gi|00000000|ref|NZ_WSUP01000070.1|  Salmonella enterica subsp. enterica serovar Typhi strain PHL3828 31459, gc%: 49.70%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
4663..4674                         attL                                                                                 N/A                 AATTTTTAAAAT
16745..16758                       attL                                                                                 N/A                 GAGTCCGGCCTTCG
16928..18193                       PHAGE_Entero_P4_NC_001609: integrase; GQS48_RS18005; phage(gi9627511)                0.0                 SalmonellaentericasubspentericaserovarTyphiMKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNIK
complement(18256..19332)           PHAGE_Plankt_PaV_LD_NC_016564: protein kinase; GQS48_RS18010; phage(gi371496162)     1.74e-13            SalmonellaentericasubspentericaserovarTyphiMIEVGRIIAERYKILSYVGKGGMQDVYKVLDLKLDLDLALKTPLPGLESKRFLKSAKIAAKINHHNIAKTFDYVEDNGNIFLAEEFVEGENLEEKLRHFDFLDPHYGACILHNLAKGIMASHKADVIHRDLKPSNVMVSGGVQISNLKITDFGIATLTQELFDEAAASGDLTRSTSGTIKGALPFMSPELMFGKKGKPIEASTDIWPLGAMMFKLLTGDYPFGVYLDAAVNVKTKNRMEWPTFMTANPQYQSLSQDLQKIVDKCLSYDSDKRPTAETLVKACETLCYLSEERHVGRVNNLIQGGISGFIDGTPSNSFFSMESVYGSRYPNTSTRNTVCYSTFDGHPWPRAHPVILWKD
complement(19329..20387)           PHAGE_Plankt_PaV_LD_NC_016564: protein kinase; GQS48_RS18015; phage(gi371496162)     2.49e-64            SalmonellaentericasubspentericaserovarTyphiMKINHVLPERYSLKSTELGGGMGDILICKDNHLDRDVIVKLLKDGEEERRLLDEQKALLKLRSKHVVQLYDLIDITVSEKTKKGLVLEYINGVDLNYNPSESHPEKLKKLWQIACGLSDIHSAKVIHRDIKPNNIRVDENKIVKILDFGLARTSGTEAFTHSVIGTLGYMAPELWKRKNISFDQKIDVYAYGVLVLDLFGIEKPDELYEHPPAAITNIPELGKILPKDLARTFISCLSHDKYARPAMSSVRDQIAKYLLKDRHRALFVLNGKKYEINAKNKSVTITWGTSGSMEIVYDGFDFKVGNFSGSATINNQQVITNKVFPSCSVITLINEKSRSFVTFDISRPEVIS
complement(20377..21540)           PHAGE_Plankt_PaV_LD_NC_016564: protein phosphatase; GQS48_RS18020; phage(gi371496161)     9.86e-38            SalmonellaentericasubspentericaserovarTyphiMFTERLARWLARSSAKSGINRPEDLNAVLSTDIGLVRAENQDLIAAIRVNTPSNVGNPFFAMALLDGMGGMQDGKQCATIALSTLFYSLIKFRSDPPESRLLKATLEANSVVYDYAKGHGGSTLSAVIIENGSAPVIVNVGDSRIYSFSLDCGLTAISSDDSLEALGGRGRGLLQFIGMGESIKPHINILDKNHKNIILTSDGTHFISHSAFEELLSHSSDFSTSAQRIAQYVQWCGAKDNASFGIINCNDIENSLNSHKDIGVELWDPHGNLHIMWMKNYPAAQNYFSQNIVDDQDKEPSPIIDDDGFENKKTLNNPSTKNLELDSETPQRELFSNESPEKSQDPSITSKAIKQRKNKDKKKAIEKIKKDQSVMINIKDEENKNED
complement(21816..22322)           PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; GQS48_RS18025; phage(gi9627520)     6.42e-69            SalmonellaentericasubspentericaserovarTyphiMKRKAELADLEREYREQLLAGDEQIPRRMQDLRDNIDVKKWEINQAAGRYIRSHEEVQHISIRNRLHDFMQQHGAELAATLAPELMGYHEQIPAVKQSAMQHSVDYLREALSVWLAAGEKINYSVQDNDMLTTIGFRPDAASRDDNREKFTPAQNLIYTRRRAELATR
complement(22398..22637)           PHAGE_Klebsi_ST147_VIM1phi7.1_NC_049451: hypothetical protein; GQS48_RS18030; phage(gi100036)     1.10e-19            SalmonellaentericasubspentericaserovarTyphiMFHCPFCKKTAHVRTSRYLSENVKQRYHQCTNIECSATFRTIESVDGVIRAAPEKPDPAPVTPPPPRKVQGCYSSPFRH
complement(22641..23384)           PHAGE_Entero_P4_NC_001609: head size determination protein sid; GQS48_RS18035; phage(gi9627518)     6.31e-20            SalmonellaentericasubspentericaserovarTyphiMKPELIIKSMQTVISKQDEGAEQRIAGALVALNEAKDAHTASMGKLSDIEASIQRCEQERQTALSESAQAEQDWRSRFRTLRGNLTPELKAEHSKRIASRELADEFTGLITELEKDKSLAMLGACSSGTAYISAHEKAFTTYANSEWKKALAGISPALLRAFLLRIRSLEMSGETSLRATVTRELGDALNMQSALYHFDMEQEPVLSVTGMNRPVITGVDMALLRSPARRMKLAAELAAKDHEQAEG
23924..24183                       PHAGE_Entero_P4_NC_001609: transcriptional regulator; GQS48_RS18045; phage(gi9627517)     2.96e-36            SalmonellaentericasubspentericaserovarTyphiMHTAFSSPSSAPAAPLMPVSDTVHERFIRLPEVMHLCGLSRSTIYDLISREAFPKQISLGGKNVAWAQSEITAWMTDRIATGVMTHGA
24180..24731                       PHAGE_Entero_P4_NC_001609: putative CI repressor; GQS48_RS18050; phage(gi9627516)     1.80e-47            SalmonellaentericasubspentericaserovarTyphiMMMTIQQTAPFSGLLLFIVSRYSFPAVAKSAAGRGNPSNLTATPDAPCVFFCVYALVHLLLAQWFHDLCSYRVMVAQAGPTSVGPVSVRAGISTPVWATTTERGNSGGSITCYLTEVALMATILTPSYPQFVFVFAAVRRADRKPRICMLRTVAGDEQAARLSLVRDYVLSFAGRLPVAEVRA
24728..24955                       hypothetical protein; GQS48_RS18055                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMRHTTITARDLECLEHMRNVGQLVNELMQVQDCATVRRDPVQQSQLTSVIYLMTAQLDGVVERCNQRWLTGEGNV
24952..25272                       PHAGE_Entero_P4_NC_001609: hypothetical protein; GQS48_RS18060; phage(gi9627513)     1.56e-66            SalmonellaentericasubspentericaserovarTyphiMKNPLPPVLRAALYRRAVACAWLTLCERQHRYPHLTLDALESAIAAELEGFYLRQHGEEKGRQIACALLEDLIEAGPLKAAPSLSFLGLTVMDELCARHITAPVLH
25287..27619                       PHAGE_Entero_P4_NC_001609: DNA primase; GQS48_RS18065; phage(gi9627512)              3.64e-90            SalmonellaentericasubspentericaserovarTyphiMKMNVTETVKQACGHWSRILPALGVKVIKNRHQACPVCGGSDRFRFDDKEGRGTWFCNQCGAGDGLKLVEKVFGVSASEAAGKVDAVTGNLPPVALEVIAAAEAETEADRKAAAALAVKLMEKTRPASGNAYLTRKGFPGHECVMLTATHKTGGVTFRAGDMVVPLYDNAGALVNVQLINSDGLKRTLKGGAVKGACHTIEGKNRRENACGLRRAMRPRSPYITPGKPSWWRCPPTYFLWRALPVRNTRPVRLSSPPTVTLTATARVKPLRPQTPARALSPCRRCSVTGMMRLCRKVKRPRGKPFMTPSGLRLTALSLPAKRNLPPAPVKRQCGCMNITAKRWPWMRTASSCPDMRQEYGKSFPRRILPATWPGCFSVCAPRSRRGKLPQWWRPNLFRSRTHRRAVLVFVTGYSIPPPALSARTTNRTGCARYVMLISPHRWRAKRWKPTPLISGAGLTALPVANRKNAMFWPRCLWFWRTVTTGSSFSKSPAPAGAEKVFWPKLRPCLPGKITPRRPPSKRWNHPANALRLASLYDCLTRKNGAVTGQDSRPSPAGMRSPLTRNTRMRTPPIFQRFWPTITRCALPTAAVVYRAAGLFTSRSRLPRRNATRSSGIKLRASWPSLCVSLCRSSATRQRAHCSSHSRTPTRHSVSSAMLTRRLIFAAIWKCSRRPTGCLWVMPVLSRVITVNIFITRIWPIWRLTGTGTCSAKCSGWGCPCKNTAIMRSGTQSRGYKPICRKRKATATGCRNARNPQQHAA
28148..28161                       attR                                                                                 N/A                 GAGTCCGGCCTTCG
28356..28496                       PROPHAGE_Escher_CFT073: putative prophage integrase; GQS48_RS18070; phage(gi26250313)     9.12e-19            SalmonellaentericasubspentericaserovarTyphiMALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWQLQYRFGGK
complement(28532..29681)           PROPHAGE_Escher_MG1655: IS3 transposase B; GQS48_RS18075; phage(gi16128284)          3.79e-18            SalmonellaentericasubspentericaserovarTyphiMTKAASTTKKPCKQHTPEFRDEALKLANALGWLRLPASLTCMNRSSTTGEENSKISSLLLNANRRCPQRSSVSINWQNGMRNLFSRRSRHTSRNANEVCLHRKTSGVQYQSHVPCTSGCPWLVRLASASSSDKPASAVPPCLRRPGGIQRKQRYGAPRLTDELRAQGRVYTVAASLRRQALRAKASRKISPVSYREHGLPVQRICSRTFTSVARIRNGWVTSCIFAPVKAGFIWPWLLTCGRSQPLAGLCPRGRHSLPAMHYTRCGGVNDRKSHHIYRQRQVLFSGLPELTETASAGQDERQRLLLRCLCGKLLPHAEGGMYAWRGLCQPGNNAGSSVLYVRLQSLASPQCLWRSQSGTIKPEPRLA
29951..29962                       attR                                                                                 N/A                 AATTTTTAAAAT
