTACGCGGTACGGCGCTCGGCGGCTACGCCGCG TTTCAGGATATCTCCTACGGCGTTACCGGCCCGCTGGCGGGCATGCTGGCCACGTCATAC GGCTATCCTTCCGTATTCCTCGCGGGAGCGATCTCCGCGGTGGTTGGCATCCTGGTGACG ATATTATCGTTCCGGCGCGGTTAAGAAACCAGCCAGAAAAGCGCCAGTACAATTATTAGC GCGATAAACAACAGGCCTGGTCGCGCAGACAGATTTTTCACGGTTTCAATCATCGGCGCA AACGGGCGGTAGATGGGTTGAATAGAGAGCGGTTCGAGCTCATCCGCCTCCCGCTCTACG CGACGCAGGAAAATATGGTTAAGTAAATCCTGCACCTGGGCGGTGGTCAGCACCGTTTGC GGCTGAATTTGATAAGTGTGTTGGGCATACTCTTTGATCGCTGTGAGTTCGTCCGGTTCC AGCGGTTGTTTTAACGCAGCCTGCAGCGTATGTAGCGTAGGCGCGTGTTGTAGTGACAGC GTCTGCCGCGCCTGTAGCCATGTCGCCAGATGGGTAAACTGTTTTGCCGGAATGAGCTCG CCGCTTTTCACGCCGGAGAGTTCCAGCATTGATTGCCAGATAAGTTTGTTTGACTCGCCG GTCGCGGCCGCCAGCTTCGTCACCAACTGATTCAACGTATTATGTTCAGCAGGCAATAAT GGCCGATCCGTTGCCGGACGTTGCTGCGGCTGCGGAATGGAAAGCTGCCCCTGTTGCAGG AGCGTCAGCACGTTTTTGAGTTGATCGGGCGTAAGCTGGCTAAGCGCGGTTTGACCGTAT TGCTGACGGATAAAATCGCTGACGGCCTGACGATTATTTCCGACGCCAAGCAGCTCTGTT AGCTGTGAAAGCACCTGACGATTGGCGTGATTTTGCTGCGCTACGCCCAGACGCTGGGTA AGATTCTGTTCAGCGGCGGGGAAGTGGCGCGACAGTAGCGGCGCGTCATTTTTTATCCCC AGATCGTGTTTCATTCCGGCCCATACTTCCGCGCTTTGCTGCTGGGTCAGTGAAATCAGG CGCGTGATCAGCCTTTCCAGTACCGTACGCTGTTGCATGGAAAGCGGCTGCTCGCTCGCA GCGGAAAGAGGATTACGCCCTTCGCCTGGAGGCTGTGCAGGGGCGCCGGAGATGGGATGC AT
Region Details
| Region | 1 |
| Region Length | 8.4Kb |
| Completeness(score) | incomplete(30) |
| Specific Keyword | protease,plate |
| Region Position | 40154-48555 |
| # tRNA | 0 |
| # Total Proteins | 9 |
| # Phage Hit Proteins | 7 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 77.7% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 4 |
| Most Common Phage Name(hit genes count) | PHAGE_Escher_500465_2_NC_049343(5) PHAGE_Escher_D108_NC_013594(2) PHAGE_Entero_SfMu_NC_027382(2) PHAGE_Acinet_vB_AbaM_PhT2_NC_049494(1) PHAGE_Acinet_Acj9_NC_014663(1) PHAGE_Ralsto_RS138_NC_029107(1) PHAGE_Pseudo_JBD93_NC_030918(1) PHAGE_Entero_Mu_NC_000929(1) PHAGE_Acinet_AbTZA1_NC_049445(1) PHAGE_Haemop_SuMu_NC_019455(1) PHAGE_Campyl_CP220_NC_027997(1) PHAGE_Acinet_Acj61_NC_014661(1) |
| First Most Common Phage # | 4 |
| First Most Common Phage % | 55.55% |
| GC % | 53.37% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NZ_WXYT01000009.1| Salmonella enterica subsp. enterica serovar Typhimurium strain 178613, gc%: 53.07%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 9 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(40154..42154) | PHAGE_Escher_500465_2_NC_049343: hypothetical protein; GUK00_RS12495; phage(gi100042) | 0.0 | Showinfo_outline |
| 2 | 42314..43528 | PHAGE_Escher_500465_2_NC_049343: DNA adenine methyltransferase; GUK00_RS12500; phage(gi100041) | 0.0 | Showinfo_outline |
| 3 | 43626..44282 | CPBP family intramembrane metalloprotease; GUK00_RS12505 | 0.0 | Showinfo_outline |
| 4 | complement(44349..44867) | YbjP/YqhG family protein; GUK00_RS12510 | 0.0 | Showinfo_outline |
| 5 | complement(44867..45235) | PHAGE_Acinet_Acj61_NC_014661: gp27 baseplate hub subunit; GUK00_RS12515; phage(gi311992945) | 6.37e-09 | Showinfo_outline |
| 6 | complement(45404..45652) | PHAGE_Ralsto_RS138_NC_029107: transcriptional regulator; GUK00_RS12520; phage(gi985760910) | 1.45e-24 | Showinfo_outline |
| 7 | 45825..46199 | PHAGE_Pseudo_JBD93_NC_030918: hypothetical protein; GUK00_RS12525; phage(gi100005) | 2.12e-05 | Showinfo_outline |
| 8 | 46379..47557 | PHAGE_Escher_500465_2_NC_049343: hypothetical protein; GUK00_RS12530; phage(gi100040) | 0.0 | Showinfo_outline |
| 9 | complement(47554..48555) | PHAGE_Escher_500465_2_NC_049343: hypothetical protein; GUK00_RS12535; phage(gi100039) | 9.21e-129 | Showinfo_outline |
Sequence
>complement(40154..42154)
SalmonellaentericasubspentericaserovarTyphimuriumMKQYAIQPATLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLGGNRLAERFPVHSHPLFIVAESGFGTGLNFLTLWQAFDSFRSAHPQATLQRLHFISFEKFPLTRDDLALAHQHWPELAPWAEQLQAQWPLPLPGCHRLLLDRGRVTLDLWFGDINELTDQLDATLNQTVDAWFLDGFAPAKNPDMWTPNLFNAMARLARPGATLATFTSAGFVRRGLQEAGFTMQKRKGFGRKREMLCGVMEQHLMPTLSAPWFYRSGSEKRETAIIGGGIASALLSLALLRRGWQVTLYCADDQPAQGASGNRQGALYPLLSKHDAAINRFFPTAFTFARRLYDALPVSFDHDWCGVTQLGWDEKSQQKIAQMLSLALPAGLASALNAEEAEQAVGVTTRCGGITYPAGGWLCPEQLTRAVIALATEQGLQTRFRHTLTSLVAQESRWQLRFTSGETASHETVVLANGHQINRFDQTQPLPVYAVGGQVSHIPTTPALSALRQVLCYDGYLTPQNPHNQQHCIGASYHRGDESTVWREEDQRQNRQRLLDCFPDAKWATEVDVSGNSARCGVRCATRDHLPMVGNVPDYHATLTHYADLADNKTSAAPAPVYPGLFMLGALGSRGLCSAPLCAEILAAQMSNEPIPLDAGTLAALNPNRLWVRKLLKGKAVK
Sequence
>42314..43528
SalmonellaentericasubspentericaserovarTyphimuriumMKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDAGMRSQVWGNVKLDTTGLIDRKVVRFMSDASIYAYLSMEQAVADAGLAPEVYQNNPRVGLIAGSGGGSPKFQVFGADAMRSPRGLKAVGPYVVTKAMASGVSACLATPFKIYGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMQMAMHGVDTPIDYLNSHGTSTPVGDVKELGAIREVFGDNSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTERELTTVMSNSFGFGGTNATLVMRKL
Sequence
>43626..44282
SalmonellaentericasubspentericaserovarTyphimuriumMPTNTLDKIRHSLSCVAVLFGLFGIFVFASFSPSYAWLYLGGLAAPFIYSIVFVYAIAAWSIYSKYYPFLSLGRLSFVECFVPALALVCLTVLYNAFSGPEPWMAELSRQFFLHKFLNTLAMCFLAPVAEEIIFRGFLLNSSIGWGRYSRASGIIITSLAFAFMHTQYLFAVTFVYLFVFSSILCVVRMRSRGLMIPIILHILNNAWVVFGLLFSATE
Sequence
>complement(44349..44867)
SalmonellaentericasubspentericaserovarTyphimuriumMKTFSLVALILLLCSCSAPHHDSTQAVKQFYTSWMTTFTNDVNTPDDTTALMQRYVAKEVIHRLALIQSLYEQEIVGADYFMYAQDYAPEWIPQLRVGKAHPFLGGEKVDVLLATESTPIHLEVYTRWEEGRWKIYRVRDADRGYEQPIYDAGAITQAEAWSAKVAPEYKKH
Sequence
>complement(44867..45235)
SalmonellaentericasubspentericaserovarTyphimuriumMSWDKRMAVNYAKTHAGSHSQGRCAEFTRKAIQAGGITLGHTYHAKDYGPMLRSAGFTAIGTYEMPREGDVIIIQPYAGGNPSGHMAIYDGTEWYSDFKQRDMWAGPGYRAARPSYTIYRKN
Sequence
>complement(45404..45652)
SalmonellaentericasubspentericaserovarTyphimuriumMEPKSQDWHRADIKSALEKRGITLRDLSRQAGLSPDSLRNVFTRSWPRAERIIADALGITPKEIWPSRYDDMQIKNDADIAE
Sequence
>45825..46199
SalmonellaentericasubspentericaserovarTyphimuriumMAKEWFTVKECLGLPGFPGSEPAVRERLYKYSEGKEGVRRKRVKSKAEEFHISVFPLYVHRYLDDSGEEPTPEPISLQEAEPEDIWEMMFRLLTPEQRKQVTGRFKVRGMKAVFPFLFDDTPPR
Sequence
>46379..47557
SalmonellaentericasubspentericaserovarTyphimuriumMTAVSQKTTTPSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHELGYSNTMVGIAVGIQFFATVLTRGYAGRLADQYGAKRSALQGMLACGLAGAAWLLAALLPVSAPVKFALLIVGRLILGFGESQLLTGTLTWGLGLVGPTRSGKVMSWNGMAIYGALAAGAPLGLLIHSHFGFAALAGTTMVLPLLAWAFNGTVRKVPAYTGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFISLYFVSNGWTMAGFTLTAFGGAFVLMRILFGWMPDRFGGVKVAVVSLLVETAGLLLLWLAPTAWIALVGAALTGAGCSLIFPALGVEVVKRVPAQVRGTALGGYAAFQDISYGVTGPLAGMLATSYGYPSVFLAGAISAVVGILVTILSFRRG
Sequence
>complement(47554..48555)
SalmonellaentericasubspentericaserovarTyphimuriumMHPISGAPAQPPGEGRNPLSAASEQPLSMQQRTVLERLITRLISLTQQQSAEVWAGMKHDLGIKNDAPLLSRHFPAAEQNLTQRLGVAQQNHANRQVLSQLTELLGVGNNRQAVSDFIRQQYGQTALSQLTPDQLKNVLTLLQQGQLSIPQPQQRPATDRPLLPAEHNTLNQLVTKLAAATGESNKLIWQSMLELSGVKSGELIPAKQFTHLATWLQARQTLSLQHAPTLHTLQAALKQPLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNHIFLRRVEREADELEPLSIQPIYRPFAPMIETVKNLSARPGLLFIALIIVLALFWLVS
Salmonella enterica subsp
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 178613 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: GUK00_RS12495 (Region 1)
Locus: GUK00_RS12495ORF Start: 40154
ORF Stop: 42154
Strand: Backward
Protein Sequence: MKQYAIQPATLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLGGNRLAERFPVHSHPLFIVAESGFGTGLNFLTLWQAFDSFRSAHPQATLQRLHFISFEKFPLTRDDLALAHQHWPELAPWAEQLQAQWPLPLPGCHRLLLDRGRVTLDLWFGDINELTDQLDATLNQTVDAWFLDGFAPAKNPDMWTPNLFNAMARLARPGATLATFTSAGFVRRGLQEAGFTMQKRKGFGRKREMLCGVMEQHLMPTLSAPWFYRSGSEKRETAIIGGGIASALLSLALLRRGWQVTLYCADDQPAQGASGNRQGALYPLLSKHDAAINRFFPTAFTFARRLYDALPVSFDHDWCGVTQLGWDEKSQQKIAQMLSLALPAGLASALNAEEAEQAVGVTTRCGGITYPAGGWLCPEQLTRAVIALATEQGLQTRFRHTLTSLVAQESRWQLRFTSGETASHETVVLANGHQINRFDQTQPLPVYAVGGQVSHIPTTPALSALRQVLCYDGYLTPQNPHNQQHCIGASYHRGDESTVWREEDQRQNRQRLLDCFPDAKWATEVDVSGNSARCGVRCATRDHLPMVGNVPDYHATLTHYADLADNKTSAAPAPVYPGLFMLGALGSRGLCSAPLCAEILAAQMSNEPIPLDAGTLAALNPNRLWVRKLLKGKAVK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK00_RS12495, hypothetical protein, phage(gi100042), PHAGE_Escher_500465_2_NC_049343
Homolog/Ortholog E-Value: 0.0
Locus 2: GUK00_RS12500 (Region 1)
Locus: GUK00_RS12500ORF Start: 42314
ORF Stop: 43528
Strand: Forward
Protein Sequence: MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDAGMRSQVWGNVKLDTTGLIDRKVVRFMSDASIYAYLSMEQAVADAGLAPEVYQNNPRVGLIAGSGGGSPKFQVFGADAMRSPRGLKAVGPYVVTKAMASGVSACLATPFKIYGVNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGAVRCMQMAMHGVDTPIDYLNSHGTSTPVGDVKELGAIREVFGDNSPAISATKAMTGHSLGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTERELTTVMSNSFGFGGTNATLVMRKL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK00_RS12500, DNA adenine methyltransferase, phage(gi100041), PHAGE_Escher_500465_2_NC_049343
Homolog/Ortholog E-Value: 0.0
Locus 3: GUK00_RS12505 (Region 1)
Locus: GUK00_RS12505ORF Start: 43626
ORF Stop: 44282
Strand: Forward
Protein Sequence: MPTNTLDKIRHSLSCVAVLFGLFGIFVFASFSPSYAWLYLGGLAAPFIYSIVFVYAIAAWSIYSKYYPFLSLGRLSFVECFVPALALVCLTVLYNAFSGPEPWMAELSRQFFLHKFLNTLAMCFLAPVAEEIIFRGFLLNSSIGWGRYSRASGIIITSLAFAFMHTQYLFAVTFVYLFVFSSILCVVRMRSRGLMIPIILHILNNAWVVFGLLFSATE
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GUK00_RS12505, CPBP family intramembrane metalloprotease
Homolog/Ortholog E-Value: N/A
Locus 4: GUK00_RS12510 (Region 1)
Locus: GUK00_RS12510ORF Start: 44349
ORF Stop: 44867
Strand: Backward
Protein Sequence: MKTFSLVALILLLCSCSAPHHDSTQAVKQFYTSWMTTFTNDVNTPDDTTALMQRYVAKEVIHRLALIQSLYEQEIVGADYFMYAQDYAPEWIPQLRVGKAHPFLGGEKVDVLLATESTPIHLEVYTRWEEGRWKIYRVRDADRGYEQPIYDAGAITQAEAWSAKVAPEYKKH
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: GUK00_RS12510, YbjP/YqhG family protein
Homolog/Ortholog E-Value: N/A
Locus 5: GUK00_RS12515 (Region 1)
Locus: GUK00_RS12515ORF Start: 44867
ORF Stop: 45235
Strand: Backward
Protein Sequence: MSWDKRMAVNYAKTHAGSHSQGRCAEFTRKAIQAGGITLGHTYHAKDYGPMLRSAGFTAIGTYEMPREGDVIIIQPYAGGNPSGHMAIYDGTEWYSDFKQRDMWAGPGYRAARPSYTIYRKN
Homolog/Ortholog Species: Plate protein
Homolog/Ortholog Protein: GUK00_RS12515, gp27 baseplate hub subunit, phage(gi311992945), PHAGE_Acinet_Acj61_NC_014661
Homolog/Ortholog E-Value: 6.37e-09
Locus 6: GUK00_RS12520 (Region 1)
Locus: GUK00_RS12520ORF Start: 45404
ORF Stop: 45652
Strand: Backward
Protein Sequence: MEPKSQDWHRADIKSALEKRGITLRDLSRQAGLSPDSLRNVFTRSWPRAERIIADALGITPKEIWPSRYDDMQIKNDADIAE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: GUK00_RS12520, transcriptional regulator, phage(gi985760910), PHAGE_Ralsto_RS138_NC_029107
Homolog/Ortholog E-Value: 1.45e-24
Locus 7: GUK00_RS12525 (Region 1)
Locus: GUK00_RS12525ORF Start: 45825
ORF Stop: 46199
Strand: Forward
Protein Sequence: MAKEWFTVKECLGLPGFPGSEPAVRERLYKYSEGKEGVRRKRVKSKAEEFHISVFPLYVHRYLDDSGEEPTPEPISLQEAEPEDIWEMMFRLLTPEQRKQVTGRFKVRGMKAVFPFLFDDTPPR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK00_RS12525, hypothetical protein, phage(gi100005), PHAGE_Pseudo_JBD93_NC_030918
Homolog/Ortholog E-Value: 2.12e-05
Locus 8: GUK00_RS12530 (Region 1)
Locus: GUK00_RS12530ORF Start: 46379
ORF Stop: 47557
Strand: Forward
Protein Sequence: MTAVSQKTTTPSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHELGYSNTMVGIAVGIQFFATVLTRGYAGRLADQYGAKRSALQGMLACGLAGAAWLLAALLPVSAPVKFALLIVGRLILGFGESQLLTGTLTWGLGLVGPTRSGKVMSWNGMAIYGALAAGAPLGLLIHSHFGFAALAGTTMVLPLLAWAFNGTVRKVPAYTGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFISLYFVSNGWTMAGFTLTAFGGAFVLMRILFGWMPDRFGGVKVAVVSLLVETAGLLLLWLAPTAWIALVGAALTGAGCSLIFPALGVEVVKRVPAQVRGTALGGYAAFQDISYGVTGPLAGMLATSYGYPSVFLAGAISAVVGILVTILSFRRG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK00_RS12530, hypothetical protein, phage(gi100040), PHAGE_Escher_500465_2_NC_049343
Homolog/Ortholog E-Value: 0.0
Locus 9: GUK00_RS12535 (Region 1)
Locus: GUK00_RS12535ORF Start: 47554
ORF Stop: 48555
Strand: Backward
Protein Sequence: MHPISGAPAQPPGEGRNPLSAASEQPLSMQQRTVLERLITRLISLTQQQSAEVWAGMKHDLGIKNDAPLLSRHFPAAEQNLTQRLGVAQQNHANRQVLSQLTELLGVGNNRQAVSDFIRQQYGQTALSQLTPDQLKNVLTLLQQGQLSIPQPQQRPATDRPLLPAEHNTLNQLVTKLAAATGESNKLIWQSMLELSGVKSGELIPAKQFTHLATWLQARQTLSLQHAPTLHTLQAALKQPLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNHIFLRRVEREADELEPLSIQPIYRPFAPMIETVKNLSARPGLLFIALIIVLALFWLVS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: GUK00_RS12535, hypothetical protein, phage(gi100039), PHAGE_Escher_500465_2_NC_049343
Homolog/Ortholog E-Value: 9.21e-129
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download