gi|00000000|ref|NZ_AE001272.1|  Lactococcus lactis strain DPC3147 plasmid pMRC01, complete 60232, gc%: 30.11%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
27938..27949                       attL                                                                                 N/A                 TTTTAATTAATT
complement(42657..43337)           PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; HS157_RS00215; phage(gi985761246)     3.15e-89            LactococcuslactisMNYFKGKQFQKDVIIVAVGYYLRYNLSYREIQELLYDRGINVCHTTIYRWVQEYSKVLYHLWKKKNRQSFYSWKMDETYIKIKGRWHYLYRAIDADGLTLDIWLRKKRDTQAAYAFLKRLHKQFGQPRVIVTDKAPSIGSAFRKLQSNGLYTKTEHRTVKYLNNLIEQDHRPIKRRNKFYRSLRTASTTIKGMETIRGIYKKNRRNGTLFGFSVSTEIKVLMGILA
43487..43498                       attR                                                                                 N/A                 TTTTAATTAATT
complement(43584..43886)           hypothetical protein; HS157_RS00220                                                  N/A                 LactococcuslactisMGNLLELLLVVAIIAFQTFCGYIGNKYLGMVLPLTFIGFVLFFLSQGALGFNFKDIIMPFFGPLILAFIYDGGKQTRKKKIKKELDKMKAKDITQNKKDI
complement(43879..44154)           DUF2089 family protein; HS157_RS00225                                                N/A                 LactococcuslactisMNWFLDLEEEEQEFLKRFILASGSLKQLAKDYEVSYPTVRIRVDKIIEKIKLKNYNQDSFKVKLMQMVIDEKVSLDSAKEIIREYEDSING
44411..44728                       PadR family transcriptional regulator; HS157_RS00230                                 N/A                 LactococcuslactisMLKGILQGCLLILINQRPYYGYAISQELSKYGFADIPKGTIYPLLTSMEKKGLILGKIEPSKEGPQRKYYYITDTGKQARKVFLTKWNILSLSVNDLINERRSDL
44725..45552                       hypothetical protein; HS157_RS00235                                                  N/A                 LactococcuslactisMNSDKLINENNQLRENLNSENKRYYEDLLVYIRSKSTFNREKDVEQLLLDMLHDLIDAQSNGESAEFYFGRDPKSLADEILKTLPKHFFDIFKIAWYIVIGYVLFFTIPNMVDPSRKLDLGNLIIFGILGFIFSITAFWLIGKETYQTNKIKKYTSYAFGIVIFVSLIIGSIFLKTPLSFRIPGWWGIGIILILLVITTIIFIIERKRMPFLITIYVLIIIDAILGIGSRIPILDDLLTQPISKSTALWVIIIGGPIVAIVCGVGTYYYIMRNED
complement(45907..47127)           MFS transporter; HS157_RS00240                                                       N/A                 LactococcuslactisMNLLRKNKTFASLLSSSIFSMLGTSLFNIVFLIYASSMPHPKMMISLAELCLLLPIIFAAYTGFLADRTKNKANFMIRASWIQAVLFFLLIFLMMEKNWISFWSIAGVKILTDLITSYKSGLRAPILQNNLSAEEIQPAFGQIQGLSSIIEIIGQPLGVTILALSHQSFSLVVLINGILYLLSGFFLLIFRKKLTFKTVNFDEKFKFNIKESFSQIRDVFTVNSSSNFLVLVFSLVFINFILAGIGPLTSLAMLKFNPFSVNYGIAIMIFNVVLMLGMLAGSFIMGDKLKDWELPKLMIATFLMIALFAALVTHFGLISLIFLFSLAYISAKASPKVNRLILENVSSENLGKIGGGITTIFTFSVPFGGAIFVFFANLIGIALTFYIISILSLLVFLILLLIIFRQ
complement(47124..48968)           hypothetical protein; HS157_RS00245                                                  N/A                 LactococcuslactisMEKFTYFTTERYKLPKYGFKIHVSATVESYEKVFDLTKRYLLKQKLYYKYLSTREDFIKNISKTEFPAESGKLFTIYPENIKAAEKILEDLSEILVKFDRVYILSDRNFHSSKTVFYRFGFFQNIDGCTLVRNGKIWKDFQKTYFDLPAWLVDPFYQEKKELNEKNRLNDLDLTKIIRQNNGGNIYFGTLKNQKIIVKESRANILTFVNLKSEELRKNEFLMSEFLNSANFSQPIEKFRAWINHYYVYKFIDGQTLREFQSNFSLFDNLTVDKLVIFSTIIQQLIEILEEAHHKNVILDDIHPDNFLIDKANKIHFIDLEFAHKFDESRKVTAKTEGFYLKSWSKLTEMKKDLRKVGQLILFLVGQLNVFNQQERSLEETIILAAKIFERFEVKTNISELLTYLFTGSSTKKALEISKKLYFYKSDVFLHISKEYLEEPKNLVTFIKENKFENLGLNGLTGYLWKLSIFKKNKLIDEKIEYLLSQLSDSFLHLSENSYSPYLLNGSSGLALFLLTYNFEKYEKQIIKIANGMDVKFSKSMDFEKGLSGIAYFLLMVYQKTGNKKYLSWADEQLRTCKLFIKNKKLYNFYTKSYEEGFLKGYEGYKFIKELRRKL
complement(49203..50042)           Rgg/GadR/MutR family transcriptional regulator; HS157_RS00250                        N/A                 LactococcuslactisMKTEIGKVFRELRQEKEMSLAKASEGVLSISQLSHFECGKGDLTIGKFFALIGNINVSINEFSDLLKKDETTLLLEQAGKLEQAGKIDELANLYEQERKKYRETSKKQDQLNIIALKSMLINYGKFERLTIIEQEILENYFYEIKKWKYSNLQFFAIALTQLDSQSIVFYLDNILEQDNLDNNLILMILRNAIYILAQNNQTEKVKFYLEKFKSLIPQIGNIEIGISYAVQEADLYEVSGNFREAISILEQIAKTYEEFYMPEKAKLYQEEIKKLQQKL
complement(50154..51011)           PHAGE_Xantho_vB_XveM_DIBBI_NC_017981: putative AraC family transcriptional regulator; HS157_RS00255; phage(gi389060447)     4.95e-06            LactococcuslactisMNEFSAIINYIEEHLEDNIDMKKIEQLARVSEYNFQKIFSVLSGLTLGDYIRKRRLSKSLYDLRETDEKIIDIAFKYGYSSSESYSRSFQQLFNISPSKARKEQHELTIFPKLSIRVQIKGGIQMNYLITNKPEMMITGIKESYPNITVGQASIPKFWDRFNESDLFNQVINEKSEHSPNTILGICLPREGEAYDYFIGVYTDEKTTADKLETITLPASDWAVFKAVGKVPEAIHQTYQDIYESFFPSTTYTQKKAPDFESYPLDLNPMSENHITEIWIPIHKNN
51444..52910                       PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; HS157_RS00260; phage(gi431811050)     4.00e-07            LactococcuslactisMERLKLNQYFDYSLEPRRAILFQDVKSNYASIECVQRNLNPLTTSLCVMSRADHSKGLTLASSPTFKKVFGMKNVSRASDLPFLIETRKFNYPQWYRTHTDIHGQRTEPTLQYVAFIESWAKRTWIVPPQMQLYVDYKIEVTDILTNYTSIDEIHSYSIDESFLDITESLNFFYPEIKNRYEQMNRIALDLQREIRDKLGLYVTVGMGDNPLLAKLAMDNYAKHNDNMRALIRYEDVPNKLWTIPKMTDFWGIGKRTEKRLNKLGITSIKELANADPLLLKQNLGTIGLQHFFHANGIDESNVREKYIPKTTSFSNSQILPRDYHKQREIELVIKEMAENLAIRLRKGGKLASNLSLYAGAASTSEYSSIKVSRNIEATQNTKELQDLAISLFRKKYLGGAIRQIGISGNQLSDSSVKQLSLFESVQENQTNKKQESLQKAIDEIRETFDFLSIQKASSLSEGSRVIYRNKLIGGHAASQDKEEKDVS
52900..53250                       PHAGE_Lactoc_PLgT_1_NC_031016: hypothetical protein; HS157_RS00265; phage(gi100003)     6.08e-16            LactococcuslactisMSVDRSYSPYEVIRMYHDRGMMKWGAFATGELTEAQNTFEKEKKEDKIIQALPHHLVLHLLNQSFSNQGQIKIQYQAKDKLTEVYGFVSEFINNQVRVKSTDKIYLISIEQIVNIS
53457..54109                       PHAGE_Entero_phi80_NC_021190: DNA invertase, resolvase, site-specific recombinase Pin; HS157_RS00270; phage(gi824479608)     2.24e-17            LactococcuslactisMKYGYARVSTIDQKLESQIEQLKNAGAEEIFQEKFTGTTNSRPAFINLLNTLESGDTLIITKLDRFARNTREALATIQELFDKDIKIPEFLVNFKRLDILSGIKSWLNNQLAIRVKIFIWEIIPQLENFLQFLVPLLNLKEILLAELKREKNIQEKITQTLKRVDPINLQKNKFNLMNNNKEHTKSNEKLELVFLLKKEDLIKFAG
54213..55010                       PHAGE_Clostr_phiCD6356_NC_015262: ParA-like protein; HS157_RS00275; phage(gi326536879)     7.39e-22            LactococcuslactisMKIITFTAIKGGVGKTTLTLNYSDWLVKKGKKVLLIDLDHQCNLTTIFQPTRRNNTIAEAFKDSEEAQEVIIDNIKENLDLVAGFIDLDELGSKLENNSNKEMLLFLWLKNNFEKLNIGSYDYILIDTHPDFSTITKNAVAISNYLVSPITPSEHGYSAKFDLEARLEKFRKSLFDYKTGETYVDAQLFFVANMIKHNTSTSHELLSHIKDDETVISTISEREIFNKATTKHLSIFDFAKTQDKKDDKVLNNINDSFSKIYNHTK
55024..55290                       hypothetical protein; HS157_RS00280                                                  N/A                 LactococcuslactisMSFDTFNKDKDEIVKQNLKETIDPEPKKEDEIHSVISSILKSNDMKSEKRKSVTFSLTESQIKKIEEQAQKHGFKTKSKLLAYLIDQM
55788..56168                       PHAGE_Strept_phiARI0004_NC_031920: membrane-associated initiation of head vertex; HS157_RS00285; phage(gi100034)     4.29e-07            LactococcuslactisMFIATDNQFTARGRLVDSPQINISEKTGNAIVSITLAQEHPFKKNEAGERESVFIKYTAIDTKNNPIASRIAEYVTKGSLVSLIGYHDSYFKENSEGKKEYFEVKRISTFRNEESKEKTLERRTKA
56194..57138                       toprim domain-containing protein; HS157_RS00290                                      N/A                 LactococcuslactisMEKHKVDFYNIPIVDYLLSIGEPLESVGHNYYQHKHHDSLKINQRKNYFVWNSRSSEKNSRGGVVQYMQIMHNLSLQETLSKLSEDLDGKVLPAIPKKSYPKKFNYKVKEAIVPIETQRYLVAKRKIPNKIVRLFFSYDLISQNENNEVIFKWFKGDKVVGFSKQGTIPLTDEEKEKYHTKRDFFKYVAPTTEADTMWGFNYLSGEPKHIFFFESEIDLLSYYSIFEEELNETGNFWLISINGVAIEKVYSFFRYGIENLNLKETCQSLHVCFDNDIAGKQACNKLQHLEFKNIPFQNDLPKEFKDWNEVLQNK
57810..58964                       PHAGE_Burkho_KS14_NC_015273: gp37; HS157_RS00295; phage(gi327198306)                 6.24e-05            LactococcuslactisMTIITEKAKNQKQVLTLNELEKRKVVENNALITSVAKMQKTALKMFELAVSCIDTENVPENNTVYLSKEELFSFFEVGSNSKHTQFKEAIEIMQKQAYFKIKSNKKLGIEYESIVPIPYVKWNDYNDEVTIQFSEHIMPYLINLKSEFTQYKISELQKLNSKYSIILYRWLTMNYNQYEHYSNKGGRREEQVEEYRNPQISIRELREMTDTVEEYQKMSHFTTWVLEKPLEEINDHTSFNVAYDKVKKGRSVDSIVFHITKKRRADDNSYKLEDKTNQEAKAEKEANEDRLYAKAMKSKYTKLLLENFLLSPYEMTDPAIMAGLQKNVYPKYDELKTLRGLEGVKKHLSYVREKQEPYSKGNIAKYLKKAIEQYLPTVKRQDID
