gi|00000000|ref|NZ_WSUO01000001.1|  Salmonella enterica subsp. enterica serovar Typhi strain PHL4653 221912, gc%: 51.02%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1..1413                            PHAGE_Salmon_Fels_2_NC_010463: P2 gpH-like protein; GQS43_RS00005; phage(gi169936030)     5.51e-150           SalmonellaentericasubspentericaserovarTyphiSSQIIAEQVIPETEGGWWIREVGLFDETGALIAVGNCPESYKPQLTEGSGRTQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELKVYVDDLMAKHLAAPDPHSQYAQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAAMVDSAPAALDTLNELAAALGNDPNFATTMLNALGGKQPLDNTLTNLSGKDVAGLLAYFGLGETINRAADALQKSQNGADIPDKPRFVQNIGLKETLNPTKRVSIGNIGTGVFDGSTPCINIGDSDSGFIGSADGVLDIYCNGAKVGYINGNGLHMLTDIHFDNASMTTNGDIFSSVWGDNWLSIWITNQLNTRGTIDWINSELAIRDNNINTRATIDYVNQTFARKNTGSIQDWGWILDDSTGFIMQWGTLGNSNGTYNFPRAFPVGCFAVFVTNTNAQGTQVDNAFGYPVSNSQFFAATKSSGMANLVNNFPVAWFAIGR
1420..1827                         PHAGE_Salmon_Fels_2_NC_010463: P2 gpG-like protein; GQS43_RS00010; phage(gi169936028)     3.06e-83            SalmonellaentericasubspentericaserovarTyphiMSEYYYSFKEKGFFWQPDTESDNYPDDLIPLTDEYYRELMQGQVDGKYIEHRKGGPVLVEHREYTPEELVAQAEARKAELLAEAESVIAPLARAVKLKIATDEEIKRLEAWELYSVMVNRVDTANPDWPEKPAQI
1484..1495                         attL                                                                                 N/A                 ATAATTACCCTG
complement(2025..2747)             SPI-1 type III secretion system guanine nucleotide exchange factor SopE; GQS43_RS00015     N/A                 SalmonellaentericasubspentericaserovarTyphiVTKITLSPQNFRIQKQETTLLKEKSTEKNSLAKSILAVKNHFIELRSKLSERFISHKNTESSATHFHRGSASEGRAVLTNKVVKDFMLQTLNDIDIRGSASKDPAYASQTREAILSAVYSKNKDQCCNLLISKGINIAPFLQEIGEAAKNAGLPGTTKNDVFTPSGAGANPFITPLISSANSKYPRMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANKYIQYTP
2961..3179                         PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; GQS43_RS00020; phage(gi169936026)      2.11e-39            SalmonellaentericasubspentericaserovarTyphiMECELIVERTSAGLEVVRSKGRIGGRRPKLTPEQWEQAGRLLAAGETRHRVGLLFDVSISTLYKKFPVNQSR
3282..4454                         PHAGE_Salmon_Fels_2_NC_010463: major tail sheath protein; GQS43_RS00025; phage(gi169936025)     0.0                 SalmonellaentericasubspentericaserovarTyphiMAQDYHHGVRVVEINEGTRPITTVSTAIVGMVCTGDDADASVFPINKPVLLTDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVAQGETEAETTSNIIGGVTSDGKKTGMKALLSAQSQLGVKPRILGVPGHDTQAVATELLGVAQSLRGFAYLAANGCKTVEEAIAYRENFSQREGMLIWPDFINFDTVLKADATAYASARALGLRAKIDEQIGWHKTLSNVGVNGVTGISADVFWDLQDPATDAGLLNKNDVTTLIRKDGFRFWGSRCLSDDPLFAFENYTRTAQVLADTMAEAHMWAVDGVLNPSLARDIIEGLRAKMRSLVNQGYLIGGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDRYLVDFASRVAA
4464..4979                         PHAGE_Salmon_Fels_2_NC_010463: major tail tube protein; GQS43_RS00030; phage(gi169936024)     5.34e-121           SalmonellaentericasubspentericaserovarTyphiMALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKFEKYRGGGMPGAVDVDMGLDDGALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAVELVVRGRHKEVDSGEWKTGESSSTKVSSTNSYAKLTINGEVLYEVDLVNMVEIVGGVDLMEEHRNALGL
5034..5336                         PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like tail protein; GQS43_RS00035; phage(gi169936023)     6.06e-60            SalmonellaentericasubspentericaserovarTyphiMSDKLTEKTVKLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAIMDMDVGAMMTVIPRISSPTLTAQEMAELDPADLTAMAVEVVTFLLPKSVLADLPTT
5348..5470                         PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like protein; GQS43_RS00040; phage(gi169936022)     6.78e-20            SalmonellaentericasubspentericaserovarTyphiMVADIATIFHWSPSITDVMPLTDVLEWRHKAIQRSGASDE
5463..8243                         PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: hypothetical protein; GQS43_RS00045; phage(gi100011)     0.0                 SalmonellaentericasubspentericaserovarTyphiMSDNNLRLQVVLGAVDKLTRPFKNAQAGSKELASAIRQTRDQIKKLSDAGGQLKSFDQLTQSVSRTGAELDQARLRAQMMTREMSSLESPTKKQTQALEAQWRAVSRLEQKQQQETRQMAAARAELYRLGLSAGGGARETARIARETERYNRQLAEQERRLREVGERQRKLNAIKAKAEKTRELRNSLAGNGAGAMAAGVTTGMTLLAPVKAYSESENAANQLAGSMMGPGGKVAPEFEKINRLAVALGDKLPGTTADFQNMMTMLRRQGMSAQVILGGLGESAAYLGVQLQMAPTAAAEFAAKLQDATQTSEKDMMNLMDVIQKGFYAGVDSGNMLQGFSKISSAMNIINKKGLEAVKTFAPLLVMADQGSMAGESAGNAYRKIFQAALDADNIKAVNDDLKEKGAGIKFNFSDGKGGFGGLENMYAQLEKLKKLNPETQMATMKDLFGNDAETLQALNIMLSKGIEGYRETAAKLENQASLRERVDASLNTLGNKWEAATGTFTNAMASIGETVAPALKNLADWLGELASRLDGFVKRHPSLTSALFKMAAGFAVAATAVGAISLALASILGPMAIIRVSAGMLGLKFASVGGLVRAALGGLGKSVLWLGRLMFANPILAVIGLIAAGAIYIWQNWDTLGPKFKAMWDAVCNATGTAWDWIKEKASAAWEGIKSLFFNYTLPGLIAKNWDAIKSGVSEAWANIRQSISDKWNAILADVSALPAKFQDTGSAIIDSILDGINAKWETLKSKLSSVTDYLPDWMTENNKTQDKAQVQVVGGAAAAAVPFAGMYDSGGIIPRGQFGIVGENGPEIVNGPAKVTSRRRTAALASIVAGVMGVAAAPAEAAPLHPYSLPTAAYKQSQPAKSASAPPVMHFETHAPITIYAQPGQSAQDIAREVARQLDERERKTRAKARSNFSDQGGYE
8243..8728                         PHAGE_Salmon_Fels_2_NC_010463: P2 gpU-like tail protein; GQS43_RS00050; phage(gi169936020)     8.78e-109           SalmonellaentericasubspentericaserovarTyphiMMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLGPDNDPLTLSGVLLPEVTGGRLSLLALEQMAELGKAWPLIEGSGTIYGMFVIESLSQTKTEFFESGMSRRIEFTLTLKRVDESLSDMFGSLSDQLSNLQDSATSAIGNIKNTVGGLLQ
8752..9825                         PHAGE_Salmon_Fels_2_NC_010463: tail protein; GQS43_RS00055; phage(gi169936019)       0.0                 SalmonellaentericasubspentericaserovarTyphiMNSRSPAFSITIEGKDVTTALDARLMSLTLTDNRGFEADQLDLELDDADGQIVLPRRGAVIQLALGWKGQPLFPKGAFTVDEIEHSGAPDRLTIRARSADFRETLNTRREKSWHQTTVGEVVKEIAARHNLKVALGKDLTDKVLDHMDQTNESDASFLMKLARQYGAIASVKDGNLLFIRQGQGRTASGKPLPVITITRKAGDGHRFTLADRGAYTGVIASWLHTREPKKKETTQVKRRHKKVATPKEPEAKQGDYLVGTDENVLVLNRTYANRGNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPIDDAEWTITTLTHTVSPDNGFTTSLELEVKIDDLEIE
9893..10111                        PHAGE_Escher_500465_1_NC_049342: hypothetical protein; GQS43_RS00060; phage(gi100043)     7.78e-43            SalmonellaentericasubspentericaserovarTyphiMMNCPKCGHSAHTRSSFQVTDSTKERYCQCQNINCGSTFVTHETVVRFIVTPALVNNAPPHPTVSGQGHMNF
complement(10198..10575)           PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: hypothetical protein; GQS43_RS00065; phage(gi100007)     9.26e-64            SalmonellaentericasubspentericaserovarTyphiMNKPLIALLLITSFSASADKIPSSIQNLIAVYDTRTHSLEDGGLTIRYNKRLLLVDAAESMFQGICNDYYMNKWKPGTIKRITLLNVTSDQGFEINAGGDECRKAGTMKDEQARTYRTSFIKPLQ
10709..10795                       peptidase; GQS43_RS00070                                                             N/A                 SalmonellaentericasubspentericaserovarTyphiPAYPVLYPEELQIFGVVIAFVHKTRSKD
10795..12069                       PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; GQS43_RS00075; phage(gi431811050)     0.0                 SalmonellaentericasubspentericaserovarTyphiMFALADVNSFYASCEKVFRPDLRNTPVVVLSNNDGCVIARSKEAKQLGIKMGVPWFQLKTTEFPVPVVAFSSNYELYASMSNRVMAHLEELAPRVEQYSIDEMFLDVRNIDSCIDFEDFGRQLREHVHSGTGLTIGVGMGPTKTLAKSAQWASKEWRQFEGVLALTSGNPKRTEKLLSLQPVDEIWGVGRRISKKLHTMGITTALQLARANPTFIRKNFSVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGERVTTYEAMRQAVCQYAERAAEKLRGERQFCRHVAVFVKTSPFAVNEPYYGNVASEKLTTPTQDTRDIIAAAVKALDRIWVKGHRYAKAGCMLNDFTPTGISQLNLFDEVQPHERSEQLMKVLDSINHSGMGKVWFAGRGIAPEWQMKRELLSPAYTTRWAELPVARLR
12201..12470                       hypothetical protein; GQS43_RS00080                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMRINVLLLTSLLVAGPALAGEAHVCKSQTVANSAANAELTDNTVFKCGESISGTIPSLAREGWKIVQQTDQADVTDPSKTYAQLIIQKD
complement(12570..12896)           DUF3085 domain-containing protein; GQS43_RS00085                                     N/A                 SalmonellaentericasubspentericaserovarTyphiMLKFSAKDLKPVLLEARKNHCGVVLVKDHGVYIMSETGELTPRGRKVAYAKGCHPEKDEAWWDTARAEVGGDDFGETINLTKSMINRILNERKPLYITASNEEFKIEC
complement(12971..13825)           hypothetical protein; GQS43_RS00090                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMCLDVTEEDITWQLRGSRSDYVNTRIQFDREKLMAVMDVMLSGLDSDETTLARCRQVLTLWIAGLDMLLKEAEQPDWLPRVHPHSSGQCDLLLKGNPAALTEADEETYLRVTGQQDLPAHRRIPQVIFSKTVRYWHRFESWLAQQLQDITQHCYQKLKCFVANCTTEPRQLREFRGEYGSLRLFVGPQDIDEIDILEFNPEYIVSWVDKVADGLFTPVCFVVNVYYKNGILLESFTWDSEVDNINRMTSSDYGEAMSQAISWVREQFEQPVIDQPVPQQPRLAA
complement(13944..14852)           hypothetical protein; GQS43_RS00095                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMLASFYIQRQLSKALGLSVNAEEVFYQVDDRESDYVNTDMVLNRDRLLSVMQFMLDDVALNPELRERCRQAERILTLWIRGLDALATVSEDMSILPRTITECSGRVDRLLPGDPQALLALPDDAFLRLTAQCHLMSGEQFPREQLAATMPYWTRFMAWIARELYQVEDRCLVQLGRLYRRLHVEPRKIRCFNLAFGRIELHMSGRDIDECQYLYAYDDASLEDYLEEIMAGNLTPVRFEVRVIYRNDSELNVFRRDADVIDVEHPHVSDWQNVVSEALDWLRQERTSLVEIPLTRPALKLAA
complement(14924..16873)           PHAGE_Faecal_FP_Taranis_NC_047914: hypothetical protein; GQS43_RS00100; phage(gi100023)     3.99e-39            SalmonellaentericasubspentericaserovarTyphiMNTSLHPDDISRFISGRLISSLAAGQVPWRGTIPGLPEHALTGVPFTGINVLLLWQAMQQRSLRSGRWLTGDDLRQLGGQVRSGEKPVTLVRYRPSLSLFKVINPEQCDGLPDTLQPGWPLPPRPQPSLNVIRDLLQNSGVPVIHRDNVLPVYRALHDRIELPPVASYVGEETYWQDILNLLVQATGHPQRLHRFGLTVDTRTDEVHEALVAELGAAFLSAALGLPGAMLSRLDVAPWVTYLQGDPWRLFRAAEAARKAMMWLKERRPSMTTVEMWQKMASLILETHYGFSLDDTTLGCRSVVERHIECGITPLMAINALARIYQWERYDQPQRSLFINEAGPDSEILTLSEIRPELLTCYRVPVPSGIPDRKAEAVQVESLPLLLAPAVSEGKSAANDDGPDDPDGNDNVVALPWAARRGKENPHIHRFVSIFNGIAPHESRWQVFSDFVHMAACSLYNAVHRDPDFEADYMRRVSHYSAEDANNMARLLSEVVMGLEFSPTDFLGRIYMISGLGNFHNAQYFTPYSVSYAMARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFNPQKQMVAYCVDIDPVASMMCYIQLSLMGIPAIVATGNSLTVEIKREMATPMFVLGRWHHRWQADRTRKAA
complement(16962..17420)           hypothetical protein; GQS43_RS00105                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMSVMTTNETPASTVAEPEVFRRTRNRFNQWLQAEFDRHYHTMRDGGYRSFLKKNHPTELLRYDEACEALRREEFARFAELQTLGLYLHLQVQQKEAQFRRRRNRLLLGMTLTGVVTSVLLYGHFHPEQFLLIGQELATLPGRILGFVGRLVP
complement(17498..17794)           hypothetical protein; GQS43_RS00110                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMMDIMALLSSTPPAVAIEEPVWEQLVKYPQAPDCENERLQRLIYHGFQALSQAPSGQGIVEFGYFCLPPDGDLHAPLWQNVCIKREYSDGQVTLTFDR
complement(17791..18243)           hypothetical protein; GQS43_RS00115                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMMLTTRLFVFLLHHLWRVMRWTGLTVYHGISVLYRRRQARLQASDWRPRTVYTGRWQLADDGQFCGRAVVLRLRDALKPGVELLYFGEEAAEPYYSERQFVDDRESVMVAEQMLLRFLGSRHRRQNRRNAPVSVLVTDVVTTAPVNDEAA
complement(18261..18470)           hypothetical protein; GQS43_RS00120                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMSHIHLPSVCEKTGNTLTPEQENRVRHLVHEECYSRDRAALIKLIGLMLLLKLAGTLMLAMLLLVLRLF
complement(18841..19221)           hypothetical protein; GQS43_RS00125                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMNVYQLKNRTDVLIWLSLIEGDLLSIQASLNAGLYPLYDDRQEEPEFECAVFNCGMAFGEFMERLESEDIDVLTTAGHELTGSIEHMGRMLCEPVWTQAVLLGRNEARADRAICAAEADGWLYDPA
complement(19317..19619)           hypothetical protein; GQS43_RS00130                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMNIFLTSLVSILRKALPRIRHGKSEWIANHTGYLRFQAEVWLDDNDHFHAVVNKRSGWMNPRYEQVVDCGKFDSFHCAMNTAYSQALELAHLRYAWELTD
complement(20343..21263)           PROPHAGE_Salmon_LT2: integrase; GQS43_RS00135; phage(gi16766072)                     1.37e-78            SalmonellaentericasubspentericaserovarTyphiMAGKTARSKVEKFRRDFVTLARDAGRAYATAADSMRIAKYFLNYLRDNGIKLRHTDSIKTRHVTGYLQFRKSQGISVRTIQNERAAIRGVLNKAGRYKLADPNNPLLSNKALGLEKSSRSGTKLPLSPEEFQKAFKEVEKSNRGVAATMLLSYTLGLRTKEAVESCKSVMTWKRALESGEHSVRVIFGTKGGRGRNTLIVDKDALRHAINYAEKVMKENNGKLIDRPDIRKAIDTYRYHVRRAGLTGEKAPHSMRYHFSQEAREYYEKNGFSGKEIYAQVSMDLGHGDGRGRYVKQVYFRDGTEDE
25189..25200                       attR                                                                                 N/A                 ATAATTACCCTG
