gi||ref|CAAZ01000018.1| Salmonella enterica subsp. enterica serovar Typhi str. E98-3139, 23107, gc%: 48.98%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
complement(354..746)               PHAGE_Phage_Gifsy_2_NC_010393: prophage antitermination protein; late gene regulator; Lamba gpQ homolog; PP_00001; phage(gi169257290)     1.15e-65            MARYVFRDYSLSAASLVTCSSCHGAKLIDAEVFTNKVTYPDGKPPKWVKDTKGISPSDWEVWKSVREQVRVVCKACDGKGQVKNECRCRGRGEILDRKNLSCRACRFIKNAQDAREEATHVSKIPRFLKH
complement(769..933)               PHAGE_Phage_Gifsy_2_NC_010393: prophage antitermination protein; late gene regulator; Lamba gpQ homolog; PP_00002; phage(gi169257290)     3.01e-27            MASLGLLTAKAAVGIELYLAKAGVLSSENIIAYIRQLAEQRAERHGALRKIGKG
complement(1167..1778)             PHAGE_Phage_Gifsy_2_NC_010393: NinG; PP_00003; phage(gi169257288)                    5.36e-145           MAKLPRRKCANKECRQWFHPIREGQIVCSYQCASTVGKEQTRKAREAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLGCISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVCNVYKSGNIEAYRAALVERYGEAAVLALENNNTPHRWTVEELKEIRLAALSDLRALKKLEAA
complement(1781..1981)             PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; PP_00004; phage(gi169257287)     3.18e-44            MKYSWFHHHDCTTEQADTLISDYQKRGVRTEKSLNPDFITWTVSAKLPEYAHRVRTPKSLRQKVWG
complement(1987..2589)             PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; PP_00005; phage(gi169257286)     5.23e-146           MAHELQLIKQSSGILIPATPETSDILQSKIKLGAVLVAEFRQVRNPAFHRRFFALLNLGFEYWEPTGGAISANERKLVNGYAKFLAAYGGNESALLDAAEQYLEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEVEFQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSFAG
complement(2629..2868)             PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; PP_00006; phage(gi423262436)     3.00e-53            MLEDLPESGYAVIRCYDHCVVARFGSIPDSGRALMYRRGDEISFVPLHPDDIVGTPTLFTQMLEKAGYRITRCFDTLQM
complement(2924..3163)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage damage-inducible protein DinI; PP_00007; phage(gi169257284)     3.26e-50            MRIELVISRTKQLPEGAVPALEKELITRLQNQYENCNLTIRRGSQDGLSIVGAADGDKKRIQSILQETWESADDWFYAY
complement(3583..3843)             hypothetical; PP_00008                                                               N/A                 MAIEYVEGVNYLSIEDIVYINRSLIEIQTPNEPIGVLNPNNLSSSQSRPSTIRYYEQTDDMFRLSAVLIESLIQNHPFANATNAPL
complement(3854..4033)             hypothetical; PP_00009                                                               N/A                 MGHALKKADRLYIPPRDKSMVAKPRAAISKACSHTGQVKNAFEFGFARYEKAMEELSKV
complement(4277..4438)             hypothetical; PP_00010                                                               N/A                 LGRLKSERYIQRGRNTTAMLGVVHSNQDMIFVQKVLFIGFVSTLIDSQDQPIS
complement(4520..4786)             PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; PP_00011; phage(gi423262434)     3.70e-59            MRIITRKKPAFTDLYQTGVLTRIAAVKTDSGGWRLFGVWRDQDIAVFVEAARGGIREWSGLNYLAEFVFSCGISLWEVHNKTDRKTPA
complement(4880..5452)             PHAGE_Salmon_ST64T_NC_004348: hypothetical protein; PP_00012; phage(gi24371543)      7.39e-66            MTTITKEWLQQTIAEFENTRDDIPFGLSDDDAKILIVLKRALASLEREQVRHEHADWSDATFGDVGPIGPLKHLSKEALETAAELGDLSEWADMQFLLWDAQRRAGITDEQIALAMVEKLAVNKKREWPEPKDGEPRLHIKEQPVPVVPEECPEEIRDLMASHSDALFNDDDAQEIWNACRAAMLNGGKS
complement(5456..5929)             PHAGE_Gordon_Nymphadora_NC_031061: capsid maturation protease; PP_00013; phage(gi100067)     1.02e-68            MESQSILDMCCGSRMFWFNKRDERAVFADIRAEEHILCDGRRLVISPDLIADFRALPFADASFPVVVFDPPHLERVGQTAWMGKKYGRLNKKTWRSDLRAGFKEAFRVLRAHGVLIFKWNETQIPVSQILALTDVKPIIGQRTGKNDKTHWIIFVKD
complement(5929..6453)             PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; PP_00014; phage(gi169257282)     7.32e-44            MSNIDKRALREVAERATPGNWRRTSSLFNGITVTPFSLCGEEVTLAHTVEKRDAEFIAAANPATMLALLDELETKEEQRANWFRMAQKLGEDLDTAERLIAELDQRLIEYAGIATREARRVAELEARKVNLSKLSVGEVMHMTGFSRDYAEGWCAGNDNAIHEIRTAGIKVKES
complement(6450..6797)             PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; PP_00015; phage(gi169257281)     5.91e-79            MARPKTHSERMIILERIIGLVKEQGRITTNDVVAIFGVHRTTAEKYLRIALERGGFIRHGRCGIFRDQRAVIDYDLRRYSSSQVTGFSALPVLEKSPVMQVYGASKMSINKGGAQ
complement(6808..7557)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; PP_00016; phage(gi169257280)     0.0                 MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRSEELDRMNQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGFASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYDGGQSEASLLDDLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGARVIDRLQMDGGMWVNFDWESYRKNVSHLRIVK
complement(7560..8537)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; Lambda gpo homolog; PP_00017; phage(gi169257279)     0.0                 MSNTAEIYKFPAPIPTQQECRMADLENGYLRLANQIQDALCIVELSGREFRVLNAIIRLTYGWSKKSDRIANSLIADKTTLKVKHVSEAVLSLAYRNIIILRRIGQTRYIGINTNLDKWAYSKPHCSKCPVSFPDDEIATWIISVPETRDSYTRKGGRASPKTGIVIPENRDSVLPHSAIPENGDSYPRKEGRASPKTGNTKDIIPKTNIKDLTPFNPPKGKVKFDPLSIPVPEWLNAASWNEWVTYRQQSGKPIKTELTVTKAFRLLKECLDEGHDPVNVINTSIANGYQGLFKPKFALNDRRAGRDVNHISAPDKTIPTGFRG
complement(8521..8637)             hypothetical; PP_00018                                                               N/A                 VGLKMTATKKAKAAVRGHQRLSGAKTVGNCGDEYVKYR
complement(8628..8948)             PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage transcriptional activator; Lambda gpCII analog; PP_00019; phage(gi169257278)     2.07e-72            MENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
complement(8968..9204)             PHAGE_Phage_Gifsy_2_NC_010393: putative bacteriophage regulatory protein; Lambda gpCro analog; PP_00020; phage(gi169257277)     8.67e-17            MKVTVQRKILSVCSQAGLGRRLGRRAQTVNGWFKNKVPGELVVRVARAIDWKVTPHELRPDLYPNPTDGLPSQEASAK
9361..9738                         PHAGE_Phage_Gifsy_2_NC_010393: putative bacteriophage regulatory protein; repressor; Lambda gpCI analog; PP_00021; phage(gi169257276)     1.87e-15            VLNETGITQSELGRRVGATSQSVNGWCQSGILPRKDILELLPKATGKPLYWFFMEDDDESDVPERLTQGGPTDLNDRQKRLLEIFDQLPTVEQDRFIELAGTRLQELDDFMAEYQRRRKIEPPSR
9982..10227                        PHAGE_Escher_HK639_NC_016158: hypothetical protein; PP_00022; phage(gi356870641)     3.48e-18            VINVPLAGDKANEGEMTNYGTTTLPRTSVVPGMLVKYQGRTYRASANVGKGLYLFTLFERLRTTNDEIEVYLNQHGKPATH
10318..10614                       PHAGE_Salmon_SEN34_NC_028699: host-nuclease inhibitor Gamma; PP_00023; phage(gi966201456)     2.14e-65            MNAYLTYDRIEAQDWTRHYQQIAREEKESELADDLEKGLSLHMLESLCMDELPRHGANKKAISRAFDDDVEFQERASEFVRYMAETFSRHQIDIESEE
10620..11405                       PHAGE_Salmon_SEN34_NC_028699: recombinational DNA repair protein RecT (prophage associated); PP_00024; phage(gi966201455)     0.0                 MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTRDGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTTYTTDRQPERDITPVSDETMREINDLLITLNKTWDDDLLPLCSQIFRRDIGASSDLTQIEAVKALGFLKQKAAEQKVEA
11402..12082                       PHAGE_Salmon_SEN34_NC_028699: exonuclease; PP_00025; phage(gi966201454)              3.05e-167           MTPEIILARTGIDVSNIEQGDDAWHRLRLGVITASEVHNVISRPKSGKKWTDMKMSYFLTLLAEVCTGVAPEVNARALAWGKQYEDDARTLFEFTTDVKVTGSPILFRDEDMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGIDAWYFANYDPRMKREGIHHVVVERDDKYMSLFNEMVPEFIEKMDEALKEIGFTFGEQWR
12160..13224                       PHAGE_Salmon_SPN1S_NC_016761: putative bacteriophage protein; PP_00026; phage(gi374531224)     0.0                 MSKIGDYFFEFPASRGLQGNTVVLMMTVPARALTRVLASDNHGNTLERSQRELNPARAKKFYEYLRTAYEKKEPFIIPPLVGNCDSFIEFEEFGNTNVGVARFPMDAEIKLFDGQHRAAGIAEFCRTYGEPIHIPMMLTHQLPLKTRQQFFSDINNNVSKPSAAINMAYNGRDKIAQDMVSFLSSHAMFSEITDFEHNVVPAKSDLWISFKPLSDATAKFSGNGDELATSDIYDIWEAWLKLTAIKGIRHGCTPVEYKRDYIQFHAVMINAFGYAMQELLRHRPAHIIVQMIEELVNNSTMSELENFFLISSWSGVCASTEKDRATVIASVASQKAASVRLIQAITTKSFEVAA
13257..14102                       PHAGE_Salmon_SEN34_NC_028699: methyl-directed repair DNA adenine methylase; PP_00027; phage(gi966201453)     0.0                 MPIEEPALRTWRRPFLKWAGGKYSLLPELDRLIPAGKRLIEPFVGGGSVFLNSDKHERFLLADVNADLINLYQMLAVVPDSVIAEAMKAFRHLNDAENYTVIREAFNAQKLNATERAAAFLYLNRHCFNGLMRYNLDGFFNVGWGKYKAPYFPEEEIRAFRQKSHACVFMTAGFERTLRLAGDGDVVYCDPPYEPMPGTAGFTNYASGGFSWDSQVALAESCVAAHQRGAKVFISNSTAPRVIELYERHGFTLHRVNARRSISSKGSTRETANDIVASLG
14105..14347                       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; PP_00028; phage(gi169257270)     2.11e-51            MMKLINRSKQSPVGRRACDIALAAHHEKFGDYGRQKHVTNYTVVVDGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN
14388..14636                       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; PP_00029; phage(gi169257269)     2.25e-55            MSNIIQLTPNKWVSEKVLIAVTGLKPGTITRARKESWMLGREYLHISPDGNPKPSSECIYNREAVDQWIEAQKKNQPGAKTT
14681..15508                       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage integrase; PP_00030; phage(gi169257268)     0.0                 MANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIAGELRSSVCFAIRMGNFNYVEKFPNSTNLARFGQDRKEITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSSTVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRNLTQTDEFTLPKTAQVLTG
15505..15972                       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage integrase; PP_00031; phage(gi169257268)     1.10e-109           VIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLPQSMVAAQ
16167..17369                       PHAGE_Agroba_Atu_ph07_NC_042013: hypothetical protein; PP_00032; phage(gi100242)     1.37e-50            MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGDDLLGIYADAIREQVDAMQHLRLQEDEFQWLSGLPFFKPDYLNWLREFRYNPAQVCVTNDNGKLNIRLTGSWREVIMWEVPLLAVISELVHHYRSPNAGVDQALDALESKLVDFTALTANLDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGTSNYDLARRLALTPMGTQAHEWFQAHQQINPDLATSQRAALAAWLNEYPDQLGIALTDCITMDAFLRDFGIEFASRYQGLRHDSGDPVAWGEKAIAHYEKLGIDPLTKTLVFSDNLDLPKAVELYRHFASRVQLSFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPQVRKAS
