gi|00000000|ref|NZ_WSUO01000007.1|  Salmonella enterica subsp. enterica serovar Typhi strain PHL4653 489121, gc%: 50.88%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
375810..375822                     attL                                                                                 N/A                 AGGTCTGGAGATT
386565..388616                     PROPHAGE_Escher_MG1655: protease II; GQS43_RS04975; phage(gi16129798)                0.0                 SalmonellaentericasubspentericaserovarTyphiMLPKANRIPYAMTVHGDTRIDNYYWLRDDTRSQPEVLDYLHQENEYGRKVMSSQQALQDRILKEIIDRIPPREVSAPYVKNGYRYRYIYEPGCEYAIYQRQSALSEEWNVWETLLDANQRAAHSEFYTLGGLAITPDNTIMALAEDYLSRRQYGLRFRNLESGNWYPELLDNVAPEFVWANDSLTLYYVRKHKKTLLPYQVWRHTIGTPSSQDELVYEEKDDTFYVSLHKTTSQHYVVIHLASATTSEVLLLDAELADAEPFSFLPRRKDHEYSLDHYQHKFYLRSNRNGKNFGLYRTRVRNENAWEELIPPREHIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWLAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDSGCYQSEHLWITARDGVEVPVSLVYHQKYFRKGQNPLLVYGYGSYGSSIDADFSSSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKRNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINERPELFHGVIAQVPFVDVLTTMLDESIPLTTGEFEEWGNPQDIEYYDYMKSYSPYDNVKAQDYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDQRLLLLCTDMDSGHGGKSGRFKSYEGVALEFAFLIGLAQGTLHSA
complement(388653..389351)         PHAGE_Yersin_fHe_Yen9_04_NC_042116: L shaped tail fiber protein; GQS43_RS04980; phage(gi100273)     5.11e-18            SalmonellaentericasubspentericaserovarTyphiMLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEEMVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYLEDVQAGEQRSNGTPQ
complement(389375..390031)         carbon-nitrogen hydrolase family protein; GQS43_RS04985                              N/A                 SalmonellaentericasubspentericaserovarTyphiMSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKPLPAPPDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIGPSFTLFTTSQCLNEPELHASTSRLQRFSHKYALAVLMANACGSSALWDESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
complement(390139..390369)         PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; GQS43_RS04990; phage(gi422936677)     1.18e-22            SalmonellaentericasubspentericaserovarTyphiMKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK
390507..390881                     CopC domain-containing protein YobA; GQS43_RS04995                                   N/A                 SalmonellaentericasubspentericaserovarTyphiMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFFEGIEPGFSGATITGPQQESIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK
390882..391757                     copper homeostasis membrane protein CopD; GQS43_RS05000                              N/A                 SalmonellaentericasubspentericaserovarTyphiMMLTFVWITLRFIHFASLMLVYGCALYGAWLAPASIRRLMTRRFLHLQRHAAAWSVISAAFMLAIQGGLMGGGWPDVFSVSVWGAVLQTRFGAVWIWQIILALVTLAVVVIAPVKMQRRLLILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAAAWFGGLLPVVYCMRMAQGRWRQHAISAMMSFSRYGHFFVAGVLLTGIGNTLFITGFTAIWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGGIVLAIVSLFATLEPF
391774..392127                     PHAGE_Entero_PsP3_NC_005340: gp28; GQS43_RS05005; phage(gi41057381)                  1.81e-11            SalmonellaentericasubspentericaserovarTyphiMKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAIIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS
complement(392491..392796)         PHAGE_Entero_HK022_NC_002166: integrase; GQS43_RS05010; phage(gi9634144)             1.60e-17            SalmonellaentericasubspentericaserovarTyphiIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKARKISGVKCSDNPPTFHKIRSLAGRLYKNERGEEFAQKLLGHTSENTTKLYLDERDNKAYVML
complement(392798..393159)         PHAGE_Salmon_epsilon15_NC_004775: RecT; GQS43_RS05015; phage(gi30387413)             1.42e-19            SalmonellaentericasubspentericaserovarTyphiATTEIRKVPALGDCDTMSFVSAIVQCSQLGLEPGGALGHAYLLPFGNKNEKSGKKTFSLLATGESTLPAVPDRLPAFPRALSVKVTISASSLVWKRSWYTVRVRTKMHRLLMSMPLPATT
393283..393678                     PHAGE_Shigel_Stx_NC_029120: LygF; GQS43_RS05020; phage(gi985761265)                  4.15e-23            SalmonellaentericasubspentericaserovarTyphiMSRNYTPAQKAEIQKRLTELVRTHGRMTFGELRKITGLTIFTARHYLEKAESCGDLYQAGRSGIFPSEQAFLLWKKREDARITRFLKTPEGVVSSYDRTRNVICTECRNSVTMQRVLAFYRGNYREAKSA
complement(393964..395094)         PHAGE_Bacill_SP_15_NC_031245: prohead protease; GQS43_RS05025; phage(gi100150)       4.34e-20            SalmonellaentericasubspentericaserovarTyphiMGQDSDDRRRTSSAGRVWQDHKDMVRQALRVSIPWFTFVNISFALIILFRHILISDFDKSISAQTGILPLIDDIMGSIIVFSFLILLFIYRLPARFTPLCLVMLLILSLMWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADLVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTAGDTVTGIIARADEALYRAKQQGRNRWVK
402842..402854                     attR                                                                                 N/A                 AGGTCTGGAGATT
