gi|00000000|ref|NZ_WXYT01000035.1|  Salmonella enterica subsp. enterica serovar Typhimurium strain 20330, gc%: 53.60%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1..2697)                PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail fiber (host specificity) protein; Lambda gp J homolog; GUK00_RS22695; phage(gi169257317)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMSKGGGKGHTPREAKDDLKSTQQLSVIDALSEGPIVGPVNGLQSVLINNTPVVDADGNSNIHGVTVVYQVGETPQAPLEGFEASGAETVLGVEVKHDNPVTRTVVSENVDRLRFTFGVQMLQETTDKGDRNPSSVNLLIQFQRSGIWNTEFDITINGKITTQYLASVVADNLPPRPFSVRMVRVTPDSTTDRLQNKTLWSSYTEIIDIRQGYPGTAVAGLLVDAEQFGSQQVTRNYHLRGRIFQVPSNYDPDTRTYTGLWDGAFKPAYTNNPAWCTMDKLTHPRYGLGRRIGGADVDKWALYAIAQYCDQPVPDGFGGTEPRMTLNAYITTQRKAYDVLADFCSVMRCMPVWNGRKMTFIQDRPSDKAWTYTNGNVVGGRFKYSFSALKDRHNAVEVRYTDPLNGWQTSTELVEDHASQARYGRNLLKMDAFGCTSRGQAHRTGLWVMMTELLETQTVDFSVGAEGLRHTPGDIIEVCDNDYAGASVGGRITDLDISTRTLTLDREITLPESGATTLNIVGPDGKPFSTEIQSQPAPDRVVTKVLPETVQPYSIWGLKLPSLKRRLFRCVRIKENDDGTYAITALQHVPEKESIVDNGAHFDPLPGTTNSIIPPAVQHLTVSTDNDSTLYQAKAKWGTPRVVKDVRFVVRLTTGSGNEGDPVRLVTTATTSETEYAFHELPLGDYTLTVRAINGYGQQGEPASVAFSIQAPEAPSTIEMTPGYFQITVTPHQTVYDASVQYEFWYSATQLATAADIQSKAQYLGVGSFWIKDGLKPLHDAWFYVRSVNLAGKSVFAEASGRPGDDAKGYLDFFKGLITETYLGTELLKKIDLTENNASKLQQFSKEWQDANDKWSATWGVKIEQTKDGKYYVAGLGLSMEDTPDGKISQFLVAADRIAY
complement(2769..3473)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tip assembly protein; Lambda gpI homolog; GUK00_RS22700; phage(gi169257316)     3.19e-170           SalmonellaentericasubspentericaserovarTyphimuriumMATTDTLNMAAPAMVRICLYGDLQRFGKRISLSIKTAAEGIHALAIQLPGFRQRMNEGWYQVRIAGSDMAPDTLTARLNESLPPGAVVHIVPRMAGAKNGIWQVVAGAALIGASFIPGLNAVAAAVLFSAGTSMALGGVAQMLTPVPKTPTVGQADNGKQNTYFSSLENMVAQGNPVPVLYGEMKIGSRVISQMMSTRDESTSGKVVVIGSPLQANTTSRQDGGITRPSVVIRQ
complement(3371..4108)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tip assembly protein; Lambda gpK homolog; GUK00_RS22705; phage(gi169257315)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMINDDILAHARQCAPAESCGYVVRTAQGERYFPCENLSAEPTMYFRISPEDYLNARNRGDIVALVHSHPDGKPCLSSADRTLQIQSGLDWWLVCDNRIHKFRCVPHLTGRQFEHGVTDCYTLFRDAYHLAGIDMPDFDREDDWWSQGKSLYLDHLEAAGFYRVNPEDAQPGDVLICCFGSPTPNHAAIYCGNGELLHHIPEQLSKREGYNDKWQRRTHSIWRHRQWCESAFTGIYNDLESASASA
complement(4118..4813)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tip assembly protein; Lambda gpL homolog; GUK00_RS22710; phage(gi169257314)     1.10e-173           SalmonellaentericasubspentericaserovarTyphimuriumMQDIPQETLSETTKAEQSAKVDLWEFDLTAIGGERFFFCNEPNEKGEPLTWQGRQYEPYPIQVQDFEMNGKGASPRPNLVVANLFGLVTGMAEDLQSLVGASVVRHQVYSKFLDAVNFSNGNPDADPEQEAVARYNVEQLSELDSSTATIILASPAETDGSVVPGRTMLADSCPWDYRDENCGYDGPPVADEFDKPTSDPKKDKCSHCMKGCEMRNNLVNAGFFASINKLS
4903..5436                         PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage virulence determinant; superoxide dismutase precursor; GUK00_RS22715; phage(gi169257313)     8.32e-125           SalmonellaentericasubspentericaserovarTyphimuriumMKYTILSLVAGALISCSAMAENTLTVKMNDALSSGTGENIGEITVSETPYGLLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGDLPGLVVNADGTATYPLLAPRLKSLSELKGHSLMIHKGGDNYSDKPAPLGGGGARFACGVIEK
complement(5553..6050)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage virulence determinant; Lom homolog; GUK00_RS22720; phage(gi169257312)     4.04e-113           SalmonellaentericasubspentericaserovarTyphimuriumMKKIVVAVLVGLALGSIGVANAAGYKNTVSIGYAYTDLSGWLSGNANGANIKYNWEDLDSGFGAMGSVTYTSADVNNYGYKVGDADYTSLLVGPSYRFNDYLNAYVMIGAANGHIKDNWGNSDNKTAFAYGAGIQLNPVENIAVNASYEHTSFSTDADSDVKAGT
complement(6149..6481)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tip assembly protein; Lambda gpM homolog; GUK00_RS22725; phage(gi169257311)     2.39e-78            SalmonellaentericasubspentericaserovarTyphimuriumMMKTFHWKVDPDMGVDSEPQVSVVRFGDGYEQRRASGINNDLKKYSVTIRVDREDGPGLEGFLSQHNGVKAFLWTPPYGYRQIKVVCRKWSVKAGLLKTTFTATFEQVIS
complement(6478..9465)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; GUK00_RS22730; phage(gi169257310)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMDSSDLVEKRIKRCMESSARSVAASAKSISAAMAQSQVATRTQSDAMAQLAREANEARERAVDLNQKLRAEAAQAAVVAQAQDAAAAAFYRQIDSVKQLSGGLQELQRIQAQVRQAKGRGDISQGDYLALVSEAAAKTRELTDAEALATQKKAQFIRRLKEQTAVQGLSRTELLRVKAAELGVSSAADVYIRKLDTATKSTHALGLKSAMARREIGVLIGELARGNFGALRGSGITLANRAGWIEQLMSPKGMMLGGLVGGVAAAVYGLGKAYYEGAKESEEFNKQLILTGSYAGKTTGKLNEMAKSLAGNGVTQHDAAGVLTQVVGSGAFTGQAVAMVSRTAARMQENVGQSVDETIRQFKRLQDDPVNAAKELDRALHFLTATQLEQIRVLGEQGRTADAAKIAMSAYSEEMNKRAGDVHDNLGWIEKAWNAVGDAAKWAWDRMLDIGREDTLDEKIATLQEKIARARKTPWTVSSSQTEYDQQQLNELQEQKRQKDLLDAKAQAERNYQKTQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRNAALERENERHKKAMARQKEKPKAYYNDEAGRLLLQYSQQQAQTEGLIAAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNAFNELKKKTLTLTSQLADEESRVRQQHALALATMGMGDQQRGRYEEHLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQELQASLDRRLAEWADYNAKVDAAQGDWTQGASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLGSVLGMFVFGASAGGSTPSGAYSSAALSVIPNADGGVYRSAGLSQYSGSIVNRPTFFAFARGAAVMGEAGPEAILPLRRGTDGKLGVVAAGSGGMAMFAPQYHIAISNTGPELTPQALKAVYDLGKKAAADFVQQQGRDGGRLSGAYR
complement(9545..9874)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail assembly chapterone - part of G+G' frameshift hybrid protein; Lambda gpT homolog; GUK00_RS22735; phage(gi169257309)     1.67e-73            SalmonellaentericasubspentericaserovarTyphimuriumMNNELHFVRQLAREFRRPDWRRMLDEMSSTELSEWADFFRENSFSDALLDAEFSTLKAQVFMLVTGKEIDAADFSLLTLPGAVQSMTEQDLLEVAVGIPGGVRFEPESR
complement(9871..10269)            PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail assembly chaperone; Lambda gpG homolog; GUK00_RS22740; phage(gi169257308)     1.56e-91            SalmonellaentericasubspentericaserovarTyphimuriumMFLKKETFTRGDASVALFELSGLQRIEYLEFIQKRTAKYDTDMDGTTEADKRVAYMQMALEINAWLVSRSLLNGDSSQDADTLYQSVQAKWSYEALDAGAESVLMLSGLSADKKDNASDSGNESEDMTPEKS
complement(10315..11064)           PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage major tail protein; Lambda gpV homolog; GUK00_RS22745; phage(gi169257307)     2.32e-179           SalmonellaentericasubspentericaserovarTyphimuriumMTDTTIPNPLAPVKGANTTFWMYNSEGDPFASPLSDNNWLRLANVKDLQPGELTADAEDNNYLDDENADWKSTTQGQKSAGDTSVTLAWKPGEDVQKKLIQLFTTGQKRGFRIKYPNGTVDVFRGWVSSLGKTVQSKDEIARTVKITSVGRPYMAEEDAPEVVSVTGLTVEPTNATVKVGATTAVTFTVKPDNVTDKSLRIATSDPTTATVTQAENIATVKGVKAGTVKIIGMTTDGNFTAIADITVQA
complement(11076..11477)           PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; GUK00_RS22750; phage(gi169257306)     8.79e-94            SalmonellaentericasubspentericaserovarTyphimuriumMTRHSAVRQAIIAALKKTDDGSTTFFDGRPVVVEEDELPAVAVYLSDAQYTGPEVDGDIWSAVLHVEVFLKATAPDSALDEQMENRVYPALGSVAGLGDIIRTMSAQGYNYQRDDEMAMWGSADLSYDITYSM
complement(11474..12040)           PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage morphogenesis protein; Lambda gpZ homolog; GUK00_RS22755; phage(gi169257305)     2.10e-134           SalmonellaentericasubspentericaserovarTyphimuriumMEVKGLKEAISVLKELDRGYVTRAKIRAINRVAKRVVSVSVRSAAALVVAGDNRRQGIPVRTVRRRARVRLARADKPFANIYVNCDPLTAIRLLSSPPSTPMRGRKGKPLRIGKYRFDRGFIAQAPNGWWQVFERSGAGRYPLNVVKIPVADALRHAFNTQVVLQMKTEMPKELKHEISYELRRFTKK
complement(12021..12320)           PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; GUK00_RS22760; phage(gi169257304)     4.66e-65            SalmonellaentericasubspentericaserovarTyphimuriumMADLFDGMKRRMDALIAERFGMKVNINGTDCIVVESDFLAELGPVEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVTRIRRFNGKPQLTLEENNGGKGA
complement(12313..12636)           PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; GUK00_RS22765; phage(gi169257303)     1.14e-69            SalmonellaentericasubspentericaserovarTyphimuriumMAKNYVEDGKTIEIVATTSLKSGDLVQVGDMFAVAVTDIAAGSAGTGIAEGVFSIPKLTTEDIAVGKKVYLKDNVVQTDATGSLPYVGVVWAPAANGDETVPVKING
complement(12727..14808)           PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage Clp protease involved in capsid processing; GUK00_RS22770; phage(gi169257302)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMKTTVAAIKMPPVMTAGNGRGEGSSNSWYSIRAAANNTAEVRIYDEIGGWGISARWFAEELAALGQINRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYIDGMACSMASAIAMVGNPIIMPENAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIPIYTEKTGKTPEDIAAMLAKETWMSGAECVSEGFADKLIQPVKAMACIHSKRVEEFEHMPQSIKGMIIAPQGNAGAQPQPQAKAPESQIQSQAQSLVTVDENAIRARLQEEQRNRITGIQNVFSLSGDRYASLMAKCIADVDCSLEMAKDRLLAEMAKGITPTNQLNGPQNRAEFHAGMYTGNGNITGDAVRAAVMARAGYEEAQKDNPYNCMTLRELARISLVARGTGVSSMNPMQMIGMAFTHSTSDFGNILLDVANKSILQGWQEAPETFDAWTKKGQLSDFRIAHRVGMGGFSSLRQVREGAEYKYVTTGDKQATIALATYGELFSITRQAIINDDMNMLTDVPMKLGRAAKATIADLVYDVLISNQKLSSDNVALFDKTKHANVLEKAVMDVASLDKARQLMRMQKEGDRHLNIRPAFVLVPTAMESVSNQVIKSVSVKGADINAGIINPVKDFATVIAEPRLDDASQSTFYLTAAKGSDTVEVAYLNGVDEPYIDQQEGFTVDGVTTKVRIDAGVAPVDYRGMVKCTV
complement(14732..16279)           PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage portal protein; GUK00_RS22775; phage(gi169257301)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMNFIDKAISMMSPGWAVSRLRSRAVIKAYEAAIPTRTHKIKRENRNANQLNQIAGKSLREQARWFDNNHDLVVGALDKMEERVIGAKGIIVEPQPLTVAGTLNNALAEQIRARWAEWSVSPDVTGQYTRPVLERLLLRTWLRDGEVFSQMVAGKMPGLEPVAGVPFWLEAMEPDYVPMEQTDSTNNLIQGIYFNDWQRPKSYIVCKSWPGFATAMVATKLIDAENMLHLKFTRRLNQARGVTLLAPVIIRLLDLKEYEDSERLAARISAAFAMFIRRSDAMVQDGDAPDYADKDRDLDIEPGTILKDLLPGEDIGTIKSDRPNANLESFRMGQLRAVAAGVRGSFSSIARNYDGTYSAQRQELVEAQEGYAILQDNFIAAVSRPVYRRWLATAITAGVIDVPTDTDMATLFNAVYSGPVMPWIDPLKEANAWRILIRGGAATESDWVRARGGAPAEVKRRRKAEIDENRKLGLVFDTDPAHDPGEQDNAGSEDNSGGDKNAAGDDSRERTRGGKQ
complement(16276..16482)           PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; GUK00_RS22780; phage(gi169257300)     1.91e-41            SalmonellaentericasubspentericaserovarTyphimuriumMTRAGLQELYNAYLEAELAVLKGKSIMLNGQSMTMESLEEIRKGRREIEDRLQRLNNPRRLFTRARLS
complement(16479..18617)           PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA packaging protein; terminase, large subunit; GUK00_RS22785; phage(gi169257299)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumMMTTVTKGKRKSRNSLASAVVAGCDISSMFRPPRRMKISDAVRKYMRVPRDAGNSVAWESTLTPYVVEAMNCLSSRSYDAVVFVAPARTGKTLGLIDGWISYNIVCDPSDMLVVQMTQDKAQEHSKRRLAKMFRHSPAIARRLSPHRNDNNVHDKTFRDGSFLKIGWPSINVFSSSDFKCVALTDYDRFPEDVDGEGDAFSLASKRTTTFMSLGMTLVESSPGREITDTRWKPSSPHEAPPTTGILSLYNRGDRRRWYWPCPHCGEYFQPSMANMTGYRHIADPMEASEAARIQCPHCHKLTEPQQKRELNNRGVWLREGQHIDRDGNITGEARRSRIASFWMEGPAAAYQTWAQLVYKLLTAEEEYERTGSEETLKAVINTDWGLPYQSRRSLEARSGDALMARAEDVSKRTVSDGVRFIVATVDVQGGKKRRFVVQVVGYGAYGERWIIDRYNIRYSLRVNEDGESQPVNPAARPEDWDLLKTDVLEKTYPLAADPEQFMPVLAMAVDSGGEDGVTDNAYAFWRRCKRKGVAGRVYLFKGDSTRREKLITKTYPDNTERSERRAKARGDVPLYLLQTNALKDRVAAALEREEPGANYIHFPDWLGPWFYEELTYEERSADGKWKKPGRGNNEALDLMCYAHALAILRGYERINWEKPPGWARLPEKDAAKTTQPVEVRQQEQHEGGEKAVKARKKKILPAWGGGSGGGWL
complement(18574..19107)           PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA packaging protein; terminase, small subunit; GUK00_RS22790; phage(gi169257298)     1.99e-127           SalmonellaentericasubspentericaserovarTyphimuriumMDQEIKSLELNITQLSAITGAHRQTIASRLKGVKTSGGNGSNLKIYRLVDILTAMMTMPAVTGENDPNKMKPSDRRAWFQSEMTRIELEKEMRTLIPASEVLSVYAVMAKTVVKTLEILPDLLERDAALPPDALEMTQKIIDQLREDLASMTYQACADAINGDDDDNGDEGQEEEQE
complement(19315..19794)           PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage lysis protein; Lambda gpRz homolog; GUK00_RS22795; phage(gi169257297)     8.64e-115           SalmonellaentericasubspentericaserovarTyphimuriumMFVGLLLVSLIVAGRLANHYRNNAITYKEQRDTVTHRLTLANATITDMTKRQRDVAALDEKYTKELADAKAENDALRDDVAAGRRRLYVNATCPAVPTGKSTSTARMDNAASPRLADSAQRDYFALKERVKTMQKQLEGAQAYIRTQCHGNAGKTSNQW
complement(19812..20264)           PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage lysis protein; endolysin; lysozyme; GUK00_RS22800; phage(gi169257296)     5.19e-107           SalmonellaentericasubspentericaserovarTyphimuriumMMRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAERLLNTGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFLS
complement(20248..20330)           phage holin, lambda family; GUK00_RS22805                                            N/A                 SalmonellaentericasubspentericaserovarTyphimuriumALSVWTSCAKSQLAHSKNVQGLMMRISGA
