gi|00000000|ref|NZ_WSUQ01000053.1|  Salmonella enterica subsp. enterica serovar Typhi strain PHL3183 22124, gc%: 50.62%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
649..660                           attL                                                                                 N/A                 TCAACATAGCGC
863..1783                          PROPHAGE_Salmon_LT2: integrase; GQS45_RS22390; phage(gi16766072)                     1.37e-78            SalmonellaentericasubspentericaserovarTyphiMAGKTARSKVEKFRRDFVTLARDAGRAYATAADSMRIAKYFLNYLRDNGIKLRHTDSIKTRHVTGYLQFRKSQGISVRTIQNERAAIRGVLNKAGRYKLADPNNPLLSNKALGLEKSSRSGTKLPLSPEEFQKAFKEVEKSNRGVAATMLLSYTLGLRTKEAVESCKSVMTWKRALESGEHSVRVIFGTKGGRGRNTLIVDKDALRHAINYAEKVMKENNGKLIDRPDIRKAIDTYRYHVRRAGLTGEKAPHSMRYHFSQEAREYYEKNGFSGKEIYAQVSMDLGHGDGRGRYVKQVYFRDGTEDE
2507..2809                         hypothetical protein; GQS45_RS22395                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMNIFLTSLVSILRKALPRIRHGKSEWIANHTGYLRFQAEVWLDDNDHFHAVVNKRSGWMNPRYEQVVDCGKFDSFHCAMNTAYSQALELAHLRYAWELTD
2905..3285                         hypothetical protein; GQS45_RS22400                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMNVYQLKNRTDVLIWLSLIEGDLLSIQASLNAGLYPLYDDRQEEPEFECAVFNCGMAFGEFMERLESEDIDVLTTAGHELTGSIEHMGRMLCEPVWTQAVLLGRNEARADRAICAAEADGWLYDPA
3656..3865                         hypothetical protein; GQS45_RS22405                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMSHIHLPSVCEKTGNTLTPEQENRVRHLVHEECYSRDRAALIKLIGLMLLLKLAGTLMLAMLLLVLRLF
3883..4335                         hypothetical protein; GQS45_RS22410                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMMLTTRLFVFLLHHLWRVMRWTGLTVYHGISVLYRRRQARLQASDWRPRTVYTGRWQLADDGQFCGRAVVLRLRDALKPGVELLYFGEEAAEPYYSERQFVDDRESVMVAEQMLLRFLGSRHRRQNRRNAPVSVLVTDVVTTAPVNDEAA
4332..4628                         hypothetical protein; GQS45_RS22415                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMMDIMALLSSTPPAVAIEEPVWEQLVKYPQAPDCENERLQRLIYHGFQALSQAPSGQGIVEFGYFCLPPDGDLHAPLWQNVCIKREYSDGQVTLTFDR
4706..5164                         hypothetical protein; GQS45_RS22420                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMSVMTTNETPASTVAEPEVFRRTRNRFNQWLQAEFDRHYHTMRDGGYRSFLKKNHPTELLRYDEACEALRREEFARFAELQTLGLYLHLQVQQKEAQFRRRRNRLLLGMTLTGVVTSVLLYGHFHPEQFLLIGQELATLPGRILGFVGRLVP
5253..7202                         PHAGE_Faecal_FP_Taranis_NC_047914: hypothetical protein; GQS45_RS22425; phage(gi100023)     3.99e-39            SalmonellaentericasubspentericaserovarTyphiMNTSLHPDDISRFISGRLISSLAAGQVPWRGTIPGLPEHALTGVPFTGINVLLLWQAMQQRSLRSGRWLTGDDLRQLGGQVRSGEKPVTLVRYRPSLSLFKVINPEQCDGLPDTLQPGWPLPPRPQPSLNVIRDLLQNSGVPVIHRDNVLPVYRALHDRIELPPVASYVGEETYWQDILNLLVQATGHPQRLHRFGLTVDTRTDEVHEALVAELGAAFLSAALGLPGAMLSRLDVAPWVTYLQGDPWRLFRAAEAARKAMMWLKERRPSMTTVEMWQKMASLILETHYGFSLDDTTLGCRSVVERHIECGITPLMAINALARIYQWERYDQPQRSLFINEAGPDSEILTLSEIRPELLTCYRVPVPSGIPDRKAEAVQVESLPLLLAPAVSEGKSAANDDGPDDPDGNDNVVALPWAARRGKENPHIHRFVSIFNGIAPHESRWQVFSDFVHMAACSLYNAVHRDPDFEADYMRRVSHYSAEDANNMARLLSEVVMGLEFSPTDFLGRIYMISGLGNFHNAQYFTPYSVSYAMARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFNPQKQMVAYCVDIDPVASMMCYIQLSLMGIPAIVATGNSLTVEIKREMATPMFVLGRWHHRWQADRTRKAA
7274..8182                         hypothetical protein; GQS45_RS22430                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMLASFYIQRQLSKALGLSVNAEEVFYQVDDRESDYVNTDMVLNRDRLLSVMQFMLDDVALNPELRERCRQAERILTLWIRGLDALATVSEDMSILPRTITECSGRVDRLLPGDPQALLALPDDAFLRLTAQCHLMSGEQFPREQLAATMPYWTRFMAWIARELYQVEDRCLVQLGRLYRRLHVEPRKIRCFNLAFGRIELHMSGRDIDECQYLYAYDDASLEDYLEEIMAGNLTPVRFEVRVIYRNDSELNVFRRDADVIDVEHPHVSDWQNVVSEALDWLRQERTSLVEIPLTRPALKLAA
8301..9155                         hypothetical protein; GQS45_RS22435                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMCLDVTEEDITWQLRGSRSDYVNTRIQFDREKLMAVMDVMLSGLDSDETTLARCRQVLTLWIAGLDMLLKEAEQPDWLPRVHPHSSGQCDLLLKGNPAALTEADEETYLRVTGQQDLPAHRRIPQVIFSKTVRYWHRFESWLAQQLQDITQHCYQKLKCFVANCTTEPRQLREFRGEYGSLRLFVGPQDIDEIDILEFNPEYIVSWVDKVADGLFTPVCFVVNVYYKNGILLESFTWDSEVDNINRMTSSDYGEAMSQAISWVREQFEQPVIDQPVPQQPRLAA
9230..9556                         DUF3085 domain-containing protein; GQS45_RS22440                                     N/A                 SalmonellaentericasubspentericaserovarTyphiMLKFSAKDLKPVLLEARKNHCGVVLVKDHGVYIMSETGELTPRGRKVAYAKGCHPEKDEAWWDTARAEVGGDDFGETINLTKSMINRILNERKPLYITASNEEFKIEC
complement(9656..9925)             hypothetical protein; GQS45_RS22445                                                  N/A                 SalmonellaentericasubspentericaserovarTyphiMRINVLLLTSLLVAGPALAGEAHVCKSQTVANSAANAELTDNTVFKCGESISGTIPSLAREGWKIVQQTDQADVTDPSKTYAQLIIQKD
complement(10057..11331)           PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; GQS45_RS22450; phage(gi431811050)     0.0                 SalmonellaentericasubspentericaserovarTyphiMFALADVNSFYASCEKVFRPDLRNTPVVVLSNNDGCVIARSKEAKQLGIKMGVPWFQLKTTEFPVPVVAFSSNYELYASMSNRVMAHLEELAPRVEQYSIDEMFLDVRNIDSCIDFEDFGRQLREHVHSGTGLTIGVGMGPTKTLAKSAQWASKEWRQFEGVLALTSGNPKRTEKLLSLQPVDEIWGVGRRISKKLHTMGITTALQLARANPTFIRKNFSVVLERTVRELNGESCISLEEAPPPKQQIVCSRSFGERVTTYEAMRQAVCQYAERAAEKLRGERQFCRHVAVFVKTSPFAVNEPYYGNVASEKLTTPTQDTRDIIAAAVKALDRIWVKGHRYAKAGCMLNDFTPTGISQLNLFDEVQPHERSEQLMKVLDSINHSGMGKVWFAGRGIAPEWQMKRELLSPAYTTRWAELPVARLR
complement(11331..11417)           peptidase; GQS45_RS22455                                                             N/A                 SalmonellaentericasubspentericaserovarTyphiPAYPVLYPEELQIFGVVIAFVHKTRSKD
11551..11928                       PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: hypothetical protein; GQS45_RS22460; phage(gi100007)     9.26e-64            SalmonellaentericasubspentericaserovarTyphiMNKPLIALLLITSFSASADKIPSSIQNLIAVYDTRTHSLEDGGLTIRYNKRLLLVDAAESMFQGICNDYYMNKWKPGTIKRITLLNVTSDQGFEINAGGDECRKAGTMKDEQARTYRTSFIKPLQ
complement(12015..12233)           PHAGE_Escher_500465_1_NC_049342: hypothetical protein; GQS45_RS22465; phage(gi100043)     7.78e-43            SalmonellaentericasubspentericaserovarTyphiMMNCPKCGHSAHTRSSFQVTDSTKERYCQCQNINCGSTFVTHETVVRFIVTPALVNNAPPHPTVSGQGHMNF
complement(12301..13374)           PHAGE_Salmon_Fels_2_NC_010463: tail protein; GQS45_RS22470; phage(gi169936019)       0.0                 SalmonellaentericasubspentericaserovarTyphiMNSRSPAFSITIEGKDVTTALDARLMSLTLTDNRGFEADQLDLELDDADGQIVLPRRGAVIQLALGWKGQPLFPKGAFTVDEIEHSGAPDRLTIRARSADFRETLNTRREKSWHQTTVGEVVKEIAARHNLKVALGKDLTDKVLDHMDQTNESDASFLMKLARQYGAIASVKDGNLLFIRQGQGRTASGKPLPVITITRKAGDGHRFTLADRGAYTGVIASWLHTREPKKKETTQVKRRHKKVATPKEPEAKQGDYLVGTDENVLVLNRTYANRGNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPIDDAEWTITTLTHTVSPDNGFTTSLELEVKIDDLEIE
complement(13398..13883)           PHAGE_Salmon_Fels_2_NC_010463: P2 gpU-like tail protein; GQS45_RS22475; phage(gi169936020)     8.78e-109           SalmonellaentericasubspentericaserovarTyphiMMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLGPDNDPLTLSGVLLPEVTGGRLSLLALEQMAELGKAWPLIEGSGTIYGMFVIESLSQTKTEFFESGMSRRIEFTLTLKRVDESLSDMFGSLSDQLSNLQDSATSAIGNIKNTVGGLLQ
complement(13883..16663)           PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: hypothetical protein; GQS45_RS22480; phage(gi100011)     0.0                 SalmonellaentericasubspentericaserovarTyphiMSDNNLRLQVVLGAVDKLTRPFKNAQAGSKELASAIRQTRDQIKKLSDAGGQLKSFDQLTQSVSRTGAELDQARLRAQMMTREMSSLESPTKKQTQALEAQWRAVSRLEQKQQQETRQMAAARAELYRLGLSAGGGARETARIARETERYNRQLAEQERRLREVGERQRKLNAIKAKAEKTRELRNSLAGNGAGAMAAGVTTGMTLLAPVKAYSESENAANQLAGSMMGPGGKVAPEFEKINRLAVALGDKLPGTTADFQNMMTMLRRQGMSAQVILGGLGESAAYLGVQLQMAPTAAAEFAAKLQDATQTSEKDMMNLMDVIQKGFYAGVDSGNMLQGFSKISSAMNIINKKGLEAVKTFAPLLVMADQGSMAGESAGNAYRKIFQAALDADNIKAVNDDLKEKGAGIKFNFSDGKGGFGGLENMYAQLEKLKKLNPETQMATMKDLFGNDAETLQALNIMLSKGIEGYRETAAKLENQASLRERVDASLNTLGNKWEAATGTFTNAMASIGETVAPALKNLADWLGELASRLDGFVKRHPSLTSALFKMAAGFAVAATAVGAISLALASILGPMAIIRVSAGMLGLKFASVGGLVRAALGGLGKSVLWLGRLMFANPILAVIGLIAAGAIYIWQNWDTLGPKFKAMWDAVCNATGTAWDWIKEKASAAWEGIKSLFFNYTLPGLIAKNWDAIKSGVSEAWANIRQSISDKWNAILADVSALPAKFQDTGSAIIDSILDGINAKWETLKSKLSSVTDYLPDWMTENNKTQDKAQVQVVGGAAAAAVPFAGMYDSGGIIPRGQFGIVGENGPEIVNGPAKVTSRRRTAALASIVAGVMGVAAAPAEAAPLHPYSLPTAAYKQSQPAKSASAPPVMHFETHAPITIYAQPGQSAQDIAREVARQLDERERKTRAKARSNFSDQGGYE
complement(16656..16778)           PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like protein; GQS45_RS22485; phage(gi169936022)     6.78e-20            SalmonellaentericasubspentericaserovarTyphiMVADIATIFHWSPSITDVMPLTDVLEWRHKAIQRSGASDE
complement(16790..17092)           PHAGE_Salmon_Fels_2_NC_010463: P2 gpE-like tail protein; GQS45_RS22490; phage(gi169936023)     6.06e-60            SalmonellaentericasubspentericaserovarTyphiMSDKLTEKTVKLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAIMDMDVGAMMTVIPRISSPTLTAQEMAELDPADLTAMAVEVVTFLLPKSVLADLPTT
complement(17147..17662)           PHAGE_Salmon_Fels_2_NC_010463: major tail tube protein; GQS45_RS22495; phage(gi169936024)     5.34e-121           SalmonellaentericasubspentericaserovarTyphiMALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKFEKYRGGGMPGAVDVDMGLDDGALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAVELVVRGRHKEVDSGEWKTGESSSTKVSSTNSYAKLTINGEVLYEVDLVNMVEIVGGVDLMEEHRNALGL
complement(17672..18844)           PHAGE_Salmon_Fels_2_NC_010463: major tail sheath protein; GQS45_RS22500; phage(gi169936025)     0.0                 SalmonellaentericasubspentericaserovarTyphiMAQDYHHGVRVVEINEGTRPITTVSTAIVGMVCTGDDADASVFPINKPVLLTDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVAQGETEAETTSNIIGGVTSDGKKTGMKALLSAQSQLGVKPRILGVPGHDTQAVATELLGVAQSLRGFAYLAANGCKTVEEAIAYRENFSQREGMLIWPDFINFDTVLKADATAYASARALGLRAKIDEQIGWHKTLSNVGVNGVTGISADVFWDLQDPATDAGLLNKNDVTTLIRKDGFRFWGSRCLSDDPLFAFENYTRTAQVLADTMAEAHMWAVDGVLNPSLARDIIEGLRAKMRSLVNQGYLIGGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDRYLVDFASRVAA
complement(18947..19165)           PHAGE_Salmon_Fels_2_NC_010463: DNA-invertase; GQS45_RS22505; phage(gi169936026)      2.11e-39            SalmonellaentericasubspentericaserovarTyphiMECELIVERTSAGLEVVRSKGRIGGRRPKLTPEQWEQAGRLLAAGETRHRVGLLFDVSISTLYKKFPVNQSR
19379..20101                       SPI-1 type III secretion system guanine nucleotide exchange factor SopE; GQS45_RS22510     N/A                 SalmonellaentericasubspentericaserovarTyphiVTKITLSPQNFRIQKQETTLLKEKSTEKNSLAKSILAVKNHFIELRSKLSERFISHKNTESSATHFHRGSASEGRAVLTNKVVKDFMLQTLNDIDIRGSASKDPAYASQTREAILSAVYSKNKDQCCNLLISKGINIAPFLQEIGEAAKNAGLPGTTKNDVFTPSGAGANPFITPLISSANSKYPRMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANKYIQYTP
19782..19793                       attR                                                                                 N/A                 TCAACATAGCGC
complement(20299..20706)           PHAGE_Salmon_Fels_2_NC_010463: P2 gpG-like protein; GQS45_RS22515; phage(gi169936028)     3.06e-83            SalmonellaentericasubspentericaserovarTyphiMSEYYYSFKEKGFFWQPDTESDNYPDDLIPLTDEYYRELMQGQVDGKYIEHRKGGPVLVEHREYTPEELVAQAEARKAELLAEAESVIAPLARAVKLKIATDEEIKRLEAWELYSVMVNRVDTANPDWPEKPAQI
complement(20713..22124)           PHAGE_Salmon_Fels_2_NC_010463: P2 gpH-like protein; GQS45_RS22520; phage(gi169936030)     1.64e-149           SalmonellaentericasubspentericaserovarTyphiSQIIAEQVIPETEGGWWIREVGLFDETGALIAVGNCPESYKPQLTEGSGRTQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELKVYVDDLMAKHLAAPDPHSQYAQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAAMVDSAPAALDTLNELAAALGNDPNFATTMLNALGGKQPLDNTLTNLSGKDVAGLLAYFGLGETINRAADALQKSQNGADIPDKPRFVQNIGLKETLNPTKRVSIGNIGTGVFDGSTPCINIGDSDSGFIGSADGVLDIYCNGAKVGYINGNGLHMLTDIHFDNASMTTNGDIFSSVWGDNWLSIWITNQLNTRGTIDWINSELAIRDNNINTRATIDYVNQTFARKNTGSIQDWGWILDDSTGFIMQWGTLGNSNGTYNFPRAFPVGCFAVFVTNTNAQGTQVDNAFGYPVSNSQFFAATKSSGMANLVNNFPVAWFAIGR
