Submission Results

Sequence Name: Not Available

GenBank Accession Number: 1844776120 open_in_new

GenInfo (GI) Number: 0000000000 open_in_new

Download Results: 1844776120.PHASTER.zip

gi|00000000|ref|NZ_SWKA01000005.1| Escherichia coli O157:H7 strain G5101 unitig_0, whole genome 5289467, gc%: 50.58%

Download summary as .txt file: summary.txt file_download

Total: 26 prophage regions have been identified, of which 14 regions are intact, 6 regions are incomplete, and 6 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
196.3Kbintact1501321-96357 info_outlinePHAGE_Entero_YYZ_2008_NC_011356(31)52.32%Show info_outline
257Kbintact1506896453-153547 info_outlinePHAGE_Entero_DE3_NC_042057(20)49.95%Show info_outline
345.6Kbintact15065159218-204871 info_outlinePHAGE_Entero_BP_4795_NC_004813(21)50.63%Show info_outline
459.3Kbintact15074386425-445812 info_outlinePHAGE_Entero_cdtI_NC_009514(11)50.95%Show info_outline
544Kbquestionable8036660458-704477 info_outlinePHAGE_Entero_HK629_NC_019711(24)50.45%Show info_outline
610.9Kbincomplete5018710075-721053 info_outlinePHAGE_Entero_HK225_NC_019717(2)49.23%Show info_outline
722.7Kbincomplete5014733741-756537 info_outlinePHAGE_Entero_YYZ_2008_NC_011356(4)49.67%Show info_outline
89.1Kbincomplete4015819143-828308 info_outlinePHAGE_Stx2_c_Stx2a_F451_NC_049924(3)48.39%Show info_outline
921.5Kbintact14024858142-879677 info_outlinePHAGE_Escher_SH2026Stx1_NC_049919(4)52.24%Show info_outline
1018.5Kbquestionable7014889236-907741 info_outlinePHAGE_Stx2_c_1717_NC_011357(4)43.45%Show info_outline
1128Kbintact120321006527-1034600 info_outlinePHAGE_Entero_DE3_NC_042057(12)54.15%Show info_outline
1238.6Kbincomplete60281026232-1064874 info_outlinePHAGE_Shigel_Stx_NC_029120(6)48.36%Show info_outline
1326.2Kbintact120451284526-1310790 info_outlinePHAGE_Entero_SfI_NC_027339(9)45.74%Show info_outline
1432Kbquestionable80151875969-1908015 info_outlinePHAGE_Entero_P4_NC_001609(6)48.93%Show info_outline
1540.7Kbintact150472579912-2620674 info_outlinePHAGE_Entero_YYZ_2008_NC_011356(27)52.59%Show info_outline
169.2Kbquestionable70103125874-3135074 info_outlinePHAGE_Stx2_c_1717_NC_011357(3)52.80%Show info_outline
176.5Kbquestionable7083814183-3820719 info_outlinePHAGE_Stx2_c_Stx2a_F451_NC_049924(2)52.12%Show info_outline
1810.2Kbquestionable7093823963-3834190 info_outlinePHAGE_Stx2_c_1717_NC_011357(3)47.52%Show info_outline
1957.4Kbintact150674190685-4248121 info_outlinePHAGE_Entero_YYZ_2008_NC_011356(30)49.20%Show info_outline
2015Kbincomplete40114525193-4540255 info_outlinePHAGE_Shigel_Sf6_NC_005344(4)45.27%Show info_outline
2161.7Kbintact150724783165-4844882 info_outlinePHAGE_Entero_BP_4795_NC_004813(31)51.58%Show info_outline
2256.1Kbintact150764985529-5041660 info_outlinePHAGE_Stx2_c_1717_NC_011357(48)51.30%Show info_outline
236.3Kbincomplete10125044347-5050697 info_outlinePHAGE_Pectob_CBB_NC_041878(2)51.28%Show info_outline
2444.6Kbintact130565091043-5135685 info_outlinePHAGE_Entero_DE3_NC_042057(13)51.96%Show info_outline
2537.3Kbintact150505191860-5229194 info_outlinePHAGE_Entero_P88_NC_026014(32)50.89%Show info_outline
2634.1Kbintact100345255282-5289467 info_outlinePHAGE_Entero_BP_4795_NC_004813(9)48.86%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.