gi|00000000|ref|NZ_WSUP01000089.1|  Salmonella enterica subsp. enterica serovar Typhi strain PHL3828 23889, gc%: 49.22%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
661..672                           attL                                                                                 N/A                 TCGGCAAAGAAC
complement(5484..6686)             PHAGE_Agroba_Atu_ph07_NC_042013: hypothetical protein; GQS48_RS20950; phage(gi100242)     1.37e-50            SalmonellaentericasubspentericaserovarTyphiMTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGDDLLGIYADAIREQVDAMQHLRLQEDEFQWLSGLPFFKPDYLNWLREFRYNPAQVCVTNDNGKLNIRLTGSWREVIMWEVPLLAVISELVHHYRSPNAGVDQALDALESKLVDFTALTANLDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGTSNYDLARRLALTPMGTQAHEWFQAHQQINPDLATSQRAALAAWLNEYPDQLGIALTDCITMDAFLRDFGIEFASRYQGLRHDSGDPVAWGEKAIAHYEKLGIDPLTKTLVFSDNLDLPKAVELYRHFASRVQLSFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPQVRKAS
complement(6881..8173)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage integrase; GQS48_RS20955; phage(gi169257268)     0.0                 SalmonellaentericasubspentericaserovarTyphiMANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIAGELRSSVCFAIRMGNFNYVEKFPNSTNLARFGQDRKEITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSSTVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLPQSMVAAQ
complement(8218..8466)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; GQS48_RS20960; phage(gi169257269)     2.25e-55            SalmonellaentericasubspentericaserovarTyphiMSNIIQLTPNKWVSEKVLIAVTGLKPGTITRARKESWMLGREYLHISPDGNPKPSSECIYNREAVDQWIEAQKKNQPGAKTT
complement(8507..8746)             PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS48_RS20965; phage(gi169257270)     1.99e-51            SalmonellaentericasubspentericaserovarTyphiMKLINRSKQSPVGRRACDIALAAHHEKFGDYGRQKHVTNYTVVVDGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN
complement(8752..9633)             PHAGE_Salmon_SEN34_NC_028699: methyl-directed repair DNA adenine methylase; GQS48_RS20970; phage(gi966201453)     0.0                 SalmonellaentericasubspentericaserovarTyphiMRYGSVCSGTAAMPIEEPALRTWRRPFLKWAGGKYSLLPELDRLIPAGKRLIEPFVGGGSVFLNSDKHERFLLADVNADLINLYQMLAVVPDSVIAEAMKAFRHLNDAENYTVIREAFNAQKLNATERAAAFLYLNRHCFNGLMRYNLDGFFNVGWGKYKAPYFPEEEIRAFRQKSHACVFMTAGFERTLRLAGDGDVVYCDPPYEPMPGTAGFTNYASGGFSWDSQVALAESCVAAHQRGAKVFISNSTAPRVIELYERHGFTLHRVNARRSISSKGSTRETANDIVASLGI
complement(9630..10694)            PHAGE_Salmon_SPN1S_NC_016761: putative bacteriophage protein; GQS48_RS20975; phage(gi374531224)     0.0                 SalmonellaentericasubspentericaserovarTyphiMSKIGDYFFEFPASRGLQGNTVVLMMTVPARALTRVLASDNHGNTLERSQRELNPARAKKFYEYLRTAYEKKEPFIIPPLVGNCDSFIEFEEFGNTNVGVARFPMDAEIKLFDGQHRAAGIAEFCRTYGEPIHIPMMLTHQLPLKTRQQFFSDINNNVSKPSAAINMAYNGRDKIAQDMVSFLSSHAMFSEITDFEHNVVPAKSDLWISFKPLSDATAKFSGNGDELATSDIYDIWEAWLKLTAIKGIRHGCTPVEYKRDYIQFHAVMINAFGYAMQELLRHRPAHIIVQMIEELVNNSTMSELENFFLISSWSGVCASTEKDRATVIASVASQKAASVRLIQAITTKSFEVAA
complement(10772..11452)           PHAGE_Salmon_SEN34_NC_028699: exonuclease; GQS48_RS20980; phage(gi966201454)         3.05e-167           SalmonellaentericasubspentericaserovarTyphiMTPEIILARTGIDVSNIEQGDDAWHRLRLGVITASEVHNVISRPKSGKKWTDMKMSYFLTLLAEVCTGVAPEVNARALAWGKQYEDDARTLFEFTTDVKVTGSPILFRDEDMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGIDAWYFANYDPRMKREGIHHVVVERDDKYMSLFNEMVPEFIEKMDEALKEIGFTFGEQWR
complement(11449..12234)           PHAGE_Salmon_SEN34_NC_028699: recombinational DNA repair protein RecT (prophage associated); GQS48_RS20985; phage(gi966201455)     0.0                 SalmonellaentericasubspentericaserovarTyphiMSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTRDGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTTYTTDRQPERDITPVSDETMREINDLLITLNKTWDDDLLPLCSQIFRRDIGASSDLTQIEAVKALGFLKQKAAEQKVEA
complement(12240..12536)           PHAGE_Salmon_SEN34_NC_028699: host-nuclease inhibitor Gamma; GQS48_RS20990; phage(gi966201456)     2.14e-65            SalmonellaentericasubspentericaserovarTyphiMNAYLTYDRIEAQDWTRHYQQIAREEKESELADDLEKGLSLHMLESLCMDELPRHGANKKAISRAFDDDVEFQERASEFVRYMAETFSRHQIDIESEE
complement(12627..12827)           PHAGE_Escher_HK639_NC_016158: hypothetical protein; GQS48_RS20995; phage(gi356870641)     1.68e-18            SalmonellaentericasubspentericaserovarTyphiMTNYGTTTLPRTSVVPGMLVKYQGRTYRASANVGKGLYLFTLFERLRTTNDEIEVYLNQHGKPATH
complement(13116..13520)           PHAGE_Phage_Gifsy_2_NC_010393: putative bacteriophage regulatory protein; repressor; Lambda gpCI analog; GQS48_RS21000; phage(gi169257276)     2.39e-18            SalmonellaentericasubspentericaserovarTyphiMNFGERLQRVLNETGITQSELGRRVGATSQSVNGWCQSGILPRKDILELLPKATGKPLYWFFMEDDDESDVPERLTQGGPTDLNDRQKRLLEIFDQLPTVEQDRFIELAGTRLQELDDFMAEYQRRRKIEPPSR
13650..13886                       PHAGE_Phage_Gifsy_2_NC_010393: putative bacteriophage regulatory protein; Lambda gpCro analog; GQS48_RS21005; phage(gi169257277)     8.67e-17            SalmonellaentericasubspentericaserovarTyphiMKVTVQRKILSVCSQAGLGRRLGRRAQTVNGWFKNKVPGELVVRVARAIDWKVTPHELRPDLYPNPTDGLPSQEASAK
13852..14226                       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage transcriptional activator; Lambda gpCII analog; GQS48_RS21010; phage(gi169257278)     6.23e-72            SalmonellaentericasubspentericaserovarTyphiMAYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
14311..15294                       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; Lambda gpo homolog; GQS48_RS21015; phage(gi169257279)     0.0                 SalmonellaentericasubspentericaserovarTyphiMSMSNTAEIYKFPAPIPTQQECRMADLENGYLRLANQIQDALCIVELSGREFRVLNAIIRLTYGWSKKSDRIANSLIADKTTLKVKHVSEAVLSLAYRNIIILRRIGQTRYIGINTNLDKWAYSKPHCSKCPVSFPDDEIATWIISVPETRDSYTRKGGRASPKTGIVIPENRDSVLPHSAIPENGDSYPRKEGRASPKTGNTKDIIPKTNIKDLTPFNPPKGKVKFDPLSIPVPEWLNAASWNEWVTYRQQSGKPIKTELTVTKAFRLLKECLDEGHDPVNVINTSIANGYQGLFKPKFALNDRRAGRDVNHISAPDKTIPTGFRG
15297..16046                       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; GQS48_RS21020; phage(gi169257280)     0.0                 SalmonellaentericasubspentericaserovarTyphiMKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRSEELDRMNQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGFASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYDGGQSEASLLDDLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGARVIDRLQMDGGMWVNFDWESYRKNVSHLRIVK
16057..16404                       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS48_RS21025; phage(gi169257281)     5.91e-79            SalmonellaentericasubspentericaserovarTyphiMARPKTHSERMIILERIIGLVKEQGRITTNDVVAIFGVHRTTAEKYLRIALERGGFIRHGRCGIFRDQRAVIDYDLRRYSSSQVTGFSALPVLEKSPVMQVYGASKMSINKGGAQ
16401..16925                       PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; GQS48_RS21030; phage(gi169257282)     7.32e-44            SalmonellaentericasubspentericaserovarTyphiMSNIDKRALREVAERATPGNWRRTSSLFNGITVTPFSLCGEEVTLAHTVEKRDAEFIAAANPATMLALLDELETKEEQRANWFRMAQKLGEDLDTAERLIAELDQRLIEYAGIATREARRVAELEARKVNLSKLSVGEVMHMTGFSRDYAEGWCAGNDNAIHEIRTAGIKVKES
16925..17398                       PHAGE_Gordon_Nymphadora_NC_031061: capsid maturation protease; GQS48_RS21035; phage(gi100067)     1.02e-68            SalmonellaentericasubspentericaserovarTyphiMESQSILDMCCGSRMFWFNKRDERAVFADIRAEEHILCDGRRLVISPDLIADFRALPFADASFPVVVFDPPHLERVGQTAWMGKKYGRLNKKTWRSDLRAGFKEAFRVLRAHGVLIFKWNETQIPVSQILALTDVKPIIGQRTGKNDKTHWIIFVKD
17402..17974                       PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; GQS48_RS21040; phage(gi24371543)     7.39e-66            SalmonellaentericasubspentericaserovarTyphiMTTITKEWLQQTIAEFENTRDDIPFGLSDDDAKILIVLKRALASLEREQVRHEHADWSDATFGDVGPIGPLKHLSKEALETAAELGDLSEWADMQFLLWDAQRRAGITDEQIALAMVEKLAVNKKREWPEPKDGEPRLHIKEQPVPVVPEECPEEIRDLMASHSDALFNDDDAQEIWNACRAAMLNGGKS
18820..18999                       hypothetical protein; GQS48_RS21045                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMGHALKKADRLYIPPRDKSMVAKPRAAISKACSHTGQVKNAFEFGFARYEKAMEELSKV
19010..19507                       PHAGE_Staphy_SPbeta_like_NC_029119: Fic/DOC family protein; GQS48_RS21050; phage(gi985761206)     7.04e-10            SalmonellaentericasubspentericaserovarTyphiMAIEYVEGVNYLSIEDIVYINRSLIEIQTPNEPIGVLNPNNLSSSQSRPSTIRYYEQTDDMFRLSAVLIESLIQNHPFANANKRTAMMAGYVFLLLNGYELTAPSDEVVTIAEGLARKDYAVDDLENWLCHWSREYDSRTLCETGGNMIQALVATSRYIRIKSNE
19692..19931                       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage damage-inducible protein DinI; GQS48_RS21055; phage(gi169257284)     3.26e-50            SalmonellaentericasubspentericaserovarTyphiMRIELVISRTKQLPEGAVPALEKELITRLQNQYENCNLTIRRGSQDGLSIVGAADGDKKRIQSILQETWESADDWFYAY
19987..20226                       PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; GQS48_RS21060; phage(gi423262436)     3.00e-53            SalmonellaentericasubspentericaserovarTyphiMLEDLPESGYAVIRCYDHCVVARFGSIPDSGRALMYRRGDEISFVPLHPDDIVGTPTLFTQMLEKAGYRITRCFDTLQM
20266..20868                       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS48_RS21065; phage(gi169257286)     5.23e-146           SalmonellaentericasubspentericaserovarTyphiMAHELQLIKQSSGILIPATPETSDILQSKIKLGAVLVAEFRQVRNPAFHRRFFALLNLGFEYWEPTGGAISANERKLVNGYAKFLAAYGGNESALLDAAEQYLEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEVEFQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSFAG
21077..21688                       PHAGE_Phage_Gifsy_2_NC_010393: NinG; GQS48_RS21070; phage(gi169257288)               5.36e-145           SalmonellaentericasubspentericaserovarTyphiMAKLPRRKCANKECRQWFHPIREGQIVCSYQCASTVGKEQTRKAREAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLGCISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVCNVYKSGNIEAYRAALVERYGEAAVLALENNNTPHRWTVEELKEIRLAALSDLRALKKLEAA
21183..21194                       attR                                                                                 N/A                 TCGGCAAAGAAC
21685..21831                       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS48_RS21075; phage(gi169257289)     1.76e-26            SalmonellaentericasubspentericaserovarTyphiMKPELIEILRMRWLRLRIYRYRGSFPVAYRILRNYVRIEAKREHRNES
21821..22618                       PHAGE_Phage_Gifsy_2_NC_010393: prophage antitermination protein; late gene regulator; Lamba gpQ homolog; GQS48_RS21080; phage(gi169257290)     0.0                 SalmonellaentericasubspentericaserovarTyphiMNLESLPKYFSPKSMMPGAVPCGITSDTLTITDVMASLGLLTAKAAVGIELYLAKAGVLSSENIIAYIRQLAEQRAERHGALRKMEKGKRSKFLDTMARYVFRDYSLSAASLVTCSSCHGAKLIDAEVFTNKVTYPDGKPPKWVKDTKGISPSDWEVWKSVREQVRVVCKACDGKGQVKNECRCRGRGEILDKKKSELQGVPVYKKCPRCKGRGYPRLKDTEIFKALGVTEMVWRYNYKLFFDRLVEHCHIEESYAEKVLGNVTR
23017..23142                       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS48_RS21085; phage(gi169257292)     1.23e-22            SalmonellaentericasubspentericaserovarTyphiMKMHNDPHSMDSQSIFAGSQLLPMEKTSHLALSVGFRSHLA
complement(23278..23727)           PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS48_RS21090; phage(gi169257293)     2.54e-106           SalmonellaentericasubspentericaserovarTyphiMKNTALGKFIFIVGTALLLGGCSGMVMPPYATHGTSVGIIAPAGGYSEWHTDSRNHTTGDSHSQSQGNCTQSEDSQLSENGLTRTHQSNCNTRSQTHSSSTSKTRSSSVGFSVGGPVGASIGLIKQMESMNRAPANDMSSNEMFKNFGF
