gi|00000000|ref|NZ_WSUP01000082.1|  Salmonella enterica subsp. enterica serovar Typhi strain PHL3828 25793, gc%: 49.93%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
4317..4328                         attL                                                                                 N/A                 TCAACATAGCGC
4531..5451                         PROPHAGE_Salmon_LT2: integrase; GQS48_RS19485; phage(gi16766072)                     1.37e-78            SalmonellaentericasubspentericaserovarTyphiMAGKTARSKVEKFRRDFVTLARDAGRAYATAADSMRIAKYFLNYLRDNGIKLRHTDSIKTRHVTGYLQFRKSQGISVRTIQNERAAIRGVLNKAGRYKLADPNNPLLSNKALGLEKSSRSGTKLPLSPEEFQKAFKEVEKSNRGVAATMLLSYTLGLRTKEAVESCKSVMTWKRALESGEHSVRVIFGTKGGRGRNTLIVDKDALRHAINYAEKVMKENNGKLIDRPDIRKAIDTYRYHVRRAGLTGEKAPHSMRYHFSQEAREYYEKNGFSGKEIYAQVSMDLGHGDGRGRYVKQVYFRDGTEDE
6175..6477                         hypothetical protein; GQS48_RS19490                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMNIFLTSLVSILRKALPRIRHGKSEWIANHTGYLRFQAEVWLDDNDHFHAVVNKRSGWMNPRYEQVVDCGKFDSFHCAMNTAYSQALELAHLRYAWELTD
6573..6953                         hypothetical protein; GQS48_RS19495                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMNVYQLKNRTDVLIWLSLIEGDLLSIQASLNAGLYPLYDDRQEEPEFECAVFNCGMAFGEFMERLESEDIDVLTTAGHELTGSIEHMGRMLCEPVWTQAVLLGRNEARADRAICAAEADGWLYDPA
7324..7533                         hypothetical protein; GQS48_RS19500                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMSHIHLPSVCEKTGNTLTPEQENRVRHLVHEECYSRDRAALIKLIGLMLLLKLAGTLMLAMLLLVLRLF
7551..8003                         hypothetical protein; GQS48_RS19505                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMMLTTRLFVFLLHHLWRVMRWTGLTVYHGISVLYRRRQARLQASDWRPRTVYTGRWQLADDGQFCGRAVVLRLRDALKPGVELLYFGEEAAEPYYSERQFVDDRESVMVAEQMLLRFLGSRHRRQNRRNAPVSVLVTDVVTTAPVNDEAA
8000..8296                         hypothetical protein; GQS48_RS19510                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMMDIMALLSSTPPAVAIEEPVWEQLVKYPQAPDCENERLQRLIYHGFQALSQAPSGQGIVEFGYFCLPPDGDLHAPLWQNVCIKREYSDGQVTLTFDR
8374..8832                         hypothetical protein; GQS48_RS19515                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMSVMTTNETPASTVAEPEVFRRTRNRFNQWLQAEFDRHYHTMRDGGYRSFLKKNHPTELLRYDEACEALRREEFARFAELQTLGLYLHLQVQQKEAQFRRRRNRLLLGMTLTGVVTSVLLYGHFHPEQFLLIGQELATLPGRILGFVGRLVP
8921..10870                        PHAGE_Faecal_FP_Taranis_NC_047914: hypothetical protein; GQS48_RS19520; phage(gi100023)     3.99e-39            SalmonellaentericasubspentericaserovarTyphiMNTSLHPDDISRFISGRLISSLAAGQVPWRGTIPGLPEHALTGVPFTGINVLLLWQAMQQRSLRSGRWLTGDDLRQLGGQVRSGEKPVTLVRYRPSLSLFKVINPEQCDGLPDTLQPGWPLPPRPQPSLNVIRDLLQNSGVPVIHRDNVLPVYRALHDRIELPPVASYVGEETYWQDILNLLVQATGHPQRLHRFGLTVDTRTDEVHEALVAELGAAFLSAALGLPGAMLSRLDVAPWVTYLQGDPWRLFRAAEAARKAMMWLKERRPSMTTVEMWQKMASLILETHYGFSLDDTTLGCRSVVERHIECGITPLMAINALARIYQWERYDQPQRSLFINEAGPDSEILTLSEIRPELLTCYRVPVPSGIPDRKAEAVQVESLPLLLAPAVSEGKSAANDDGPDDPDGNDNVVALPWAARRGKENPHIHRFVSIFNGIAPHESRWQVFSDFVHMAACSLYNAVHRDPDFEADYMRRVSHYSAEDANNMARLLSEVVMGLEFSPTDFLGRIYMISGLGNFHNAQYFTPYSVSYAMARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFNPQKQMVAYCVDIDPVASMMCYIQLSLMGIPAIVATGNSLTVEIKREMATPMFVLGRWHHRWQADRTRKAA
10942..11850                       hypothetical protein; GQS48_RS19525                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMLASFYIQRQLSKALGLSVNAEEVFYQVDDRESDYVNTDMVLNRDRLLSVMQFMLDDVALNPELRERCRQAERILTLWIRGLDALATVSEDMSILPRTITECSGRVDRLLPGDPQALLALPDDAFLRLTAQCHLMSGEQFPREQLAATMPYWTRFMAWIARELYQVEDRCLVQLGRLYRRLHVEPRKIRCFNLAFGRIELHMSGRDIDECQYLYAYDDASLEDYLEEIMAGNLTPVRFEVRVIYRNDSELNVFRRDADVIDVEHPHVSDWQNVVSEALDWLRQERTSLVEIPLTRPALKLAA
11969..12823                       hypothetical protein; GQS48_RS19530                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMCLDVTEEDITWQLRGSRSDYVNTRIQFDREKLMAVMDVMLSGLDSDETTLARCRQVLTLWIAGLDMLLKEAEQPDWLPRVHPHSSGQCDLLLKGNPAALTEADEETYLRVTGQQDLPAHRRIPQVIFSKTVRYWHRFESWLAQQLQDITQHCYQKLKCFVANCTTEPRQLREFRGEYGSLRLFVGPQDIDEIDILEFNPEYIVSWVDKVADGLFTPVCFVVNVYYKNGILLESFTWDSEVDNINRMTSSDYGEAMSQAISWVREQFEQPVIDQPVPQQPRLAA
12898..13224                       DUF3085 domain-containing protein; GQS48_RS19535                                     N/A                 SalmonellaentericasubspentericaserovarTyphiMLKFSAKDLKPVLLEARKNHCGVVLVKDHGVYIMSETGELTPRGRKVAYAKGCHPEKDEAWWDTARAEVGGDDFGETINLTKSMINRILNERKPLYITASNEEFKIEC
complement(13324..13593)           hypothetical protein; GQS48_RS19540                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMRINVLLLTSLLVAGPALAGEAHVCKSQTVANSAANAELTDNTVFKCGESISGTIPSLAREGWKIVQQTDQADVTDPSKTYAQLIIQKD
complement(13725..14999)           PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; GQS48_RS19545; phage(gi431811050)     0.0                 SalmonellaentericasubspentericaserovarTyphiMFALADVNSFYASCEKVFRPDLRNTPVVVLSNNDGCVIARSKEAKQLGIKMGVPWFQLKTTEFPVPVVAFSSNYELYASMSNRVMAHLEELAPRVEQYSIDEMFLDVRNIDSCIDFEDFGRQLREHVHSGTGLTIGVGMGPTKTLAKSAQWASKEWRQFEGVLALTSGNPKRTEKLLSLQPVDEIWGVGRRISKKLHTMGITTALQLARANPTFIRKNFSVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGERVTTYEAMRQAVCQYAERAAEKLRGERQFCRHVAVFVKTSPFAVNEPYYGNVASEKLTTPTQDTRDIIAAAVKALDRIWVKGHRYAKAGCMLNDFTPTGISQLNLFDEVQPHERSEQLMKVLDSINHSGMGKVWFAGRGIAPEWQMKRELLSPAYTTRWAELPVARLR
complement(14999..15085)           peptidase; GQS48_RS19550                                                             N/A                 SalmonellaentericasubspentericaserovarTyphiPAYPVLYPEELQIFGVVIAFVHKTRSKD
15219..15596                       PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: hypothetical protein; GQS48_RS19555; phage(gi100007)     9.26e-64            SalmonellaentericasubspentericaserovarTyphiMNKPLIALLLITSFSASADKIPSSIQNLIAVYDTRTHSLEDGGLTIRYNKRLLLVDAAESMFQGICNDYYMNKWKPGTIKRITLLNVTSDQGFEINAGGDECRKAGTMKDEQARTYRTSFIKPLQ
complement(15683..15901)           PHAGE_Escher_500465_1_NC_049342: hypothetical protein; GQS48_RS19560; phage(gi100043)     7.78e-43            SalmonellaentericasubspentericaserovarTyphiMMNCPKCGHSAHTRSSFQVTDSTKERYCQCQNINCGSTFVTHETVVRFIVTPALVNNAPPHPTVSGQGHMNF
complement(15969..17042)           PHAGE_Salmon_Fels_2_NC_010463: tail protein; GQS48_RS19565; phage(gi169936019)       0.0                 SalmonellaentericasubspentericaserovarTyphiMNSRSPAFSITIEGKDVTTALDARLMSLTLTDNRGFEADQLDLELDDADGQIVLPRRGAVIQLALGWKGQPLFPKGAFTVDEIEHSGAPDRLTIRARSADFRETLNTRREKSWHQTTVGEVVKEIAARHNLKVALGKDLTDKVLDHMDQTNESDASFLMKLARQYGAIASVKDGNLLFIRQGQGRTASGKPLPVITITRKAGDGHRFTLADRGAYTGVIASWLHTREPKKKETTQVKRRHKKVATPKEPEAKQGDYLVGTDENVLVLNRTYANRGNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPIDDAEWTITTLTHTVSPDNGFTTSLELEVKIDDLEIE
complement(17066..17551)           PHAGE_Salmon_Fels_2_NC_010463: P2 gpU-like tail protein; GQS48_RS19570; phage(gi169936020)     8.78e-109           SalmonellaentericasubspentericaserovarTyphiMMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLGPDNDPLTLSGVLLPEVTGGRLSLLALEQMAELGKAWPLIEGSGTIYGMFVIESLSQTKTEFFESGMSRRIEFTLTLKRVDESLSDMFGSLSDQLSNLQDSATSAIGNIKNTVGGLLQ
complement(17551..20331)           PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: hypothetical protein; GQS48_RS19575; phage(gi100011)     0.0                 SalmonellaentericasubspentericaserovarTyphiMSDNNLRLQVVLGAVDKLTRPFKNAQAGSKELASAIRQTRDQIKKLSDAGGQLKSFDQLTQSVSRTGAELDQARLRAQMMTREMSSLESPTKKQTQALEAQWRAVSRLEQKQQQETRQMAAARAELYRLGLSAGGGARETARIARETERYNRQLAEQERRLREVGERQRKLNAIKAKAEKTRELRNSLAGNGAGAMAAGVTTGMTLLAPVKAYSESENAANQLAGSMMGPGGKVAPEFEKINRLAVALGDKLPGTTADFQNMMTMLRRQGMSAQVILGGLGESAAYLGVQLQMAPTAAAEFAAKLQDATQTSEKDMMNLMDVIQKGFYAGVDSGNMLQGFSKISSAMNIINKKGLEAVKTFAPLLVMADQGSMAGESAGNAYRKIFQAALDADNIKAVNDDLKEKGAGIKFNFSDGKGGFGGLENMYAQLEKLKKLNPETQMATMKDLFGNDAETLQALNIMLSKGIEGYRETAAKLENQASLRERVDASLNTLGNKWEAATGTFTNAMASIGETVAPALKNLADWLGELASRLDGFVKRHPSLTSALFKMAAGFAVAATAVGAISLALASILGPMAIIRVSAGMLGLKFASVGGLVRAALGGLGKSVLWLGRLMFANPILAVIGLIAAGAIYIWQNWDTLGPKFKAMWDAVCNATGTAWDWIKEKASAAWEGIKSLFFNYTLPGLIAKNWDAIKSGVSEAWANIRQSISDKWNAILADVSALPAKFQDTGSAIIDSILDGINAKWETLKSKLSSVTDYLPDWMTENNKTQDKAQVQVVGGAAAAAVPFAGMYDSGGIIPRGQFGIVGENGPEIVNGPAKVTSRRRTAALASIVAGVMGVAAAPAEAAPLHPYSLPTAAYKQSQPAKSASAPPVMHFETHAPITIYAQPGQSAQDIAREVARQLDERERKTRAKARSNFSDQGGYE
complement(20324..20446)           PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like protein; GQS48_RS19580; phage(gi169936022)     6.78e-20            SalmonellaentericasubspentericaserovarTyphiMVADIATIFHWSPSITDVMPLTDVLEWRHKAIQRSGASDE
complement(20458..20760)           PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like tail protein; GQS48_RS19585; phage(gi169936023)     6.06e-60            SalmonellaentericasubspentericaserovarTyphiMSDKLTEKTVKLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAIMDMDVGAMMTVIPRISSPTLTAQEMAELDPADLTAMAVEVVTFLLPKSVLADLPTT
complement(20815..21330)           PHAGE_Salmon_Fels_2_NC_010463: major tail tube protein; GQS48_RS19590; phage(gi169936024)     5.34e-121           SalmonellaentericasubspentericaserovarTyphiMALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKFEKYRGGGMPGAVDVDMGLDDGALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAVELVVRGRHKEVDSGEWKTGESSSTKVSSTNSYAKLTINGEVLYEVDLVNMVEIVGGVDLMEEHRNALGL
complement(21340..22512)           PHAGE_Salmon_Fels_2_NC_010463: major tail sheath protein; GQS48_RS19595; phage(gi169936025)     0.0                 SalmonellaentericasubspentericaserovarTyphiMAQDYHHGVRVVEINEGTRPITTVSTAIVGMVCTGDDADASVFPINKPVLLTDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVAQGETEAETTSNIIGGVTSDGKKTGMKALLSAQSQLGVKPRILGVPGHDTQAVATELLGVAQSLRGFAYLAANGCKTVEEAIAYRENFSQREGMLIWPDFINFDTVLKADATAYASARALGLRAKIDEQIGWHKTLSNVGVNGVTGISADVFWDLQDPATDAGLLNKNDVTTLIRKDGFRFWGSRCLSDDPLFAFENYTRTAQVLADTMAEAHMWAVDGVLNPSLARDIIEGLRAKMRSLVNQGYLIGGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDRYLVDFASRVAA
complement(22615..22833)           PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; GQS48_RS19600; phage(gi169936026)      2.11e-39            SalmonellaentericasubspentericaserovarTyphiMECELIVERTSAGLEVVRSKGRIGGRRPKLTPEQWEQAGRLLAAGETRHRVGLLFDVSISTLYKKFPVNQSR
23047..23769                       SPI-1 type III secretion system guanine nucleotide exchange factor SopE; GQS48_RS19605     N/A                 SalmonellaentericasubspentericaserovarTyphiVTKITLSPQNFRIQKQETTLLKEKSTEKNSLAKSILAVKNHFIELRSKLSERFISHKNTESSATHFHRGSASEGRAVLTNKVVKDFMLQTLNDIDIRGSASKDPAYASQTREAILSAVYSKNKDQCCNLLISKGINIAPFLQEIGEAAKNAGLPGTTKNDVFTPSGAGANPFITPLISSANSKYPRMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANKYIQYTP
23450..23461                       attR                                                                                 N/A                 TCAACATAGCGC
complement(23967..24374)           PHAGE_Salmon_Fels_2_NC_010463: P2 gpG-like protein; GQS48_RS19610; phage(gi169936028)     3.06e-83            SalmonellaentericasubspentericaserovarTyphiMSEYYYSFKEKGFFWQPDTESDNYPDDLIPLTDEYYRELMQGQVDGKYIEHRKGGPVLVEHREYTPEELVAQAEARKAELLAEAESVIAPLARAVKLKIATDEEIKRLEAWELYSVMVNRVDTANPDWPEKPAQI
complement(24381..25793)           PHAGE_Salmon_Fels_2_NC_010463: P2 gpH-like protein; GQS48_RS19615; phage(gi169936030)     5.51e-150           SalmonellaentericasubspentericaserovarTyphiSSQIIAEQVIPETEGGWWIREVGLFDETGALIAVGNCPESYKPQLTEGSGRTQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELKVYVDDLMAKHLAAPDPHSQYAQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAAMVDSAPAALDTLNELAAALGNDPNFATTMLNALGGKQPLDNTLTNLSGKDVAGLLAYFGLGETINRAADALQKSQNGADIPDKPRFVQNIGLKETLNPTKRVSIGNIGTGVFDGSTPCINIGDSDSGFIGSADGVLDIYCNGAKVGYINGNGLHMLTDIHFDNASMTTNGDIFSSVWGDNWLSIWITNQLNTRGTIDWINSELAIRDNNINTRATIDYVNQTFARKNTGSIQDWGWILDDSTGFIMQWGTLGNSNGTYNFPRAFPVGCFAVFVTNTNAQGTQVDNAFGYPVSNSQFFAATKSSGMANLVNNFPVAWFAIGR
