gi|00000000|ref|NZ_WSUN01000010.1|  Salmonella enterica subsp. enterica serovar Typhi strain PHL4949 161179, gc%: 52.49%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
133988..133999                     attL                                                                                 N/A                 TGTGACGTTACA
complement(142775..143977)         PHAGE_Agroba_Atu_ph07_NC_042013: hypothetical protein; GQS42_RS09980; phage(gi100242)     1.37e-50            SalmonellaentericasubspentericaserovarTyphiMTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGDDLLGIYADAIREQVDAMQHLRLQEDEFQWLSGLPFFKPDYLNWLREFRYNPAQVCVTNDNGKLNIRLTGSWREVIMWEVPLLAVISELVHHYRSPNAGVDQALDALESKLVDFTALTANLDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGTSNYDLARRLALTPMGTQAHEWFQAHQQINPDLATSQRAALAAWLNEYPDQLGIALTDCITMDAFLRDFGIEFASRYQGLRHDSGDPVAWGEKAIAHYEKLGIDPLTKTLVFSDNLDLPKAVELYRHFASRVQLSFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPQVRKAS
complement(144172..145464)         PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage integrase; GQS42_RS09985; phage(gi169257268)     0.0                 SalmonellaentericasubspentericaserovarTyphiMANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIAGELRSSVCFAIRMGNFNYVEKFPNSTNLARFGQDRKEITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSSTVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLPQSMVAAQ
complement(145509..145757)         PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; GQS42_RS09990; phage(gi169257269)     2.25e-55            SalmonellaentericasubspentericaserovarTyphiMSNIIQLTPNKWVSEKVLIAVTGLKPGTITRARKESWMLGREYLHISPDGNPKPSSECIYNREAVDQWIEAQKKNQPGAKTT
complement(145798..146037)         PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS42_RS09995; phage(gi169257270)     1.99e-51            SalmonellaentericasubspentericaserovarTyphiMKLINRSKQSPVGRRACDIALAAHHEKFGDYGRQKHVTNYTVVVDGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN
complement(146043..146924)         PHAGE_Salmon_SEN34_NC_028699: methyl-directed repair DNA adenine methylase; GQS42_RS10000; phage(gi966201453)     0.0                 SalmonellaentericasubspentericaserovarTyphiMRYGSVCSGTAAMPIEEPALRTWRRPFLKWAGGKYSLLPELDRLIPAGKRLIEPFVGGGSVFLNSDKHERFLLADVNADLINLYQMLAVVPDSVIAEAMKAFRHLNDAENYTVIREAFNAQKLNATERAAAFLYLNRHCFNGLMRYNLDGFFNVGWGKYKAPYFPEEEIRAFRQKSHACVFMTAGFERTLRLAGDGDVVYCDPPYEPMPGTAGFTNYASGGFSWDSQVALAESCVAAHQRGAKVFISNSTAPRVIELYERHGFTLHRVNARRSISSKGSTRETANDIVASLGI
complement(146921..147985)         PHAGE_Salmon_SPN1S_NC_016761: putative bacteriophage protein; GQS42_RS10005; phage(gi374531224)     0.0                 SalmonellaentericasubspentericaserovarTyphiMSKIGDYFFEFPASRGLQGNTVVLMMTVPARALTRVLASDNHGNTLERSQRELNPARAKKFYEYLRTAYEKKEPFIIPPLVGNCDSFIEFEEFGNTNVGVARFPMDAEIKLFDGQHRAAGIAEFCRTYGEPIHIPMMLTHQLPLKTRQQFFSDINNNVSKPSAAINMAYNGRDKIAQDMVSFLSSHAMFSEITDFEHNVVPAKSDLWISFKPLSDATAKFSGNGDELATSDIYDIWEAWLKLTAIKGIRHGCTPVEYKRDYIQFHAVMINAFGYAMQELLRHRPAHIIVQMIEELVNNSTMSELENFFLISSWSGVCASTEKDRATVIASVASQKAASVRLIQAITTKSFEVAA
complement(148063..148743)         PHAGE_Salmon_SEN34_NC_028699: exonuclease; GQS42_RS10010; phage(gi966201454)         3.05e-167           SalmonellaentericasubspentericaserovarTyphiMTPEIILARTGIDVSNIEQGDDAWHRLRLGVITASEVHNVISRPKSGKKWTDMKMSYFLTLLAEVCTGVAPEVNARALAWGKQYEDDARTLFEFTTDVKVTGSPILFRDEDMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGIDAWYFANYDPRMKREGIHHVVVERDDKYMSLFNEMVPEFIEKMDEALKEIGFTFGEQWR
complement(148740..149525)         PHAGE_Salmon_SEN34_NC_028699: recombinational DNA repair protein RecT (prophage associated); GQS42_RS10015; phage(gi966201455)     0.0                 SalmonellaentericasubspentericaserovarTyphiMSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTRDGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTTYTTDRQPERDITPVSDETMREINDLLITLNKTWDDDLLPLCSQIFRRDIGASSDLTQIEAVKALGFLKQKAAEQKVEA
complement(149531..149827)         PHAGE_Salmon_SEN34_NC_028699: host-nuclease inhibitor Gamma; GQS42_RS10020; phage(gi966201456)     2.14e-65            SalmonellaentericasubspentericaserovarTyphiMNAYLTYDRIEAQDWTRHYQQIAREEKESELADDLEKGLSLHMLESLCMDELPRHGANKKAISRAFDDDVEFQERASEFVRYMAETFSRHQIDIESEE
complement(149918..150118)         PHAGE_Escher_HK639_NC_016158: hypothetical protein; GQS42_RS10025; phage(gi356870641)     1.68e-18            SalmonellaentericasubspentericaserovarTyphiMTNYGTTTLPRTSVVPGMLVKYQGRTYRASANVGKGLYLFTLFERLRTTNDEIEVYLNQHGKPATH
complement(150407..150811)         PHAGE_Phage_Gifsy_2_NC_010393: putative bacteriophage regulatory protein; repressor; Lambda gpCI analog; GQS42_RS10030; phage(gi169257276)     2.39e-18            SalmonellaentericasubspentericaserovarTyphiMNFGERLQRVLNETGITQSELGRRVGATSQSVNGWCQSGILPRKDILELLPKATGKPLYWFFMEDDDESDVPERLTQGGPTDLNDRQKRLLEIFDQLPTVEQDRFIELAGTRLQELDDFMAEYQRRRKIEPPSR
150941..151177                     PHAGE_Phage_Gifsy_2_NC_010393: putative bacteriophage regulatory protein; Lambda gpCro analog; GQS42_RS10035; phage(gi169257277)     8.67e-17            SalmonellaentericasubspentericaserovarTyphiMKVTVQRKILSVCSQAGLGRRLGRRAQTVNGWFKNKVPGELVVRVARAIDWKVTPHELRPDLYPNPTDGLPSQEASAK
151143..151517                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage transcriptional activator; Lambda gpCII analog; GQS42_RS10040; phage(gi169257278)     6.23e-72            SalmonellaentericasubspentericaserovarTyphiMAYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
151602..152585                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; Lambda gpo homolog; GQS42_RS10045; phage(gi169257279)     0.0                 SalmonellaentericasubspentericaserovarTyphiMSMSNTAEIYKFPAPIPTQQECRMADLENGYLRLANQIQDALCIVELSGREFRVLNAIIRLTYGWSKKSDRIANSLIADKTTLKVKHVSEAVLSLAYRNIIILRRIGQTRYIGINTNLDKWAYSKPHCSKCPVSFPDDEIATWIISVPETRDSYTRKGGRASPKTGIVIPENRDSVLPHSAIPENGDSYPRKEGRASPKTGNTKDIIPKTNIKDLTPFNPPKGKVKFDPLSIPVPEWLNAASWNEWVTYRQQSGKPIKTELTVTKAFRLLKECLDEGHDPVNVINTSIANGYQGLFKPKFALNDRRAGRDVNHISAPDKTIPTGFRG
152588..153337                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; GQS42_RS10050; phage(gi169257280)     0.0                 SalmonellaentericasubspentericaserovarTyphiMKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRSEELDRMNQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGFASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYDGGQSEASLLDDLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGARVIDRLQMDGGMWVNFDWESYRKNVSHLRIVK
153348..153695                     PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS42_RS10055; phage(gi169257281)     5.91e-79            SalmonellaentericasubspentericaserovarTyphiMARPKTHSERMIILERIIGLVKEQGRITTNDVVAIFGVHRTTAEKYLRIALERGGFIRHGRCGIFRDQRAVIDYDLRRYSSSQVTGFSALPVLEKSPVMQVYGASKMSINKGGAQ
153692..154216                     PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; GQS42_RS10060; phage(gi169257282)     7.32e-44            SalmonellaentericasubspentericaserovarTyphiMSNIDKRALREVAERATPGNWRRTSSLFNGITVTPFSLCGEEVTLAHTVEKRDAEFIAAANPATMLALLDELETKEEQRANWFRMAQKLGEDLDTAERLIAELDQRLIEYAGIATREARRVAELEARKVNLSKLSVGEVMHMTGFSRDYAEGWCAGNDNAIHEIRTAGIKVKES
154216..154689                     PHAGE_Gordon_Nymphadora_NC_031061: capsid maturation protease; GQS42_RS10065; phage(gi100067)     1.02e-68            SalmonellaentericasubspentericaserovarTyphiMESQSILDMCCGSRMFWFNKRDERAVFADIRAEEHILCDGRRLVISPDLIADFRALPFADASFPVVVFDPPHLERVGQTAWMGKKYGRLNKKTWRSDLRAGFKEAFRVLRAHGVLIFKWNETQIPVSQILALTDVKPIIGQRTGKNDKTHWIIFVKD
154693..155265                     PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; GQS42_RS10070; phage(gi24371543)     7.39e-66            SalmonellaentericasubspentericaserovarTyphiMTTITKEWLQQTIAEFENTRDDIPFGLSDDDAKILIVLKRALASLEREQVRHEHADWSDATFGDVGPIGPLKHLSKEALETAAELGDLSEWADMQFLLWDAQRRAGITDEQIALAMVEKLAVNKKREWPEPKDGEPRLHIKEQPVPVVPEECPEEIRDLMASHSDALFNDDDAQEIWNACRAAMLNGGKS
156111..156290                     hypothetical protein; GQS42_RS10075                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMGHALKKADRLYIPPRDKSMVAKPRAAISKACSHTGQVKNAFEFGFARYEKAMEELSKV
156301..156798                     PHAGE_Staphy_SPbeta_like_NC_029119: Fic/DOC family protein; GQS42_RS10080; phage(gi985761206)     7.04e-10            SalmonellaentericasubspentericaserovarTyphiMAIEYVEGVNYLSIEDIVYINRSLIEIQTPNEPIGVLNPNNLSSSQSRPSTIRYYEQTDDMFRLSAVLIESLIQNHPFANANKRTAMMAGYVFLLLNGYELTAPSDEVVTIAEGLARKDYAVDDLENWLCHWSREYDSRTLCETGGNMIQALVATSRYIRIKSNE
156983..157222                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage damage-inducible protein DinI; GQS42_RS10085; phage(gi169257284)     3.26e-50            SalmonellaentericasubspentericaserovarTyphiMRIELVISRTKQLPEGAVPALEKELITRLQNQYENCNLTIRRGSQDGLSIVGAADGDKKRIQSILQETWESADDWFYAY
157278..157517                     PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; GQS42_RS10090; phage(gi423262436)     3.00e-53            SalmonellaentericasubspentericaserovarTyphiMLEDLPESGYAVIRCYDHCVVARFGSIPDSGRALMYRRGDEISFVPLHPDDIVGTPTLFTQMLEKAGYRITRCFDTLQM
157557..158159                     PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS42_RS10095; phage(gi169257286)     5.23e-146           SalmonellaentericasubspentericaserovarTyphiMAHELQLIKQSSGILIPATPETSDILQSKIKLGAVLVAEFRQVRNPAFHRRFFALLNLGFEYWEPTGGAISANERKLVNGYAKFLAAYGGNESALLDAAEQYLEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEVEFQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSFAG
158368..158979                     PHAGE_Phage_Gifsy_2_NC_010393: NinG; GQS42_RS10100; phage(gi169257288)               5.36e-145           SalmonellaentericasubspentericaserovarTyphiMAKLPRRKCANKECRQWFHPIREGQIVCSYQCASTVGKEQTRKAREAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLGCISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVCNVYKSGNIEAYRAALVERYGEAAVLALENNNTPHRWTVEELKEIRLAALSDLRALKKLEAA
158976..159122                     PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS42_RS10105; phage(gi169257289)     1.76e-26            SalmonellaentericasubspentericaserovarTyphiMKPELIEILRMRWLRLRIYRYRGSFPVAYRILRNYVRIEAKREHRNES
159112..159909                     PHAGE_Phage_Gifsy_2_NC_010393: prophage antitermination protein; late gene regulator; Lamba gpQ homolog; GQS42_RS10110; phage(gi169257290)     0.0                 SalmonellaentericasubspentericaserovarTyphiMNLESLPKYFSPKSMMPGAVPCGITSDTLTITDVMASLGLLTAKAAVGIELYLAKAGVLSSENIIAYIRQLAEQRAERHGALRKMEKGKRSKFLDTMARYVFRDYSLSAASLVTCSSCHGAKLIDAEVFTNKVTYPDGKPPKWVKDTKGISPSDWEVWKSVREQVRVVCKACDGKGQVKNECRCRGRGEILDKKKSELQGVPVYKKCPRCKGRGYPRLKDTEIFKALGVTEMVWRYNYKLFFDRLVEHCHIEESYAEKVLGNVTR
159981..159992                     attR                                                                                 N/A                 TGTGACGTTACA
160308..160433                     PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS42_RS10115; phage(gi169257292)     1.23e-22            SalmonellaentericasubspentericaserovarTyphiMKMHNDPHSMDSQSIFAGSQLLPMEKTSHLALSVGFRSHLA
complement(160569..161018)         PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; GQS42_RS10120; phage(gi169257293)     2.54e-106           SalmonellaentericasubspentericaserovarTyphiMKNTALGKFIFIVGTALLLGGCSGMVMPPYATHGTSVGIIAPAGGYSEWHTDSRNHTTGDSHSQSQGNCTQSEDSQLSENGLTRTHQSNCNTRSQTHSSSTSKTRSSSVGFSVGGPVGASIGLIKQMESMNRAPANDMSSNEMFKNFGF
