gi|00000000|ref|NZ_WSUN01000006.1|  Salmonella enterica subsp. enterica serovar Typhi strain PHL4949 488903, gc%: 50.88%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
87477..87898                       PHAGE_Entero_HK97_NC_002167: integrase; GQS42_RS04740; phage(gi9634162)              6.75e-07            SalmonellaentericasubspentericaserovarTyphiQFSHIIDERLYVKPIKTEMKIALPLSLTPPSMGLRLSTVIDRCRLVSRSEYLISAGIRKNRPNGSIHPDSLTKKFVAARKFTGINLVITHRHFTRSAAYPDDYIKMLTGKGLLRNSWDILPRTPRNSISTNAIIKLTCSGA
88028..88053                       attL                                                                                 N/A                 AAAAAGAGACCGAATACGATTCCTGT
89197..90111                       DMT family transporter; GQS42_RS04745                                                N/A                 SalmonellaentericasubspentericaserovarTyphiMRKVSISILFMLVSLTWGTTWLAMRIAVETIPPVFATGMRFMFAAPFLIIIAWLRKKNLLFPPGQRLFQFVICIFYFSIPFSLMIYGETYVNSGLAAIIFANMPVAVLIASVLFLNEKAKLMQIAGLTIAITALTGILLEETNTSTESHWQGITALISAVLIHAIIYTQCKKRSCTVSVITFNALPCLLAGLILSATGWFFERPQVSTFSVHSILATLYLGAFAGVFGILCYFALQQKANAFQASLVFLIFPLIAVSLEDYIYGYAISTHSMLLIIPLAIGIFLTLVARNIPVTSRCRDNSSQK
90244..90402                       hypothetical protein; GQS42_RS04750                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMFMFLPFLLALSVAMGAINRKDKVSYILWAVLLIVTILSFIHHMTNSLTLSF
90412..91026                       disulfide bond formation protein B; GQS42_RS04755                                    N/A                 SalmonellaentericasubspentericaserovarTyphiMKTHHHPTTFVHLINQIGLLGICVALVVAFYYQLVRHELPCPICLLQRAGLIIAGFGFLFNLCFGLRGIHYGMVIIGSILTGVMASRQICLHIMPGDTGYGSAFFGLHFYTWTLITSILIIIAVAVVLAISSMNAAFRSLNINPNLFSIVGWVFLLLITANLISTVLECGGGECAANPVTYKLLSKQDIAFLKTGLLTRTVLRL
complement(91435..93414)           MBL fold metallo-hydrolase; GQS42_RS04760                                            N/A                 SalmonellaentericasubspentericaserovarTyphiMRLKSIVKSFALAGLLSSTALTPLFAQEAPKGATASTKQANNALYNQLPFSDNTDFTNAHKGFIADLPAEVIKGEQGNVIWNPQQYAFIKEGEKSPDTVNPSLWRQSQLINISGLFEVTDGVYQIRNLDLSNMTIIEGKEGITVVDPLVSAETAKAGMDLYFKNRGNKPVVAIIYTHSHVDHYGGVRGVVDEADVKSGKVKVYAPAGFMEAAVAENIMAGNVMSRRASYMYGNLLKPDASGQVGAGLGTTTSAGTVTLIAPTNIIDKDGQKEVIDGLTYDFMLAPGSEAPSEMLWFIEEKKLIEAAEDVTHTLHNTYSLRGAKIREPLPWSKYINEAIVRWGDKAEIIMAQHHWPTWGNENVVGLLKSQRDLYRYINDQTLRMANEGLTRDEIAANFKLPDSLAKTWANRGYYGSISHDVKATYVLYLGWFDGNPATLDELPPEEAAKKFVEYMGGADAILQKAKADFDQGNYRWVAQVVSKVVFADPNNQNARNLEADALEQLGYQAESGPWRNFYLTGAQELRNGVVKGPTPNTASPDTVRAMTPEMFFDFLAVHINGEKAGNARAVFNIDLGSDGGKYKLELENGVLNHTANAEAKDADATITLNRDTLNKIILKEETLKQAQDKGEVNVTGNAAKLDEMLGYMDKFEFWFNIVTP
93810..94940                       PHAGE_Bacill_SP_15_NC_031245: prohead protease; GQS42_RS04765; phage(gi100150)       4.34e-20            SalmonellaentericasubspentericaserovarTyphiMGQDSDDRRRTSSAGRVWQDHKDMVRQALRVSIPWFTFVNISFALIILFRHILISDFDKSISAQTGILPLIDDIMGSIIVFSFLILLFIYRLPARFTPLCLVMLLILSLMWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLPALLLFIVPLWLTALLASVQLNQYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFLGDALRQTEPFALIMLDVDYFKNYNDNYGHQAGDACLAKVACVVKRSIRTPADLVARYGGEEFVVVLPSSSLNEAALVAKRIQTNLRETALPHVASAVSETVTVSMGITLSTAGDTVTGIIARADEALYRAKQQGRNRWVK
complement(95226..95621)           PHAGE_Shigel_Stx_NC_029120: LygF; GQS42_RS04770; phage(gi985761265)                  4.15e-23            SalmonellaentericasubspentericaserovarTyphiMSRNYTPAQKAEIQKRLTELVRTHGRMTFGELRKITGLTIFTARHYLEKAESCGDLYQAGRSGIFPSEQAFLLWKKREDARITRFLKTPEGVVSSYDRTRNVICTECRNSVTMQRVLAFYRGNYREAKSA
complement(95634..95744)           PHAGE_Escher_HK639_NC_016158: replication protein 14; GQS42_RS04775; phage(gi356870655)     7.47e-05            SalmonellaentericasubspentericaserovarTyphiIPPVRRQLAAPRHPAGPTPAQLMMEKFRRRKAAGRL
95745..96106                       PHAGE_Salmon_epsilon15_NC_004775: RecT; GQS42_RS04780; phage(gi30387413)             1.42e-19            SalmonellaentericasubspentericaserovarTyphiATTEIRKVPALGDCDTMSFVSAIVQCSQLGLEPGGALGHAYLLPFGNKNEKSGKKTFSLLATGESTLPAVPDRLPAFPRALSVKVTISASSLVWKRSWYTVRVRTKMHRLLMSMPLPATT
96108..96413                       PHAGE_Entero_HK022_NC_002166: integrase; GQS42_RS04785; phage(gi9634144)             1.60e-17            SalmonellaentericasubspentericaserovarTyphiIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKARKISGVKCSDNPPTFHKIRSLAGRLYKNERGEEFAQKLLGHTSENTTKLYLDERDNKAYVML
96534..96559                       attR                                                                                 N/A                 AAAAAGAGACCGAATACGATTCCTGT
complement(96777..97130)           PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; GQS42_RS04790; phage(gi971764937)     1.81e-11            SalmonellaentericasubspentericaserovarTyphiMKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAIIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS
complement(97147..98022)           copper homeostasis membrane protein CopD; GQS42_RS04795                              N/A                 SalmonellaentericasubspentericaserovarTyphiMMLTFVWITLRFIHFASLMLVYGCALYGAWLAPASIRRLMTRRFLHLQRHAAAWSVISAAFMLAIQGGLMGGGWPDVFSVSVWGAVLQTRFGAVWIWQIILALVTLAVVVIAPVKMQRRLLILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAAAWFGGLLPVVYCMRMAQGRWRQHAISAMMSFSRYGHFFVAGVLLTGIGNTLFITGFTAIWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGGIVLAIVSLFATLEPF
complement(98023..98397)           CopC domain-containing protein YobA; GQS42_RS04800                                   N/A                 SalmonellaentericasubspentericaserovarTyphiMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFFEGIEPGFSGATITGPQQESIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK
98535..98765                       PHAGE_Escher_HK639_NC_016158: DNA pol III theta; GQS42_RS04805; phage(gi356870660)     6.87e-20            SalmonellaentericasubspentericaserovarTyphiMKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK
98873..99529                       carbon-nitrogen hydrolase family protein; GQS42_RS04810                              N/A                 SalmonellaentericasubspentericaserovarTyphiMSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKPLPAPPDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIGPSFTLFTTSQCLNEPELHASTSRLQRFSHKYALAVLMANACGSSALWDESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
99553..100251                      PHAGE_Yersin_fHe_Yen9_04_NC_042116: L shaped tail fiber protein; GQS42_RS04815; phage(gi100273)     5.11e-18            SalmonellaentericasubspentericaserovarTyphiMLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEEMVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYLEDVQAGEQRSNGTPQ
complement(100288..102339)         PROPHAGE_Escher_MG1655: protease II; GQS42_RS04820; phage(gi16129798)                0.0                 SalmonellaentericasubspentericaserovarTyphiMLPKANRIPYAMTVHGDTRIDNYYWLRDDTRSQPEVLDYLHQENEYGRKVMSSQQALQDRILKEIIDRIPPREVSAPYVKNGYRYRYIYEPGCEYAIYQRQSALSEEWNVWETLLDANQRAAHSEFYTLGGLAITPDNTIMALAEDYLSRRQYGLRFRNLESGNWYPELLDNVAPEFVWANDSLTLYYVRKHKKTLLPYQVWRHTIGTPSSQDELVYEEKDDTFYVSLHKTTSQHYVVIHLASATTSEVLLLDAELADAEPFSFLPRRKDHEYSLDHYQHKFYLRSNRNGKNFGLYRTRVRNENAWEELIPPREHIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWLAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDSGCYQSEHLWITARDGVEVPVSLVYHQKYFRKGQNPLLVYGYGSYGSSIDADFSSSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKRNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINERPELFHGVIAQVPFVDVLTTMLDESIPLTTGEFEEWGNPQDIEYYDYMKSYSPYDNVKAQDYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDQRLLLLCTDMDSGHGGKSGRFKSYEGVALEFAFLIGLAQGTLHSA
