gi|00000000|ref|NZ_WSUR01000004.1|  Salmonella enterica subsp. enterica serovar Typhi strain PHL3127 203756, gc%: 51.85%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
90802..90814                       attL                                                                                 N/A                 AGGTCTGGAGATT
101557..103608                     PROPHAGE_Escher_MG1655: protease II; GQ465_RS04870; phage(gi16129798)                0.0                 SalmonellaentericasubspentericaserovarTyphiMLPKANRIPYAMTVHGDTRIDNYYWLRDDTRSQPEVLDYLHQENEYGRKVMSSQQALQDRILKEIIDRIPPREVSAPYVKNGYRYRYIYEPGCEYAIYQRQSALSEEWNVWETLLDANQRAAHSEFYTLGGLAITPDNTIMALAEDYLSRRQYGLRFRNLESGNWYPELLDNVAPEFVWANDSLTLYYVRKHKKTLLPYQVWRHTIGTPSSQDELVYEEKDDTFYVSLHKTTSQHYVVIHLASATTSEVLLLDAELADAEPFSFLPRRKDHEYSLDHYQHKFYLRSNRNGKNFGLYRTRVRNENAWEELIPPREHIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWLAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDSGCYQSEHLWITARDGVEVPVSLVYHQKYFRKGQNPLLVYGYGSYGSSIDADFSSSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKRNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINERPELFHGVIAQVPFVDVLTTMLDESIPLTTGEFEEWGNPQDIEYYDYMKSYSPYDNVKAQDYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDQRLLLLCTDMDSGHGGKSGRFKSYEGVALEFAFLIGLAQGTLHSA
complement(103645..104343)         PHAGE_Yersin_fHe_Yen9_04_NC_042116: L shaped tail fiber protein; GQ465_RS04875; phage(gi100273)     5.11e-18            SalmonellaentericasubspentericaserovarTyphiMLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEEMVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYLEDVQAGEQRSNGTPQ
complement(104367..105023)         carbon-nitrogen hydrolase family protein; GQ465_RS04880                              N/A                 SalmonellaentericasubspentericaserovarTyphiMSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKPLPAPPDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIGPSFTLFTTSQCLNEPELHASTSRLQRFSHKYALAVLMANACGSSALWDESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
complement(105131..105361)         PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; GQ465_RS04885; phage(gi422936677)     1.18e-22            SalmonellaentericasubspentericaserovarTyphiMKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK
105499..105873                     CopC domain-containing protein YobA; GQ465_RS04890                                   N/A                 SalmonellaentericasubspentericaserovarTyphiMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFFEGIEPGFSGATITGPQQESIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK
105874..106749                     copper homeostasis membrane protein CopD; GQ465_RS04895                              N/A                 SalmonellaentericasubspentericaserovarTyphiMMLTFVWITLRFIHFASLMLVYGCALYGAWLAPASIRRLMTRRFLHLQRHAAAWSVISAAFMLAIQGGLMGGGWPDVFSVSVWGAVLQTRFGAVWIWQIILALVTLAVVVIAPVKMQRRLLILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAAAWFGGLLPVVYCMRMAQGRWRQHAISAMMSFSRYGHFFVAGVLLTGIGNTLFITGFTAIWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGGIVLAIVSLFATLEPF
106766..107119                     PHAGE_Entero_PsP3_NC_005340: gp28; GQ465_RS04900; phage(gi41057381)                  1.81e-11            SalmonellaentericasubspentericaserovarTyphiMKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAIIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS
complement(107483..107788)         PHAGE_Entero_HK022_NC_002166: integrase; GQ465_RS04905; phage(gi9634144)             1.60e-17            SalmonellaentericasubspentericaserovarTyphiIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKARKISGVKCSDNPPTFHKIRSLAGRLYKNERGEEFAQKLLGHTSENTTKLYLDERDNKAYVML
complement(107790..108151)         PHAGE_Salmon_epsilon15_NC_004775: RecT; GQ465_RS04910; phage(gi30387413)             1.42e-19            SalmonellaentericasubspentericaserovarTyphiATTEIRKVPALGDCDTMSFVSAIVQCSQLGLEPGGALGHAYLLPFGNKNEKSGKKTFSLLATGESTLPAVPDRLPAFPRALSVKVTISASSLVWKRSWYTVRVRTKMHRLLMSMPLPATT
108275..108670                     PHAGE_Shigel_Stx_NC_029120: LygF; GQ465_RS04915; phage(gi985761265)                  4.15e-23            SalmonellaentericasubspentericaserovarTyphiMSRNYTPAQKAEIQKRLTELVRTHGRMTFGELRKITGLTIFTARHYLEKAESCGDLYQAGRSGIFPSEQAFLLWKKREDARITRFLKTPEGVVSSYDRTRNVICTECRNSVTMQRVLAFYRGNYREAKSA
complement(108956..110086)         PHAGE_Bacill_SP_15_NC_031245: prohead protease; GQ465_RS04920; phage(gi100150)       4.34e-20            SalmonellaentericasubspentericaserovarTyphiMGQDSDDRRRTSSAGRVWQDHKDMVRQALRVSIPWFTFVNISFALIILFRHILISDFDKSISAQTGILPLIDDIMGSIIVFSFLILLFIYRLPARFTPLCLVMLLILSLMWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADLVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTAGDTVTGIIARADEALYRAKQQGRNRWVK
117834..117846                     attR                                                                                 N/A                 AGGTCTGGAGATT
