Submission Results
Sequence Name: Not Available
GenBank Accession Number: 188206270 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 188206270.PHASTER.zip
gi||ref|CAAZ01000388.1| Salmonella enterica subsp. enterica serovar Typhi str. E98-3139, 97068, gc%: 52.50%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8Kb | incomplete | 10 | 11 | 1064-9150 info_outline | PHAGE_Escher_RCS47_NC_042128(4) | 55.88% | Show info_outline |
Region DNA
>1 1064-9150 TCATGACCTCCCCTCCATATCATCTTGTCGAAAGCGTTCGATAATGTCATCGAAGCGTTT ATCGGCGACAAAACCTAACGCCAGCGCACGCTGGTTATCGATACGTCCCGGCCAGGAGGC GACAATTTTCTCGACGCCTTCGTCGCGCTGATGCGTAACCCGATCGCGCGCCGCCTGACC GCCCGCCTGACGCAACGTTTCCAGCATCTCGCCCACGGTTACGCTGATCCCGGGTAAGTT GATGCTGCTCGCCTCGCCAGGCGCGGGTAACGTTGCGGCCAGCGACAGGTTATGGATCAC CGTCGCCGGGCTGGAAATCCACAGCCGCAAACTTTCCGACACCGGACAGATGGTCGTCTC GCCCTGCAACGGTTCACGAATAATCGCGCTGACAAAAGAAGAAGCGGCGCGGTTTAGTTT ACCCGGGCGAACACAGATCGTCGGCAAACGCAGCGCCAGCCCATCCACATAGCCTTTGCG GGTATAGTCGTTGACCAACAGTTCACAGGCGGCCTTCTGCGCGCCATAAGACGAGCGCGG CGTGAGCGCGGTGGTATCGGTGACGCATTCCGGCAGCGTACCGCCATAAACGGCAAGCGA GCTGGAGAAGACAAAACGAATTTTCTGCGGTTGCCGACGACACGCCTCAAGTAACTGGCG GGTAAGATCCAGGTTAACTTTCCATCCCAGATCGAAATCGTCTTCCGCATGACTGCTGAC AATCGCAGCGAGATGATAAACAACAGAGGTATTAGCGGTAATCACATTCTCCAGTACGCC CGGCTGGGTTAAGTCAGCTTCCAGGCAGCGTAAACGAGGGGAATCTGATAACCGTGCAGG CATTTTTAAATCAACAAGAAGCAGTTCGTTAAACGCCAGCGATGAGTTTAATAAGGCGCT TGCGAGTTTCTGGCCTAAAAAGCCGCCCCCGCCGGTAATGATAATCTGCATCCGGATGTC CTCTTTATTGTTGTGTAGGGTAGTTCAGGGTTAGCGCCAGGCGTTAAACCAGCCAAGCCC CTCCTGAGTGGTATTCCGTGGTTGGTATTCGCAGCCTATCCAGCCGCAATAACCTACGTC ATCGAACAGCCGGAACAGCCACGGGTAGTTGATCTCGCCATCATCCGGTTCATGTCTGTC CGGTAGCGAGGCGATTTGTACATGGGCATAGCGGCCCGCGTACTCGCGAATCAGGTGACT CAAATTGCCATCCACTTTTTGCGCGTGGAAAGTGTCGAGCTGGATGAATACATTTGGGCG GTCAACCTCTTCTGCGATGCCCAGCGCCTGATATTGGCTGGAAAAGAGGTAGCCGGGTTT AACGCCGGGACTCAGCGCTTCGATCAAAATACGTTTATCGTGGGCGGCAAACCGGCCGGC GGCATAACGCAAATTATCGATAAACGTGGCGCGATAACGTGCGCCATCAGCGCCATCCGG CACGACGCCCGCCATGATGTGAACCTGCTCGCATTCCAGCGCCAGAGCGTATTCCAGAGC CAGATCAATATCGGCGCGCGCGTCGTGTTCGCGCCCCGGTAGCGCGGCACGTCCCCACTC GCCCGCCGCGGTATCACCCGCCGAAGTATTAAACAGCGCCAGCGTCAGATCATGACGCGA TAGCTGGGCTTTAATCTCGCTGGCGGCAAAGCCGTAGGGGAACAGAAACTCAACGGCCTG AAAACCGGCTTCGGCAGCAGCGGCAAAACGCTCGATAAACGGCACTTCGGTAAACATCAT CGACAAATCGGCGGCAAAACGCGGCATCGGGTTATCTCCTTAACTGCGCAATTTCTTCGG TGGTTAAATAACGAATCGGGCGTTCGCCAAGGATAAAAATCAGCTTTGCCGTCTCTTCCA GCTCCTCGGTATTATTAGCGGCTTCCTGCAAATTCTCCCCGCACACGACCGGCCCATGAT TAGCCAGTAAAAAGGCCTGATGCCGGGCCGCCAGCGCAGCCAAATCGCGAGCAATTCGGT CATCCCCCGGGCGATAGTAGGGAACCAGCGGAATGTCTCCCATCCGCATCACCACATAGG GGGTAAACGGGCGAATCACATTTTGCGGGTCCAGCCCTTCGAGACAGGAAAGCGCCGTTG ACCAGGTGCTGTGCAGATGTACCACGGCCTTGCAGCAAGGGTTATTGCGATACAACGCCA GATGAAAACGCACCTCTTTAGACGGTTTATCGCCGCTGAGCCATTCGCCTTGCGGGTCCA CTTTGGATAGCCGCTGCGGGTCGAGATTACCCAGACACGAACCGGTGGGCGTCGCCAGAA TATTGCCGTCCGGCAGTAACAGCGAGAGGTTGCCTGCCGAGCCGGTGGCATAGCCGCGCT GGAAAAACGAGGCGGCTATCCTGACCATCTCTTCTCGCAAAGCGTGCTCTTCTTTTGCCA GTATCGTCATACCTGAAACTCCCTTTGAGCGCGGATGAAAAAGGATTCATCGCCAAAATT ACCTGACTTTAGCGCCAGCGAGACTGGCGCATGGAGCGCGTTGACCCACGGCACGCCGGG TGAAATGCACGGTCCAATGTGGAAACCGGTAATACCGAGGCTTTGCGTCACCACGCCCGA GGTTTCGCCGCCCGCCACAATAAACCGGGTGATACCGCCTTCCGCTAAGCGAGCGGCCAG CAGGGAAAAGAGCGCCTCTACCGCATAGCTGGCTTCGGTAGCGCCATATTGCTGCTGGAT GGCAGCCAGCGCCTGCGTGGAGGCGGTGGCGCTAATCATTGGCGCCAGTTCGCTGTCCTG ACTGAACACCCACTGCGCCAGCGCTTCGGCGTAGGCCTCGCGCGCCTCGGATGACAGGCA GCGCGCCACGTCAACGTCGCGTGTGGGAGCATGTTGTCGATAGAAAGCCACCTGCTGATT CGTCATTTGCGAACAGGAACCGGAAAGCACTACCGCGCGACCGCTCAGCGGATAGCCTGC GGAACGGGCCTGAGAAACGCCGTGCTTCGCCCACTGACGCGCCAGCCCCATTGCCAGCCC GGAACCGCCGGTCACCAGCGGGGCATCACGCAAAACCTCGCCCTGGATTTCCAGGTGCCG CTCATTGAGCGCGTCAAGTACCGCGTAGCGATATCCTTCCTGCTGTAAACGCGACAGCGC CGCACGGGTCGCGGCAACGCCTTCATCAAGCGTCTGAGCCGGAATAACGCCGCAGCGCCC TTGCGCCTGCGCCCGGTGTATCGCTGATGCGATAAACGTTGCTGGCAACGGCGTCCAGCA CAGGCTTCAGGCGGGTAAACGCCGCCTCGCGCCCGGAGGCCATCACCGTCCGCCCTGCGC CGCTTTTACCGCGCCGCCGGAAACCGGCGCATCCAGCATGTTAAGATTCAATGCCGTCAA CGCCGCGGCGATCTCTTGCGCGTCGGCGCTTGAGATCGTAGACGAAACCATCACCGCGCT TCCGGGTTTCATCAGATGGGCGACGCCATCCTCACCGAATAACACCTGTCTGACCTGGGC GGCATTGACGACCAGAATGACTAACGCATCCACGACGCCGGCGAACTCCCTGGCGCTGGC GGCAGCCCCACAAGCCCCTTCAGCGAGCAGATTCGCGCACGCTTGCGGGTTAAGATCGGC CCCCCATGTGGAAAGCCCGGCGCGCAGGCATGAACGCGCAGCGCCCATTCCCATTGAGCC AAGCCCCACAATGCCGACATGAAAATCAGTTCCTGTTGTCATTATCACTCCATGTTAATT TACGTGATATTATGTTTTGTTATGTGAATATAGGCGTTTTTGTAAACAATTGCGGTGAGT TGTTTCACAAAAAATAACAAAATATGTTATTTTTTGTGAAGGCAATCCTCATAGAACTTC ACACGCTGTGACGAGAAATCGCGTAAAATCGCGACAGGACTAAAGAAAGGAGCAGACGTT GATACCTACTGAGCGTCGACAAATCATTCTTGATATGGTGGCGGAGAAAGGCATCGTCAG TATCGCTGAACTGACCGAGCGCATGCATGTATCCCACATGACTATCCGCCGTGATTTACA AAAACTGGAGCAGCAAGGCGCGGTAATCCAGGTCTCTGGCGGCGTGCAATCATCGACTCG CGTGGCGCACGAACCCTCGCATCAGATCAAAACCGAACTGGCGACGCCGCAGAAAGCGGC GATTGGCAAACTGGCCGCCAGCCTGGTACAGCCAGAAAGCTGTATCTACCTTGATGCAGG TACGACCACGCTGGCGATCGCCAGGCAGCTGGTTACGATGAATAAACTTACGGTGGTGAC CAATGATTTCGTTATCGCCGATTACCTGATGGACAATAGCGGTTGCACAATTATTCACAC TGGCGGGGCGGTATGCCGGGAAAACCGGTCGTGCGTCGGTGAAGCCGCGGCGACGCTTTT GCGCGGGCTGATGATTGACCAGGCCTTTATTTCCGCCTCTTCCTGGAGCGTGCGCGGTAT TTCAACGCCGGCAGAAGATAAAGTCACGGTGAAACGGGCCGTCGCCAGCGCCAGCCGCCA AAAAATTCTGGTGTGCGACGCGACCAAATACGGCCAGGTCGCGACGTGGCTGGCGTTATC GCTGGCGGAATTCAACCAAATCGTCACCGATGACGGCCTGCCGGAAAGCGCAATTCGGGC GCTGGCTAAAGTGGATATCTCACTGCTGATGGCCAAACAATAGCGAAGCGGCGCAAGCCG CTTACGTCATCATCTTGCGAACCAGTTGCGTAAACTGTTCGCGTTCTTCAGCGCTCAGTC GCCCCAAAAACTCATCGTCAACGCGATCCCCCAGTGGTATCGCGGCGGCGAGCAACGTTT GGCCCTGAACGGTGAGATAGACAAAACGCCGACGTTTATCCAGCGGATCGTTTTCTCGCT TTACCAGCCCACGATTTTCCATCCGGCTTAACATCTCCGCCAGCGTCGCTTTAGTGCTGA CCGCCGCTTCGGTCAGATCGACCTGTTCAATACCCGGATGTTCAGCAATAACGCGCATCA CCGCATATTGAGGTTTGGTGAGCTCCGGTAGTTCATGCTGCCAGCGTGCGGTATGTTGCT GAAAAAGTTGGCGTAACAGATGAAACGCGGTGTTTCGTAACTCCATGAGCGCTCCGGATA AATTAACTTTTTCTATCATAACGACTTATGCACGGTTTTTTAATGACGAATGCTTTAGCT AAACGTGCGCAGGCATCGGGAGCGATCTTGTCGCAAAGGCCGTGTGGGCGTATTTTGATC AAAATGTTCGTATACGAACGATATTTGAGGTAAGAAATGAGATTGATTGTGGGGATGACC GGTGCGACCGGCGCGCCGCTTGGCGTCGAGCTACTCCAGGCATTGCGGGCGATACCTGAT GTTGAAACGCATCTGGTAATGTCAAAGTGGGCGAAAACCACTATTGAACTGGAGACGCCC TACACGCCCGCTGAGGTAGCCGCCCTGGCAGATTATTGTCATAGCCCGGCCGATCAGGCG GCGACCATTTCCTCCGGCTCATTTCGTACCGACGGCATGATTATTATCCCCTGCAGTATG AAAACACTGGCGGGGGTTCGCGCCGGCTATGCCGATGGGCTGGTGGGACGCGCTGCCGAT GTCGTGTTGAAAGAGGGTCGCAAGCTGGTGCTTGTGCCGCGGGAAATGCCGCTCAGCACA ATTCATCTGGAAAACATGCTTGCGCTTTCTCGTATGGGGGTGGCGATAGTGCCGCCCATG CCCGCGTTCTACAACCTGCCGCAAACCGTTGACGATATTATCCAGCACATCGTGGCGCGC GTTCTCGACCAGTTTGGTCTGGAGCATACGCGCGCGCGCCGCTGGCAAGGACTGCGACAG GCAGCAAATTTTTCACAGGAGAATGGATAATGGCATTTGATGATTTGCGCAGTTTTTTAC ATGCGCTGGATCAGCAGGGACAACTGCTGAAAATCAGCGAGGAAGTGAATGCGGAGCCGG ATCTCGCCGCCGCTGCCAACGCAACGGGACGAATCGGCGATGGCGCGCCCGCGCTGTGGT TTGACAATATTCGTGGTTTTACCGACGCCCGCGTGGCGATGAATACCATCGGTTCCTGGC AGAACCATGCCATCTCTCTGGGTTTGCCGCCTAACACGCCGGTTAAAAAACAGATCGATG AATTTATTCGCCGCTGGGACAATTTTCCGGTAGCGCCGGAACGACGGGCGAATCCGGGCT GGGCGGAAAATACCGTCGACGGCGACGCGATCAACCTGTTTGATATCCTGCCGCTGTTTC GTCTGAACGACGGCGACGGCGGATTCTATCTGGATAAAGCCTGTGTGGTATCACGCGATC CGCTCGATCCCGATAACTTCGGCAAGCAGAATGTCGGCATCTACCGTATGGAAGTTAAAG GCAAGCGTAAGCTGGGTCTGCAACCAGTGCCGATGCATGATATCGCATTGCACCTGCACA AAGCCGAAGAGCGCGGGGAAGATCTGCCGATTGCGATCACGTTGGGTAACGATCCGATCA TTACCCTGATGGGCGCAACGCCGCTGAAATACGATCAGTCAGAGTATGAAATGGCAGGCG CGCTGCGTGAAAGCCCCTATCCTATCGCCACCGCGCCGCTGACCGGTTTTGATGTACCGT GGGGATCTGAAGTCATTCTTGAAGGGGTCATCGAAAGCCGTAAACGTGAAATTGAAGGGC CGTTCGGCGAATTTACCGGCCACTATTCCGGCGGTCGCAACATGACCGTGGTGCGTATCG ATAAGGTCTCTTACCACAGCAAACCCATTTTTGAATCGCTCTATTTGGGGATGCCGTGGA CGGAAATCGACTACCTGATGGGGCCGGCGACCTGTGTGCCACTGTATCAACAGCTGAAAG CCGAATTTCCGGAAGTGCAGGCGGTAAACGCTATGTACACCCACGGCTTGCTGGCCATCA TCTCGACCAAAAAACGCTACGGCGGCTTTGCCCGTGCGGTGGGCCTGCGCGCGATGACGA CGCCGCACGGTCTGGGATATGTGAAGATGGTGATCATGGTTGATGAAGATGTCGATCCAT TTAATCTGCCACAGGTGATGTGGGCGTTGTCGTCGAAAGTGAATCCGGCAGGCGATCTGG TACAGCTACCGAATATGTCCGTCCTGGAACTGGACCCGGGTTCAAGCCCGGCGGGGATTA CCGACAAACTGATCATTGACGCTACCACGCCGGTTGCGCCAGATAACCGTGGTCACTATA GCCAGCCGGTTGTGGATTTACCGGAAACTAAAGCCTGGGCTGAAAAGCTGACCGCCATGC TGGCCAACCGTAAATAAGGAGTAACCGATGATTTGTCCACGCTGTGCCGATGCACATATT GAACTCATGGCGACTTCGCCGGTAAAAGGAGTCTGGACGGTATATCAGTGTCAGCATTGT CTGTATACCTGGCGCGATACCGAACCGTTACGCCGTACCAGCCGCGAACACTATCCACAA GCGTTTCGCATGACGCAAAAAGATATTGATGACGCGCCAATGGTGCCGAGTATCCCGCCG TTGCTGGCAGAAGACAAACGGTAAAAAAAAGGCCAGTCTGTCGACTGGCCTTTTTTTGAC AAGGGTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTCTGCAGAATTTCG CGCAGACGGCGCAGGCCTTCAACCTGAATCTGACGAACACGTTCACGCGTAAGACCGATT TCACGGCCTACATCTTCCAGTGTCGCAGCTTCATATCCCAGCAGACCGAAACGGCGCGCC AGCACTTCACGCTGTTTGGCGTTCAGTTCGAACAACCATTTGACGATGCTCTGTTTCATA TCGTCATCTTGCGTGGTGTCTTCCGGACCGTTCTCTTTTTCATCGGCCAGGATGTCCAGC AACGCTTTTTCGGAATCACCGCCCAGCGGGGTGTCTACCGAGGTAATGCGCTCGTTGAGA CGAAGCATACGGCTGACGTCATCAACCGGTTTATCCAGTTGCTCTGCAATTTCTTCCGCA CTCGGTTCGTGGTCCAGTTTATGCGACAACTCACGTGCGGTGCGCAGGTATACGTTCAGC TCTTTAACAATGTGAATCGGCAAGCGAATCGTACGGGTTTGGTTCAT
Region Details
| Region | 1 |
| Region Length | 8Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 1064-9150 |
| # tRNA | 0 |
| # Total Proteins | 11 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 5 |
| Phage + Hypothetical Protein % | 100% |
| # Bacterial Proteins | 0 |
| Attachment Site | no |
| # Phage Species | 3 |
| Most Common Phage Name(hit genes count) | PHAGE_Escher_RCS47_NC_042128(4) PHAGE_Escher_vB_EcoM_Schickermooser_NC_048196(1) PHAGE_Salisa_1_NC_017983(1) PHAGE_Aeromo_phiA8_29_NC_048660(1) PHAGE_Escher_phAPEC8_NC_020079(1) PHAGE_Synech_Bellamy_NC_047838(1) PHAGE_Cyanop_P_RSM1_NC_021071(1) PHAGE_Cyanop_S_TIM5_NC_019516(1) PHAGE_Prochl_Syn1_NC_015288(1) PHAGE_Entero_vB_KleM_RaK2_NC_019526(1) PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453(1) PHAGE_Klebsi_ST147_VIM1phi7.1_NC_049451(1) PHAGE_Escher_ESCO13_NC_047770(1) PHAGE_Synech_S_ShM2_NC_015281(1) PHAGE_Escher_ESCO5_NC_047776(1) PHAGE_Synech_S_SM2_NC_015279(1) PHAGE_Entero_phi92_NC_023693(1) |
| First Most Common Phage # | 4 |
| First Most Common Phage % | 36.36% |
| GC % | 55.88% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi||ref|CAAZ01000388.1| Salmonella enterica subsp. enterica serovar Typhi str. E98-3139, 97068, gc%: 52.50%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 11 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(1064..2014) | PHAGE_Escher_vB_EcoM_Schickermooser_NC_048196: hypothetical protein; PP_00001; phage(gi100087) | 9.61e-07 | Showinfo_outline |
| 2 | complement(2054..2830) | hypothetical; PP_00002 | 0.0 | Showinfo_outline |
| 3 | complement(2835..3473) | PHAGE_Escher_RCS47_NC_042128: hypothetical protein; PP_00003; phage(gi100018) | 3.65e-111 | Showinfo_outline |
| 4 | complement(3470..4291) | PHAGE_Escher_RCS47_NC_042128: hypothetical protein; PP_00004; phage(gi100019) | 1.09e-74 | Showinfo_outline |
| 5 | complement(4346..4765) | PHAGE_Escher_RCS47_NC_042128: hypothetical protein; PP_00005; phage(gi100020) | 1.46e-44 | Showinfo_outline |
| 6 | 4998..5726 | PHAGE_Escher_RCS47_NC_042128: hypothetical protein; PP_00006; phage(gi100021) | 1.27e-89 | Showinfo_outline |
| 7 | complement(5745..6182) | hypothetical; PP_00007 | 0.0 | Showinfo_outline |
| 8 | 6320..6913 | hypothetical; PP_00008 | 0.0 | Showinfo_outline |
| 9 | 6913..8340 | hypothetical; PP_00009 | 0.0 | Showinfo_outline |
| 10 | 8351..8587 | hypothetical; PP_00010 | 0.0 | Showinfo_outline |
| 11 | complement(8632..9150) | PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453: hypothetical protein; PP_00011; phage(gi100004) | 7.84e-25 | Showinfo_outline |
Sequence
>complement(1064..2014)
MQIIITGGGGFLGQKLASALLNSSLAFNELLLVDLKMPARLSDSPRLRCLEADLTQPGVLENVITANTSVVYHLAAIVSSHAEDDFDLGWKVNLDLTRQLLEACRRQPQKIRFVFSSSLAVYGGTLPECVTDTTALTPRSSYGAQKAACELLVNDYTRKGYVDGLALRLPTICVRPGKLNRAASSFVSAIIREPLQGETTICPVSESLRLWISSPATVIHNLSLAATLPAPGEASSINLPGISVTVGEMLETLRQAGGQAARDRVTHQRDEGVEKIVASWPGRIDNQRALALGFVADKRFDDIIERFRQDDMEGRS
Sequence
>complement(2054..2830)
MPRFAADLSMMFTEVPFIERFAAAAEAGFQAVEFLFPYGFAASEIKAQLSRHDLTLALFNTSAGDTAAGEWGRAALPGREHDARADIDLALEYALALECEQVHIMAGVVPDGADGARYRATFIDNLRYAAGRFAAHDKRILIEALSPGVKPGYLFSSQYQALGIAEEVDRPNVFIQLDTFHAQKVDGNLSHLIREYAGRYAHVQIASLPDRHEPDDGEINYPWLFRLFDDVGYCGWIGCEYQPRNTTQEGLGWFNAWR
Sequence
>complement(2835..3473)
MTILAKEEHALREEMVRIAASFFQRGYATGSAGNLSLLLPDGNILATPTGSCLGNLDPQRLSKVDPQGEWLSGDKPSKEVRFHLALYRNNPCCKAVVHLHSTWSTALSCLEGLDPQNVIRPFTPYVVMRMGDIPLVPYYRPGDDRIARDLAALAARHQAFLLANHGPVVCGENLQEAANNTEELEETAKLIFILGERPIRYLTTEEIAQLRR
Sequence
>complement(3470..4291)
LPATFIASAIHRAQAQGRCGVIPAQTLDEGVAATRAALSRLQQEGYRYAVLDALNERHLEIQGEVLRDAPLVTGGSGLAMGLARQWAKHGVSQARSAGYPLSGRAVVLSGSCSQMTNQQVAFYRQHAPTRDVDVARCLSSEAREAYAEALAQWVFSQDSELAPMISATASTQALAAIQQQYGATEASYAVEALFSLLAARLAEGGITRFIVAGGETSGVVTQSLGITGFHIGPCISPGVPWVNALHAPVSLALKSGNFGDESFFIRAQREFQV
Sequence
>complement(4346..4765)
MTTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGGR
Sequence
>4998..5726
MVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSGCTIIHTGGAVCRENRSCVGEAAATLLRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALSLAEFNQIVTDDGLPESAIRALAKVDISLLMAKQ
Sequence
>complement(5745..6182)
MIEKVNLSGALMELRNTAFHLLRQLFQQHTARWQHELPELTKPQYAVMRVIAEHPGIEQVDLTEAAVSTKATLAEMLSRMENRGLVKRENDPLDKRRRFVYLTVQGQTLLAAAIPLGDRVDDEFLGRLSAEEREQFTQLVRKMMT
Sequence
>6320..6913
MRLIVGMTGATGAPLGVELLQALRAIPDVETHLVMSKWAKTTIELETPYTPAEVAALADYCHSPADQAATISSGSFRTDGMIIIPCSMKTLAGVRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAIVPPMPAFYNLPQTVDDIIQHIVARVLDQFGLEHTRARRWQGLRQAANFSQENG
Sequence
>6913..8340
MAFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVAPERRANPGWAENTVDGDAINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIATAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYHSKPIFESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLANRK
Sequence
>8351..8587
MICPRCADAHIELMATSPVKGVWTVYQCQHCLYTWRDTEPLRRTSREHYPQAFRMTQKDIDDAPMVPSIPPLLAEDKR
Sequence
>complement(8632..9150)
MNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE
Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 97068 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: PP_00001 (Region 1)
Locus: PP_00001ORF Start: 1064
ORF Stop: 2014
Strand: Backward
Protein Sequence: MQIIITGGGGFLGQKLASALLNSSLAFNELLLVDLKMPARLSDSPRLRCLEADLTQPGVLENVITANTSVVYHLAAIVSSHAEDDFDLGWKVNLDLTRQLLEACRRQPQKIRFVFSSSLAVYGGTLPECVTDTTALTPRSSYGAQKAACELLVNDYTRKGYVDGLALRLPTICVRPGKLNRAASSFVSAIIREPLQGETTICPVSESLRLWISSPATVIHNLSLAATLPAPGEASSINLPGISVTVGEMLETLRQAGGQAARDRVTHQRDEGVEKIVASWPGRIDNQRALALGFVADKRFDDIIERFRQDDMEGRS
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00001, hypothetical protein, phage(gi100087), PHAGE_Escher_vB_EcoM_Schickermooser_NC_048196
Homolog/Ortholog E-Value: 9.61e-07
Locus 2: PP_00002 (Region 1)
Locus: PP_00002ORF Start: 2054
ORF Stop: 2830
Strand: Backward
Protein Sequence: MPRFAADLSMMFTEVPFIERFAAAAEAGFQAVEFLFPYGFAASEIKAQLSRHDLTLALFNTSAGDTAAGEWGRAALPGREHDARADIDLALEYALALECEQVHIMAGVVPDGADGARYRATFIDNLRYAAGRFAAHDKRILIEALSPGVKPGYLFSSQYQALGIAEEVDRPNVFIQLDTFHAQKVDGNLSHLIREYAGRYAHVQIASLPDRHEPDDGEINYPWLFRLFDDVGYCGWIGCEYQPRNTTQEGLGWFNAWR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00002, hypothetical
Homolog/Ortholog E-Value: N/A
Locus 3: PP_00003 (Region 1)
Locus: PP_00003ORF Start: 2835
ORF Stop: 3473
Strand: Backward
Protein Sequence: MTILAKEEHALREEMVRIAASFFQRGYATGSAGNLSLLLPDGNILATPTGSCLGNLDPQRLSKVDPQGEWLSGDKPSKEVRFHLALYRNNPCCKAVVHLHSTWSTALSCLEGLDPQNVIRPFTPYVVMRMGDIPLVPYYRPGDDRIARDLAALAARHQAFLLANHGPVVCGENLQEAANNTEELEETAKLIFILGERPIRYLTTEEIAQLRR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00003, hypothetical protein, phage(gi100018), PHAGE_Escher_RCS47_NC_042128
Homolog/Ortholog E-Value: 3.65e-111
Locus 4: PP_00004 (Region 1)
Locus: PP_00004ORF Start: 3470
ORF Stop: 4291
Strand: Backward
Protein Sequence: LPATFIASAIHRAQAQGRCGVIPAQTLDEGVAATRAALSRLQQEGYRYAVLDALNERHLEIQGEVLRDAPLVTGGSGLAMGLARQWAKHGVSQARSAGYPLSGRAVVLSGSCSQMTNQQVAFYRQHAPTRDVDVARCLSSEAREAYAEALAQWVFSQDSELAPMISATASTQALAAIQQQYGATEASYAVEALFSLLAARLAEGGITRFIVAGGETSGVVTQSLGITGFHIGPCISPGVPWVNALHAPVSLALKSGNFGDESFFIRAQREFQV
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00004, hypothetical protein, phage(gi100019), PHAGE_Escher_RCS47_NC_042128
Homolog/Ortholog E-Value: 1.09e-74
Locus 5: PP_00005 (Region 1)
Locus: PP_00005ORF Start: 4346
ORF Stop: 4765
Strand: Backward
Protein Sequence: MTTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGGR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00005, hypothetical protein, phage(gi100020), PHAGE_Escher_RCS47_NC_042128
Homolog/Ortholog E-Value: 1.46e-44
Locus 6: PP_00006 (Region 1)
Locus: PP_00006ORF Start: 4998
ORF Stop: 5726
Strand: Forward
Protein Sequence: MVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDAGTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSGCTIIHTGGAVCRENRSCVGEAAATLLRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALSLAEFNQIVTDDGLPESAIRALAKVDISLLMAKQ
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00006, hypothetical protein, phage(gi100021), PHAGE_Escher_RCS47_NC_042128
Homolog/Ortholog E-Value: 1.27e-89
Locus 7: PP_00007 (Region 1)
Locus: PP_00007ORF Start: 5745
ORF Stop: 6182
Strand: Backward
Protein Sequence: MIEKVNLSGALMELRNTAFHLLRQLFQQHTARWQHELPELTKPQYAVMRVIAEHPGIEQVDLTEAAVSTKATLAEMLSRMENRGLVKRENDPLDKRRRFVYLTVQGQTLLAAAIPLGDRVDDEFLGRLSAEEREQFTQLVRKMMT
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00007, hypothetical
Homolog/Ortholog E-Value: N/A
Locus 8: PP_00008 (Region 1)
Locus: PP_00008ORF Start: 6320
ORF Stop: 6913
Strand: Forward
Protein Sequence: MRLIVGMTGATGAPLGVELLQALRAIPDVETHLVMSKWAKTTIELETPYTPAEVAALADYCHSPADQAATISSGSFRTDGMIIIPCSMKTLAGVRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAIVPPMPAFYNLPQTVDDIIQHIVARVLDQFGLEHTRARRWQGLRQAANFSQENG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00008, hypothetical
Homolog/Ortholog E-Value: N/A
Locus 9: PP_00009 (Region 1)
Locus: PP_00009ORF Start: 6913
ORF Stop: 8340
Strand: Forward
Protein Sequence: MAFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVAPERRANPGWAENTVDGDAINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIATAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYHSKPIFESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLANRK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00009, hypothetical
Homolog/Ortholog E-Value: N/A
Locus 10: PP_00010 (Region 1)
Locus: PP_00010ORF Start: 8351
ORF Stop: 8587
Strand: Forward
Protein Sequence: MICPRCADAHIELMATSPVKGVWTVYQCQHCLYTWRDTEPLRRTSREHYPQAFRMTQKDIDDAPMVPSIPPLLAEDKR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00010, hypothetical
Homolog/Ortholog E-Value: N/A
Locus 11: PP_00011 (Region 1)
Locus: PP_00011ORF Start: 8632
ORF Stop: 9150
Strand: Backward
Protein Sequence: MNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PP_00011, hypothetical protein, phage(gi100004), PHAGE_Klebsi_ST13_OXA48phi12.1_NC_049453
Homolog/Ortholog E-Value: 7.84e-25
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download