gi|00000000|ref|NC_013198.1|  Lactobacillus rhamnosus GG whole genome sequence, strain GG (ATCC 3010111, gc%: 46.69%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1102419..1102456                   attL                                                                                 N/A                 TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT
complement(1102527..1103711)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05195; phage(gi100026)      0.0                 LactobacillusrhamnosusGGMASISSYKLKDGKKAWEFYIFAGVDPQTGKEIKIHRRGFPTEKIAQQEATLAESEIIRGHSHYQTERILMADYLNQWITKLKVNVKEGSMIIYRYNLKKYIIPKIGDIRLAKYTLKEHQEFISSLFNDGLSLNTVKLINGTLHNALKKAVAIGYITKNPTVGVEFSAYAKDNSKKLHFWTKDQVGSFIEAAEEDKEPMWLSFFVTLIDCGLRVGEAMALRWSDIDFNKNTLSVNATRIYRAETGSNAGKIALDRPKTLSSKRTEYMTARVNDLLQQQYERHFSHGNVQGFRFSTSHNNDFVFTYSSDAKFGQPLRSRATTGAFNRITNRAGLPHIRIHDLRHTHAVLMREAGLSLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQFEKYLNQ
1103882..1104088                   hypothetical protein; LGG_RS05200                                                    N/A                 LactobacillusrhamnosusGGMMKAFKIQDAVKLYSSLKKTYEREDSKIQKMQEEIDREMKKASLTTKPSAEHQGPKRHLKIHRDRPNS
complement(1104056..1105057)       hypothetical protein; LGG_RS05205                                                    N/A                 LactobacillusrhamnosusGGMEDHNLHDEAEAEKKLREYIYVDTDLMNSLLAQFDEGLSTLTTRMNEKTSILTQVATKGGRKSAKISGGVPGIANGSGSAEDSHSMADESSTHNRHQYSENIVYGDYGVEILEGYLKKQFVPVENAEPGDLVLYKDSFSLYDFDSLEAGTNPEIIDPVLRLSTDNVSEEKLDGYKKQLRVIQARTRNASNAKMQIDDMKKKIQKAEQKITEDKSSQENFRSVYAMVNFFSKSMPNSVIVSTEQTVVFAQKSLFRLSPSQLQMLQKNPRTLYIMGIVENKSDNTNWKHQTLTNSQLAPRDIGAIASYLSSIALTNFGISQKEDSLRIRPISMYF
complement(1105168..1105371)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05210; phage(gi100029)      8.85e-35            LactobacillusrhamnosusGGMNGPVTLSEAHFIGLIIVLIGVYLALFGHKHRWVYWLIDPDKPGSSLWLAAVFIIIGVLMMMVRKMQ
complement(1105395..1105820)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05215; phage(gi100030)      5.18e-98            LactobacillusrhamnosusGGMANSTIRQADILLRECTVMQVATLDTDTGFPNIVSLTPLKSHRSLKEILFYTDRDTTTIQNVLEKPVVAVYCFNELHHSSLLLRAKAVVLTAEEAIPSFTESLNSFQKSLQYDRPVIIRCNPLTVKIRYNNDIEFSKLNEI
1106203..1106424                   hypothetical protein; LGG_RS05220                                                    N/A                 LactobacillusrhamnosusGGMMNEDKLGYSYSYDLKDGIVKVKDFVKYLESLPSDSTIRIQGISDDRPAVIDDNVYFEKSSGQLVIQPDSLSI
complement(1106425..1107180)       hypothetical protein; LGG_RS05225                                                    N/A                 LactobacillusrhamnosusGGMSDTKIETMCAECRDYKSSAVAEVTDDESLKFICPRGHTFHAVLRTPLYVPIFENALRAYDDEEYYECYLSAVTSLEKFRNTAIKAYFWSTNNHKPMDKIIDKSHAIKYSERSIASFATISLLLFGESAIPMLNKMYDSTEKRNRVIHGTLIPTKGLCEEVIKNVYQVVKFFQISWIDDDGYCPISNYQDAIATDNYEAIISNKKEHELAVLVGKLYTLSAIQVVHKDKELDVEFNRSFKIIMDIHHRVFW
complement(1107287..1107988)       PHAGE_Lactob_iLp84_NC_028783: hypothetical protein; LGG_RS05230; phage(gi971743092)     2.64e-32            LactobacillusrhamnosusGGMAKKVMGADGKQYKVKKPFYKRVWFWILVIVVVAAIGGGLNNKGKSSSESTEKTAVSKTDKSSSSTSKKDSGKITRADFDSIKLGDLMENGNGGAKLDDLKAQFGNPSSTSSSTTNGVKTDLVTWTNVEGGWGANVIVSFTDGNAFSKNLTGFKLGRKQKITLADFNAFQDGTKYADFTSKWGQPDYYNESLIGGQKNVVAGYTSGVKGDLGSNFNVTFTNDALSGKTQSNMK
complement(1108048..1108470)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05235; phage(gi100035)      1.93e-95            LactobacillusrhamnosusGGMMTDFTSDMLREVLNYGFDRGVGAELTYQLKPYTPSVSNPETRWIAVNMNWHKPKQLPYQAAHEIMHVLHQDPACLYFYSASKNSIEGEANIGGIQILVPLYFAYIDKEDANLNQFMEAFDIPAPMEDTALEAIKEFYIN
complement(1108460..1108798)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05240; phage(gi100036)      1.19e-37            LactobacillusrhamnosusGGMMSFGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLASYFNVSTDFLLGVTDVRSKPEQIDISDSKNDTIMTFEGRPIPPEDLEIIKRLLRGGKHDD
1108933..1109175                   PHAGE_Lactob_iLp84_NC_028783: repressor; LGG_RS05245; phage(gi971743095)             3.72e-49            LactobacillusrhamnosusGGMNEKLKERRKEFHLTMQDISNMIGISKGYYSLIERGERRVSYELAFKIATALKTKPDLIFLEYQSTLSKHIPAQREEVTR
1109172..1109420                   hypothetical protein; LGG_RS05250                                                    N/A                 LactobacillusrhamnosusGGMSKKEHDEHQIQNWEEHDKRQLQSWEELTQEITEHLKSGDQKLQNIHLTNLYDRYDGFKSYGTLLVAVLVNTRDTPKDAPKD
complement(1109417..1109644)       hypothetical protein; LGG_RS05255                                                    N/A                 LactobacillusrhamnosusGGMWDVTFINTQTGLPKTIYGVISIVAEMGDKTEQFSPLTLVHEKARLRGYSFTVFTVNEDPFSLGTNWIPESADGD
1109956..1110504                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05260; phage(gi100041)      1.15e-131           LactobacillusrhamnosusGGMKATISSPLNRFATRTNTPQKVIAYAAKLGRSTINNYFHGTPIRANEATDIANSMNDSELSYEMANLFLGIPKLFSGDGIYHDLRGLLVTDKREEDEEKASFIKHDIEGLANDPNFTRDDAKNLKAYAFEKLDSTVADLTELNAICEMLGISIMDLFSERLPHYQKLHYMRKDEQAWNKDLH
1110483..1110713                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05265; phage(gi100042)      4.16e-47            LactobacillusrhamnosusGGMEQGFTLIDPTKPQRTRKPFKPKVYWTPKDVMAHYQVSAATVSRWKKKGAPFVGPGKTQRVEPEKMERWFARQQGV
1110857..1111084                   hypothetical protein; LGG_RS05270                                                    N/A                 LactobacillusrhamnosusGGMRDTKEYWQDVHDQVENVIYKGHADRGWLWMFELSQRMLNKCAQKNPMAATTGHEKQSKLIYRSSLSRKGGARHA
1111077..1111279                   PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; LGG_RS05275; phage(gi78000001)     1.21e-16            LactobacillusrhamnosusGGMLEPDWNTAALNEYQNRQARQEEEPPLDWQGHRWLMARPTLNTTTNSSTNMTSLTSALARLNMTTAG
1111291..1112166                   PHAGE_Strept_EJ_1_NC_005294: hypothetical protein; LGG_RS05280; phage(gi39653695)     8.41e-76            LactobacillusrhamnosusGGMANEIVASVNNRITEMQKNEGLKLPANYSPSNALNSAWLTLSDNSKGPSLLDKTSPQSQAKALLNMVIQGLSPAKNQVYFIPYGKDLTLMRSYFGSLAILKRLDNVQDVWAEVVREGDKFQIGSDRGRTVVKVFEPRIENQDNAIAAAFAVIVDNNGVENFTIMTKKQIDQSWSHAKTKKVQQEFPEEMAKRTVLNRAAKFFINSSSDNDLLLGAVNDTTADEYDNAEPKDVTPNFDDLIDSKPKEEPKHAANAKETKETKPKETSQPDRAEHRPVTDKEVANLFQNQVNK
1112186..1112950                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05285; phage(gi100046)      1.17e-85            LactobacillusrhamnosusGGMDWQYQSPTWFKKFMACEAEALAELKGEWKPKRDPTALLVGNYLHSYFQSRYAHNKFKQEHPEIISTRGATKGQLKREYQVADNMIRTLRTDPKFKEFYQGKKEVIVKGEIGGVAWKGKLDCLADNHKYFADLKTTMDINKRFYLPEEHRYGSFIEAYNYPLQMAVYQELIRQQYGVQAVPVIIAVSKQDPPDKAAVSMPQDLLDYWLERVKELQPRIEAVKNGEEEPKRCEHCEYCRATKHLTQIISLYDLVE
1112966..1113922                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05290; phage(gi100047)      0.0                 LactobacillusrhamnosusGGMDLFKLIREFYIQQSVNPLSTGQIALWHGLVYQCNQLGWPSEFNMPNRTLETLTGLSRQGIVKSRNALKQSGLIDFQTNGVKATTYSVIDISRKLSTSDSRQPSSQDDDSMSNSRQHGRQPSRQHSLQGSLQPSRQHSSTYTKQDETKLDKTKRQQTTAPVKAAERPAGEPSSSSSSILDICNFWEGNGFGQLSPFTRESLVDWVADMRKAGSPEPEKLVLNALRTAVESNVRNYKYVNGILKNWESKRLLTVAAVDANDSERKTNQPQRRYGKPVRNEKLPDWAKPGYKPEHKKASAEDRAELAEQLQKLRALGEKN
1113935..1114420                   PHAGE_Lactob_PL_1_NC_022757: single-stranded DNA binding protein; LGG_RS05295; phage(gi557308026)     1.75e-99            LactobacillusrhamnosusGGMLNSVSLTGRLTRDVDLRYTQSGTETGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTHKGALVGIEGRIQTRTYDNAQGQKVFVTEVIVDNFALLESRQASQNNPKSQQTANASAAATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLPF
1114438..1114653                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05300; phage(gi100049)      6.68e-42            LactobacillusrhamnosusGGMWHIIERLMREKGYSIRKFSRVAGYKNPTTIYSIKTGQSKDPSFSTMIRIADALGVSLDELRPDKQGEKKS
1114650..1114841                   PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; LGG_RS05305; phage(gi100038)     4.34e-05            LactobacillusrhamnosusGGMSGNSYLKSVRKSIGLTQREFARKIKCSQSHWIKVEDGFSNPSIKLLKQIKKEFPDFDLNKLV
1115211..1115660                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05310; phage(gi100050)      4.16e-68            LactobacillusrhamnosusGGMTQVTVRLYEQGDKVWRDFKAELLKRYENSAMLDISKIKAFSKIEKQEFNNRIVVSKKAIVEKRAVAGVDDSDTLKTSVNNGLEKISKKRKEARAKYARGIAEAASQCNTLIDVAKRIGKSTTFVKRVASEFEIKLPRRNNGHEEIVSR
1115707..1115961                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05315; phage(gi100051)      4.25e-51            LactobacillusrhamnosusGGMQAIKTKMMVGDLVMVPDRVFMGVRDLGGVARIIRIERYNARGARQDINKPVAFENNAPKELIATVEMVDGKQRQYYLKDVKPA
1115958..1116359                   PHAGE_Lactob_Lc_Nu_NC_007501: putative Holliday junction resolvase; LGG_RS05320; phage(gi78000012)     9.22e-66            LactobacillusrhamnosusGGMIRLTIPGNPVPQGRPRFTRMGHAYDPTKSRNYKQHVKSVASELNIEPLSGPIRVSMEIYRQLQKSGSKALIRRKKEGKVRPTVKPDVDNYYKSVSDALTGILWEDDNQIVEIHVGKWYSDQPRVEIEAEEID
1116372..1116836                   PHAGE_Lactob_PLE3_NC_031125: sliding clamp; LGG_RS05325; phage(gi100053)             9.96e-41            LactobacillusrhamnosusGGMNKKLTFTVTVLAGLMFGAGATTIADNVWQGHQNIVETKNNIDKLTAKIHASKSSLSDLQHQLSDAQAQYAALKQQYGNDMANKDAQIQQKIVEGQQAVAQKQAEVDAKQQTINDLTSQLEAAKQANNDLSQAIKDAQSIKDYSDQAVKSVSAK
1116848..1117033                   PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein; LGG_RS05330; phage(gi48697296)     4.02e-35            LactobacillusrhamnosusGGMYVVAGLNTETEYYRAKYQSQCIRWINENMAKHTESHNTRGDDIKVNIPEPLIIKKVEDEK
1117030..1117536                   PHAGE_Lactob_A2_NC_004112: hypothetical protein; LGG_RS05335; phage(gi22296563)      1.39e-75            LactobacillusrhamnosusGGMSEEKLYAVKNDDGEYLTVERTAPWWNSPVGTAVRNIDVALAWAEKYGGHVVTFVEEPKKVVLTKEQAEIVERAHSGKFPAASIAFYGDDDEEPLMNAYVNGYTVAKEKKYNVKVPHTKEVWYYKSGDTDLLTICPADKELRGKFTEAEIEHYGLQYCEKEEVTDDDE
1117526..1117705                   hypothetical protein; LGG_RS05340                                                    N/A                 LactobacillusrhamnosusGGMTNKADIDAAQKAIDAANNAINKLDLCGLYDCAWQAHDGYQRIIDYNKEQLEVTDDGIR
1117692..1117895                   hypothetical protein; LGG_RS05345                                                    N/A                 LactobacillusrhamnosusGGMAFVELEDGSWINPAFIEEIYKRNPSDTVWEAGMNHGEATTITDADRILILKHAGFVRARKEKDNEQ
1117885..1118316                   PHAGE_Lactob_Lb338_1_NC_012530: hypothetical protein; LGG_RS05350; phage(gi226377668)     2.67e-64            LactobacillusrhamnosusGGMSNETKQDVFEKALREWDDYVHSWGLQGEEAHGGCEFDPILIKYMKDYDAALPDETEKQKNCPYCHETDPQSKHAHYGKAISDKTEYFDFVRKTKLYRRVKARIKSPEDQHPKLCVTQMNRFREVSVVLDKAINYCPICGRKL
1118313..1118675                   PHAGE_Lactob_Lb338_1_NC_012530: hypothetical protein; LGG_RS05355; phage(gi226377665)     1.17e-40            LactobacillusrhamnosusGGMTETKRDVLEKLAECYAEVSDAYTSETGSPYYCGDEPNYLEEYGTSLPDNLPVIPKAVGDVIVKLKHKKFSLSGAMSYAAVVSLSPWMTFEHEDTFALAWVLGVWRVEKTGEIVKLEAEK
1118672..1118911                   hypothetical protein; LGG_RS05360                                                    N/A                 LactobacillusrhamnosusGGMKLVKGDIIRNPWVSDPKWRDFIFIRRGKKYVHTLRSNRGLIEDAMFDKKDVDERFTKVGHSVGFDTMLREVSGEEAEK
1118961..1119143                   PHAGE_Lactob_CL1_NC_028888: hypothetical protein; LGG_RS05365; phage(gi971752682)     3.90e-23            LactobacillusrhamnosusGGMKISPYRFMSWLGFILALASSFLPAKYMNFGAYKTFTGLTLIAVLFALWDISDAIREKQK
1119438..1119866                   hypothetical protein; LGG_RS05370                                                    N/A                 LactobacillusrhamnosusGGMELLSISDEKDREAVENILNKYRAERGFIKAPVNPKITSAWGDGTSASTVQRPLYAQQRLERQESARKFCEWCDSCIASMPKQSHQRLLRVRYCDGPETDTPDGDAMNILDISAATYTRRKKNALLAAAWYFGVTPRKSSEQ
1120894..1122042                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05375; phage(gi100059)      0.0                 LactobacillusrhamnosusGGMQWTDEQISDIRKLASEGFTRRETADKLGISYDALQGKAKRLGIEFQKPLKNEYDSDGTQSSETILKVVRGHKMTPREVLEAHGYDYTKWELVRATSNFWKQTPEATLYQSKIQIRPLVEAEQYESLMNDIITHKEPYQAKAPIFVESDRYLVIPAFDTHFNGHTFDLYAESLKRQLEIIQRGHYAKILLILGGDLAHVDNINSTTAKGTQLETTDLGETVNEMEQYFETLIEAIIKNANECEVMYAPGNHDPSVGYMFARLLKRAYSNQSNITWDISLKHYKGTMLGHNFIGATHGDKGKNNYLAKYLDEFGFMLGTAQNRELFTGHLHSEMSKDLGGFVQRQVSTRKPNDRWTDDLGVVAHKTFELVEYSDHNTTAIYYV
1122055..1122597                   PHAGE_Lactob_Lrm1_NC_011104: endonuclease; LGG_RS05380; phage(gi195661251)           8.89e-135           LactobacillusrhamnosusGGMSEKEIWKDIEGYEGLYQVSNMGRVRSLAHKDKYGRFTNGRTLADWCNSRGYHMVTLYRDGNAKKWWVHRLVATTFIPNQNGYPAINHRDENPSNNRVENIEWCTVLYNNRYGTHGKRIAEALERPIYAITSSGHRYFFSSATKAAELLGLSRGNVSTCLHGKRKHCHGFSFEWAGDPDD
1122590..1122910                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05385; phage(gi100060)      6.53e-58            LactobacillusrhamnosusGGMTRVWNTDYGNMYDVEFRIIEKLSREEKHMNAIIYTKPRCQKCRRTVLKLSRVMPVQTVTADADDYERFRKLGYRSMPVVTVYKADGTHDEWCDLRVDKIKQYTEG
1122947..1123480                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05390; phage(gi100001)      1.79e-99            LactobacillusrhamnosusGGMRLTAKQKKFVDSYIADSNATKAALEAGYSKRTARFVGAENLTKPNIKAAIDERMKRIESDKIAKAAEVLQYFTTVLRGEAKETIIVGTPDGAESVENEPSIKDRMAAGRELLKRYPGNDELLNAQLTKIITDIEKAKADVRKSKAEADIMEAKAKLLTDTDSQDRTVIVDDVPEDD
1123458..1124813                   PHAGE_Lactob_LL_H_NC_009554: putative terminase large subunit; LGG_RS05395; phage(gi148750837)     0.0                 LactobacillusrhamnosusGGMTSQKMIKLSKMVQPHFYPFWRSKAPYLILNGGRGSFKSSTVSLKLLMMLKRQAQQGHKANVIIIRENTINLRDSVYSQISWAIDMLKMTDEFVFNVSPMRITHRGTGSTFYFYGGDKPEKLKSNTVRNVIAVWYEEAANFKSAEVFDQTNPTFIRQKSPWVDQVQVFYTYNPPKNPYDWINEWIDSVRGDPDFFIDTSTYLDDDLGFTDEQQLKLIDKYKANDYDYYRWLYLGDVIGLGTNVYNMDLFHRLDEVPSNDPIRRLVFSIDAGHINSATTCVAAAVTAKNNLIVLDTYYYSPANQSVKKAPSDLVPEIKSFIDKVRSKYNHPVLKYTIDSAEGALRNEFVKEFGIRWHGIVKGKEADMIDFVSNLLAQGRVFYLDNDDNKIFISEHQQYQWDEKTAHSDDPHVIKEHDHTVDAFKYMVMDNAGQLKLSQANKARAFKNTSKYF
1124818..1126245                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05400; phage(gi100003)      0.0                 LactobacillusrhamnosusGGMAIILTVQGKGSITDGDVFIFPVDTAITGDDITNFISANDELARRKYLPAKKMYLGKHKILHEDAKDHGPDNRLVGNLAHYIVDTYNGFYIGIPPKITLDNTQDNTALQEWNDTNSVQDKLSEISKQAAIYGRALAFLYQDEDSNTCIAYSSPINSFIVYDDTVAHKAIAFVMYWHDEDNNLTGKVYLKDGIYSLDMVRFEGTAGFNPFSEIPAVEFFMNTERQGIFENVETLIDALDKVLSQKANQNEYFDNAYLVIRGMSLPEDDDGNPKLDLNGNQIIYSPDADSTNGVAEFLTKPDGDAIQEHLIDRLISMIYQISMVANLNDEAFSGNSSGVALQYKLLPMRNLAANQDRKFTQSLRSLYKIAFSVGTILPESKADEWQKLNFAFSRNLPENITDEADAASKLKGLVSDQTMLSTLSFVDDPKAEMKRIADETAKKAKDAAANSPSSPDFQKLLNGGGNDDNNDSTTDSE
1126211..1127203                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05405; phage(gi100004)      0.0                 LactobacillusrhamnosusGGMTTTTQQQIASNSAYWNKRTAAERKWIAENLKNDEAFNARIQEYFDKALSNIQKDIDSEFAKYAAYSNDSMAGARQAVMATDIKAYQAEAKRIVDDARKMYNGEPLKYSDFSKDVNDRLKLYNATMRINRLEMLKSEIGQEMLDAHMKVNVDLISKLSDDYQSEIKRQAGILGETVSKGGYTDLAKLLSKREGDYTFSQRIWINQDILKAELDELLTSATIQGQSPLKIARKLRGQVAETVNNHRYVTERIVRTESARIQTQAQLDSFHKFDYQYCKWVAEPSACDVCKEISEGGRTGEGIYRVDDVPDIPVHPNCRCSIAAYAPSDEAE
1127328..1127984                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05410; phage(gi100005)      6.33e-88            LactobacillusrhamnosusGGMIPKILMPMNLQFFAEDNPQGDPKDPVDPPKPKDGDPVDPPEGKKQGEPADPDPDGKHVYTDEQVNEIVKKRLARAEKEKQAAVDEAAKLAKMNADQKKDYELQKAQKERDELKSQLATYEMGKQARSMFEDAKLSVTEDDLKHVVTPEAESTETNVKWLIAHDQAVAERVRQELLKGSTPLDPSSNRKTKSLKDMTLLERSELQRKDPEMYKKLLTK
1128000..1129013                   PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; LGG_RS05415; phage(gi23455804)     1.49e-60            LactobacillusrhamnosusGGMPEFSGATAKLNLVEPKVFADYVLEQQTATNRLLSSGILTTDPIIQAQLLKGGTYVTIPTLQSLSGEAQTWNDTSDITVGNVDSYSAIAPQMYQAKAFGYTDFGQLSTGAPVAEQIAGQFASFWNIQDNKLLIAVLKNAFLNADLQAVKAYGMGTPAPLAAGDFIAALSRMGDVASPQLTKIVLNSAAVGAMRDQNLIDTIQPSNGGTPISYYNGIEIVEDDALPVAADGTTDAFIIANGAVSYGLANPENSYEVKRDSLGNGGQTAVINRRTLAMQIAGTSFTDVTKVAGLGYSAINASETSMYDLVGDPRNIGIVDYRFTIDKKFVVAGINAPKA
1129241..1129615                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05420; phage(gi100010)      1.22e-81            LactobacillusrhamnosusGGMADTDPVTLADLKTMMEIKTDTQDDVLTLIIKNTTQALRFKLGLRTDEAFPSELAYIALEVCVRRYNRRKNEGMTSYEQEGQSFTFKSNDFDDFADDISDWKEANGKNAKSLGTVSFISGYPKR
1129620..1129922                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05425; phage(gi100011)      1.64e-65            LactobacillusrhamnosusGGMRLDHEVTFWLDDEEYNPQTHQYGDVKKVATAVASVTDMGTDKSAQLFGNYAQKAKVIRLVEPITVNWSYLTIDDEATHYALNTDRVPLQNATLIVGETK
1129919..1130284                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05430; phage(gi100012)      2.48e-81            LactobacillusrhamnosusGGMSKASISYNMEIKGMDKLVAGLLSRAKMDVVKQIVKQQAAQLQTRAQQMTGTVYAHPTGATKRGIKLSLEDGGLTGIVGMSMEYNPYTENGTRFMRARPVLKPAFLYQKVQFINQLKQAAK
1130285..1130689                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05435; phage(gi100013)      1.04e-94            LactobacillusrhamnosusGGMIQITSPEQELYDYFYAFSQSSGYKTYDHLPMQQENAPYPFVIVGDIQVVPIATKTSLNGNVLITIDIWGDKKQRFTVSDMAERFFRAAIGQVLTDDYRFYGRVEDQSKEFTQDQSVPDTVLNRATLILNLNIL
1130701..1131303                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05440; phage(gi100014)      2.64e-124           LactobacillusrhamnosusGGMANELKVLEGMDVVALARKHSDQATVSGQIIPWQTSLSFDPSVDSDSTVTKDGNVATRSSASTDLEVEFLNNTAAIADVMYDSLFDGELLDFWILYRKRKNADGKYYAWYMQVTVQEDSSDNDPDDHSTRDVTFSVNGTPKRGWTTLDDETQEQVDYVFLGVGKVTDTDNTGGGTVWDKAVDPGTNTADTAPAGGTGTGA
1131390..1131722                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05445; phage(gi100015)      1.76e-56            LactobacillusrhamnosusGGMQLTINGKEYELNFGVRFVREMDKNMGAVMHGINFGMGVAKALAGLSAYDAAVLSDTIYSATVASKKRPSASEVDDFIDSNSDLDSLFKQVSDEMNSANAVKAVAKNMKA
1131827..1132180                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05450; phage(gi100016)      1.30e-75            LactobacillusrhamnosusGGMTLVEYELRMEAYQLKQVDRQNEIAQQAWMNQQVQATTGSKNPKPKFKTFDDFFDKKAAIDNVRSNYEPNYEVSQMSKTELKQKRAQVFAKRMAEFQRLKREGKIIPLSERKEGAHG
1132173..1135262                   PHAGE_Weisse_WCP30_NC_031101: hypothetical protein; LGG_RS05455; phage(gi100030)     5.57e-95            LactobacillusrhamnosusGGMADSFSVEAILSAVDRNFSGTFKNIANSASKVGDSFEKSTKPAGNFVSTVSKIAGAIGLTKVVGAIGAGVKSMAGELDASSKAWQTFESNMKFLGKTPAEISTIEKSLQSYAQKTIYSSSDMASAYAQFASVGVKGVGRLVKGMGGLAAATDDPKQAMKTLMEQGTQMAAKPMVQWADFRLMLEQTPAGMAAVAKAMGMSTKELVENVQNGKISTQQFFDGIEKAGNSKAFQKMATSYKTVGEAMDGLQETLANKLQPAWQAMSKVAVGAISGIIDKIGGINFDSVLASIGRFFSPFSTLILNIRTQLSNLGKGESMSGLSSILQGIGSVLHTIWDLVGSLANVAFVNLIGIAQKVGDAFNSVFGGGQLSGVFDGIKQAVTDFGYAAMGAITTVSDIIANLPWKAIFEGVKAALTGVVNVLKPIAALVKAAFANDIVKSFAVAILGAVGAFKVISLAVGGLSSVIGIFSRMIGPIRGVIAVVTNFGTIAKTAGGIWKAFGLILGMNPWVLLIAGIAAVVAGLVYFFTQTKTGQKLWSGFVSWLQGAWQGLVGVAQTVWNAISGAFTSAISGIQTAWSGITGFFSNLWTGITTTASATWTAFTTTLSVIWQGAVTAATAVWNALSTFFTTLWNGIVAVATAVWSTFGGSLTTIWNGIVQVATGVWNMLKAVIMGPILIVIDLLTGNWTQLSADLQLIWNSIVSAAGQIWNGLVTYFSGIWSLIQTYAMTVWNTLVSALEGLWNGAVSAASAIWSALSSFFSGLWNGIVSTTEGVWNGIASFLSGLWSGTVSTAEGIWNALPGFFSGLWNSITSFFSSAWSNIQSIVIGAATSIFNGAKAVWSGFTGVVSGIVNGIKGAFNALRNFSLADAGRAIMDSFFKGLKAVWGKITDFVGGIASWIRKHKGPISYDAKLLIPAGSAIMNGLNAGLTDKFSNVQRNVSSMAQAIADSAAVTMPAVNTSPFDASLQSLNNSVQGATLSSNLDVNYTRKQTIEVPLYIDGREVARATANPMQTELSRMTRMSNRRKGIV
1135331..1137253                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05460; phage(gi100018)      0.0                 LactobacillusrhamnosusGGMLIDGQYIEDLIPGYSTLQVSGRELLSQSIEKQTIGKSDGEFIQYVRNPSREIIVGYRLSAADNLSFRQAFYKLNDILHGDTHQVSFNDDLSVYWNAVLTDVDDVPKGRNAITSSFTLFVPDGIAHSVATQTFDNMPYKDIPLNLMAGTSADPVSVTGSGWNIQKLGSFNNPTVGKKYAATVLLGRADFAVSFQLWANDINGNRISLAGFPVTTQMGANQRSTIVCTWPDPGTTGAAQIEVTLAWAFQKTDVGTYQYLKAKLEEGTTYSTWSPNPADPEYYSDTITVHNGGTYPVEPVITATMHADNGVVAFVNDQGSVLQFGSPSEIDGVVRQKSERVYYFDFENEPNGIVMNDGALTYPNYRDNPATPNKQKGIFSYGRPDGYDNAIAYPNTERNPSNYWSGPSMSGKLAANSNGKQNGNFEWRNLIRFATMTNWAGRVEFNLTYEGKIVASLALYDQSTTDDQVMFEGKIHDGNDARMLFHEALPRDLYSRANSFAVISKMGDQLTFRIDRVGGGNVIRPFTIAGFGALPVDGWTVWFSAFSDVLEANMGWQDSYFDWVNVDYWTDVPNRFKEGDVVKIDVAKRVVSLNGAEDPTLQTVGNNWEGFQLLPGKNTIQVLQSDWAKPYTCQVEWQEAWL
1137253..1139760                   PHAGE_Lactob_Lrm1_NC_011104: host specificity protein; LGG_RS05465; phage(gi195661215)     0.0                 LactobacillusrhamnosusGGMDFYFTDRSWHLLGIATAGEGPIHIVNDTDDQLISAGARTYSGTILFTPETSAKVKSMAAYGNYVLYKDTRGKAVFMTIMESNHDPLLGETTFTAEDAGIDLINETVGPYKADKPMSIAEYINFFVTDSGFDIGLNEIPDLKRTLEWTGESDTALARILSVATQFDHAELEFSFQLNGTSVVQRLINIHKRIGADKRITLYVDKDINKIVTSGNIWDLYTAITPTGGTPEAKDGDTSEQKPITLAGYQWTDPDGRFVLTSDGILLDPVANQQWSRLLSGGARPDAAGAYINRVNTYEATTQASLLQSALSDLKKHNHPVVNYETDIARLPDNVDIGDTVHLADENERLYLSARLLELKSSYSMDTHTATLGDYLIETDQVAAQYRELAEKIKNIPKTVQYWPWVRYADDDKGTNMSAFPANKKYMAVVYSNKSSVPSDNPDDYAGKWALIKGADGADGVPGAKGADGRTSYFHTAWADDVSGKSGFTVSGGDGKKYIGTYSDFTQADSTNPADYNWALFKGDKGDQGPQGPQGPQGPQGVPGSKDVPYPYVQLSAPASPKKGDTWWHGTSYNDATALQYYDGSKWVDQSIQQAVLNIKKLQSIEIDSAEINSPTINVPFTHAPIEGGHILSTGKLALNGTSYTIDGTIEDTKGNPNGQRYHTELNPDGLLSYITQTDGTTKMDVSRISMGTLEFTHLASGLGNSATYISSTLDTVKVLQLANNNQMVWQGAMMPENGDVATMSVPLSQTLTGWLIAWSYFQNGVPTHNNYAFTLIPKAALVYNTTGANYLRVTLTMNEVGTTYKLLFYDDRNIVGNDENATGYPAKAVMTEVYAV
1139770..1140093                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05470; phage(gi100020)      5.96e-66            LactobacillusrhamnosusGGMEVDKVKAIFSTDEDGYITGYQQEFWDGTQWQTPFDDEKAIMIAPEELKKIAIGASKLADDGTVVIDTDKQAALDKAANQVTPTAEQKLLANLTLEVAQLKAAKSSD
1140086..1140217                   PHAGE_Lactob_iLp1308_NC_028911: hypothetical protein; LGG_RS14710; phage(gi971754935)     1.80e-24            LactobacillusrhamnosusGGMTNYDQCALLYSWGIDLTPYVPVMITPDQYKQITGSNYVASKS
1140247..1140540                   PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; LGG_RS05475; phage(gi195661217)     2.44e-60            LactobacillusrhamnosusGGMTFFGYTIGDWAEVISIIGVGVSAGSWLFKKIALDPLRSDIQVLSETINRQLKLHEQSLADLGQHLRTHDDELGSHSVRITRLEDHVGIKGEDNHED
1140530..1140943                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LGG_RS05480; phage(gi100022)      5.27e-77            LactobacillusrhamnosusGGMKINWTVRVLSVKFWLAVVPASLLVVQTVAAVFGYNWDFASLGKELTAVVNAVFALLTIVGVAVDPTTEGVSDSQQALAYPALITTKAAKIKALEDQIKALQADKEADQVTAASEVVPETSSAAPAESAPASFAPQQ
1140954..1142252                   PHAGE_Lactob_Lrm1_NC_011104: lysin; LGG_RS05485; phage(gi195661219)                  0.0                 LactobacillusrhamnosusGGMKLKTKLITLVVAFLAAISFALPSQANASKGDQGVDWSRYQGDNGVFGYSTDKFGISQIGGYSGYGTYEQTTYKTQVASLIAAGKRAHTYIWWQNIDNTNLAKQVLDHFLPEIQTPKGSIVALDYEAGSTNTATLLWALDYIRDAGYTPMLYGYKSFLVNHINLSQIASRYQLWLAEYPDYNVTTVPNYNYFPSFDNVGIFQFTSTYRAGGLDGNVDLTGITDSGYNGSTTTGSGKTYVKPATSTPATKAGQQANNTTLSQIKAGDNVKVNFGTTRWANGVAMPSWVQGKTYTVQQVSGSNVLLGGIMSWINRSNVELLTTTSVPSVSYGSTYTVQSGDSWWSIAYKYGMSMYTLASNNGKSIYSVIHPGDVLRVSGGYSVAVSSHTYYTVRYGDSFWSIASKYGISMYTLAANNGKSIYSLIYPGESLYIR
1142543..1142580                   attR                                                                                 N/A                 TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT
complement(1142872..1143159)       antibiotic biosynthesis monooxygenase; LGG_RS05490                                   N/A                 LactobacillusrhamnosusGGMKIINVTLHVKPELASDYQQFISQLVAGSRAEAGNLSYDHFQSLTDPDKYEIIEHWQDAEAVAAHNETSHFKQFLAGIDSFLDAPLEIIRMDYSA
complement(1143455..1144306)       PHAGE_Strept_315.3_NC_004586: putative mitogenic factor; LGG_RS05495; phage(gi28876265)     2.19e-13            LactobacillusrhamnosusGGMKTKLMKYLTPVLIVSLLLTGCSTQGTSKSTSPSTDPVADQTKLNNKTNSAISSLDEAIADKREEVSSLKATLDNSKPSTEASKTTAGTTDANTLANLDYTGQQEITVNNNDPAFSKNDLSTAKGAWAAYSDLDSLNRVTDANALLNRSLMPSAKREPLTWNPTGWHNKKTAHGWLYNRSHLIGYQLTGENNNPKNLMTGTQTLNSPLMLAHEMDIAYYLKQSNDHYVRYEVKPIFRGNELVARGVQMRAQSIGDNTIHFNVYIFNVEPGYTINYADGTSTKN

#### region 2 ####
1396189..1397385                   PHAGE_Acidia_virus_NC_029316: poly-A polymerase; LGG_RS06675; phage(gi1002166894)     1.30e-19            LactobacillusrhamnosusGGMQLDLNQPDFKAAIPILKKIEAAGYEAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFKRTVDTGIEHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVRHDGTIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLGFHIEATTKAAIAANAPLLKHISVERIAAEFNRLLVGIDRRAGMQDFLDTHLFAYAPKLAPHQAALQQFSELPNQAFTSIASGWTALIFMLKVAPESFLPAWKQSNDLMGLVDQAVTLLRKMPTPTAWDLYSAGSAAVAVVSEVAALMDHQFVPASLTTAYEALPIHSKKTLALTGRDLIQAGVRPGPAMGKILHQIEYRVVDGSLPNDSKKLLAAAIEMSREPS
1397510..1397965                   PHAGE_Clostr_phiCD211_NC_029048: hypothetical protein; LGG_RS06680; phage(gi981220948)     7.51e-05            LactobacillusrhamnosusGGMAEHVFEQLVFHFRNGDEWTVQHDELADVWISRVTTSYGRIHGGQIQEIHPCKSFKVEILPEADHVKSSDINTGSLEMGMFGRATKYQDIEKMDLVFDDQTKKQVQIYFPFKQKDPSGLDNEYQTSKLAKNGHLYIVIDAQHTVDDEYPRI
1398114..1400027                   PHAGE_Bacill_G_NC_023719: gp245; LGG_RS06685; phage(gi593777701)                     2.45e-12            LactobacillusrhamnosusGGMQTLTAQGLSKAYGDKQLFNQIDFLINEGERIGLIGVNGTGKTTLIRSLAGMESVDAGTIKTPKQYRISYLAQIPELDPDLPIMDAIYHGDSPVFQAIRQYERALAAYTKDPLNQAKTDAYTKADAKMTQEDAWSAETDIKTILTQLHIGDLTARVGSLSGGQQKRVGLAQVLIESPDLLLLDEPTNHLDFDSIAWLENYLSHYRGALVVVTHDRYFLDRVTNRIFELDRGRLFQYQGNYQAYVAKKAEQLEAEKSAGHKQAQLYRQELAWMHAGAQARSTKQQARINRFKALQKAKDEAPAPDQQLDPIQIASTRLGKKVIEMHDASLRFDQQVILNHFDWLVQPNTRIGITGQNGAGKSTLLNIIAGKQALDSGTIELGETVRLGYYTQLNTNLDPKKRIITYLQEVGEEVVQADGQRVSVTQMLEQFLFPRSMHGTLIGRLSGGEKRRLYLLQVLMRQPNVLLLDEPTNDLDIATLTVLEDYLDHFSGTVITVSHDRYFLDKVADQLLIFDGNGRIERAVGEFSDYLAKQKPQSAASKTDSASAKPKAPAKKAAPKQKSKLTYAEQIEYDKLQQELDELDEQLAKVKAEMAQVNGEDYVKLGDLQAQLDAINQDIDQKFDRFAELDQYVSSSER
1399464..1399476                   attL                                                                                 N/A                 CGCCTATATTTAC
1400044..1400994                   PHAGE_Staphy_SPbeta_like_NC_029119: thymidylate synthase; LGG_RS06690; phage(gi985761245)     4.86e-157           LactobacillusrhamnosusGGMLEQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFLHGDTNIRFLLQHKNHIWDEWAFEKWVKSDEYRGPDMTDFGHRSQKDPEFAAVYHEEMAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV
1401111..1401602                   PHAGE_Bacill_BCD7_NC_019515: dihydrofolate reductase; LGG_RS06695; phage(gi422936066)     8.76e-27            LactobacillusrhamnosusGGMTAFLWAQDRDGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTNVVLTHQEDYQAPGAVVVHDVAAVFAYAKQHPDQELVIAGGAQVFTAFRDDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRTVEDTNPALTHTYEVWQKKA
complement(1401738..1402379)       hemolysin III family protein; LGG_RS06700                                            N/A                 LactobacillusrhamnosusGGMRVSKSSHYEFNNEMFSAITHAFALGLAVTGTIALGIKGVNSGSQVELFSLIGFGVSLMLLYTASTAFHGFYFSKARHVLQVLDHSGVFILIAGSYLPYCLVAIGGKLGIGLLIAIWALCLGGIAYKLFFLNRFKHLETMIYVVLGWLCLVGMVPLWHHLGPVGFWLLVAGGVAYTGGAMLYLQKGIPYIHVIWHLFVILGSLCMYLSIYFYL
1402620..1403462                   PHAGE_Staphy_SPbeta_like_NC_029119: DegV domain-containing protein; LGG_RS06705; phage(gi985761237)     6.33e-25            LactobacillusrhamnosusGGMANIKIVTDSSVQLTPEEISQHNITVVPLTIMIDNTVYIDGETITREDFMDEMAAAQNLPKTSQPAIGTFTDVFDKLTADGSQVLSIHMTETISGTVNSARQAAQLVKGDVTVIDSQFTDRSMAFQVLAAAEMAEAGKDMPTILDKLKQIRDHTILVLGVTNLDNLVKGGRLSRVSGLISSFLNIKVVLQMEHGELKALRKGRGMKTINNFVTETISKMAKLTDIQSIGVSTAGAKEIGEDIGRRLAEVLPNVPILVRPTDPVIATHTGPGAFAITYYTD
1403725..1404570                   lipase/acylhydrolase; LGG_RS06710                                                    N/A                 LactobacillusrhamnosusGGMRTLKNFFISCGVLLLACLLAFGGWQLFGPVSSPSEVKVVANTPKHLQLTALGDSLTYGVGDATNNGGFVGLTKGELEATGQYQVTTKNYGVSGNTSGQILTRVNKQPKIRADLKRANIITVTAGGNDLMHVLQKHFLTLSEKQVTAGSVAFQKRLATLLTTIRKENPTAPIYVFGIYNPFYVYFPKMTAMTNSVKAWNQATQKTLQQFDRTYYVDIDSVLSNGETAANKASAKEALKEATSGDGNPLIFSQDHFHPNNAGYGQMTKQLMKQMKATKKAWE
1404575..1405216                   DUF2140 family protein; LGG_RS06715                                                  N/A                 LactobacillusrhamnosusGGMQAKKRSLQRNAAKQKAVRTGINWWKWLFLILVGLLLGTGIWFTKTALMPVKINSTPQTTMTSKDPVFTVKVTKNSANRIMAHYLKSYLKDSKIKYAVTLGTNEAALSGSFKFLGNAVKFQLTFDPLVLKNGDVLLKAKNLNIGALPVPISFVMSYIGNSYKIPKWVSLDSKAGTVVLKLTQFKLQNGMTLKANKLDLTNDDLEFAVYLPDEE
1405242..1405760                   PHAGE_Temper_phiNIH1.1_NC_003157: putative methionine sulfoxide reductase; LGG_RS06720; phage(gi16271776)     4.52e-20            LactobacillusrhamnosusGGMKKETAIFAGGCFWCMVEPFEEQPGILNVVSGYTGGHVANPTYEQVSSHTTGHTEAVEITFDADVIDYPSLLNIYWQQTDPTDAMGQFQDRGDNYRPVIFVKDEAQRQAAEASKAALEASGRFSDPIVTKIEAAKPFYPAEPEHQQFYAKNPRRYAMEHAQRQAFIDKNWKD
1405763..1406005                   YozE family protein; LGG_RS06725                                                     N/A                 LactobacillusrhamnosusGGMHRTFYEYLMTLRNPNDHSEVAEFAKNAFLDQSFPKHEKDYHRLSDYLELNGNYLPTMAIFDETYRDYEASESTGGDSYQ
1405974..1407416                   PROPHAGE_Escher_MG1655: carboxy-terminal protease for penicillin-binding protein 3; LGG_RS06730; phage(gi16129784)     1.06e-29            LactobacillusrhamnosusGGMKAQEAIHINKHKVPLWAVIVLFLVALGGGAAGGYALSYQQAQQSVLKTGVPKALAPVISAYETVTNNYYKQVSTTKLTDGAIKGMLSSLDDPYSVYLQNNDKTNLDDTISASFGGIGATIQQDHNSLSIASILPGTPAKKAGMKVGDVLLKVNGKDVSKKTVTQAVAKIRGKIGTTVAVTVKRGSKQATFSMKRKKITVDTVIGKLAPANKQVGVITISTFSEPTVKQFKATVKKLRKEGAKSFILDLRQNPGGMMTAALSISSMFSKNGQTVMQIEDRNGAKEVYKAGKKLDGGFKVTEKTAVLIDGNSASASEITAAALHQNSQIPLVGEKSFGKGTVQNVGEMSSNKELKLTVAKWLTPDGTWINHKGLTPDVKVAYPAAAKITLINATQLKPGDKGSDVKSLQQMLKALKIGSATVNGQYDDATQAAVKSFQEANELDASGTADQDTLAALAQKLSAQLTKDDPMVAAAVKEVTK
1407517..1407846                   hypothetical protein; LGG_RS06735                                                    N/A                 LactobacillusrhamnosusGGMIELEGFAVYPNKVERAKEWMSFLKGHQEAVNETLGPENIEVERIFSVSVNGRMYLCWYSEQTAPIPDVTRSTNPIDQVHVDFWKECIDEKAPRLEFKLENEFKRPGVN
1407909..1408457                   hypothetical protein; LGG_RS06740                                                    N/A                 LactobacillusrhamnosusGGMENKGVNLTTYWKYLNTIVVLIVFFLISLIFASHTMIQTLLGVGSLAWFLFFLIREIYLNNRRTQRTRFQVRLSHGLIVLGLLLFNTSVHQTVISTFGQTDMIQFWGEHEAAIHMNGRAYHLIWTKRSFHSTTYFYNLYERRGLFFYRVNSEVMSWTINPPEQRDYGAVRTFLYHGEEQGVK
1408543..1409253                   DUF4918 family protein; LGG_RS06745                                                  N/A                 LactobacillusrhamnosusGGMNEQANFATKVLTLHQRLASVKMTLPGCYQLVNPYSGKQKHAVDQITAAFYHKYFNDNHKRRLILGSSPARKGTAITGVPFEDAAELQAETGIAVAKFQIKPSSTNFLYDVMQQYGGKRKFYSDFYMSFACPLGLSKISAKGNVINSNYYETNVIKDRLMPFIVASLQEQIKLGVDTSVCYCIGSGENFKVLTSINQTYHFFGSIVPLEHPRYVMQYHFKDRARYIQKYVAALNCK
1409271..1410128                   ribosome biogenesis GTPase YlqF; LGG_RS06750                                         N/A                 LactobacillusrhamnosusGGMAIQWFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGDKPRLIILNKQDLADPVLTNEWVRYYQTQGFAAIAIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRKNIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDVVGLYGLNYFMAHYPAALKKAYHLTDTDLQAAPHDVLVKLTKTQGFGEEFNRMAERLIFDARQGKLGRFTLEKPGELDADAE
1410112..1410870                   ribonuclease HII; LGG_RS06755                                                        N/A                 LactobacillusrhamnosusGGMPTLSEYKTLLQADHVDPAVLTALEQDSRIGARKLLAAYQRRQDHQAAEAVALRYRSRYERKLWKMYSHVAGLDEVGRGPLAGPVVTAAVILPHQFKWPVNDSKQLTAHERDVLYPHILTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLPQERLIKGDANSISIAAASIVAKVIRDRLMVMYDRVYPGYDFKDNMGYGTKAHLAGLATHGVTPIHRRSFGPVRHCLKS
1410918..1411733                   PHAGE_Thermu_OH2_NC_021784: SMF family protein; LGG_RS06760; phage(gi526118339)      3.30e-29            LactobacillusrhamnosusGGMTLRDFLLAWHLATHQNPRLAVSLQQAILKKADLSTYQNDLKQKLTPAVARILSAARETPYLTFVDTAYPPRLREIPQPPSVLFYQGNLGLINQLTLGVVGSRKATNYSAEALTRLFPQLPPMTIVSGLAAGADSMAHEAALAAGLPTIAVIANGIDQVYPAKNRSLQRQISRVGLVVSEYPPGTAPQRFQFVARNRIIAGLAHGVMVTEAEIKSGSLITANYALQHNREVFALPNRFGDVLGAGTNALIQAGAAIVTGPETLMENLHFYP
1411979..1414063                   type I DNA topoisomerase; LGG_RS06765                                                N/A                 LactobacillusrhamnosusGGMADKKLVIVESPAKAKTIEKYLGRTYKVVASLGHIRDLPKSQMGVDVENNYKPKYISIRGKGDVIKSLKKDAKKASRVYLAADPDREGEAIAWHVSHILGLDPNAKNRVVFNEITKDAVKNAFKTPRGIDMDLVDAQQARRILDRLVGYSISPLLWKKVKKGLSAGRVQSVALKLIIDRENEIKNFIPEEYWSLDAEFQKGRSKKFSASFYGIKNKKMALKNNEAVQKVLSQIDKTKPFSVTNVVKKERKRFPAPPFTTSTLQQEANRKLGFRTRKTMMLAQQLYEGINLGGKLGTVGLITYMRTDSTRVSNVAKTETSHYLHEKYGEAYAAVKIRQGKLQEGAQDAHEAIRPTSTLRTPESLASVLDKDQMKLYRLIWSRFVASEMTPAIIDTVAVTLNQNDVTFRANGSQMKFEGFTKLYVSSRDSDEKDNVLPPLAVGDAVKMLKTDPAQHFTQPPARYSEANLVKALEENGVGRPSTYAPTIETIQKRYYVKLNARRFEPTELGEIVNSLIVEFFPDIVNIKFTANIESELDSIETGEANWVKVIDQFYKPFEKEVAHAETGIEKIQIKDEPAGFNCDICGAPMVIKMGRYGKFYACSRFPDCRNTKAIVKEIGVICPKCHKGQVVERKSKRNRVFYGCSRYPDCDFVSWDKPVGRDCPVCGHFLVEKKSKAGTQVVCPNNDYKEALQKA
1414233..1415552                   methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO; LGG_RS06770     N/A                 LactobacillusrhamnosusGGMPTVNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTGNFAELVCTNSLRANQITNAVGLLKEEMRRLHSIIMQSADATAVPAGGALAVDREPFSELVTRQLTNHPHIHVIHDVLTDFPAGITVVATGPLTAPGLADAIVALNGEAGLSFFDAAAPIIDASTIDNDIVYKKSRYDRGEAAYLNCPMNKEEFQAFYKALVTAEVAEGHDFEKMTVFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDPKTGKTPYAVVQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEHAQIVRYGVMHRNTFMKSPVVLEPTYASKRRGDLFFAGQMTGVEGYVESAASGLIAGTNAARLALGQTPIAFPQTTAMGAMAHYITHTSPSHFQPMNANFGIMPPLAVKVRNKKERNQQLAERALNDLATFQTELQGAHQS
1415668..1415680                   attR                                                                                 N/A                 CGCCTATATTTAC
1415753..1416649                   PHAGE_Thermu_P2345_NC_009803: XerD-like integrase; LGG_RS06775; phage(gi157265299)     5.28e-20            LactobacillusrhamnosusGGMKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKTVEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYILDQLIKQTSLIANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPKHN

#### region 3 ####
1528402..1528481                   attL                                                                                 N/A                 CACCATCAGGCTTACACTATCCCTGACTCGCTTGGGTTTGGTACAAATGCGACCCTTTTTCTCATCACCGATTCAATTTC
complement(1528627..1529796)       PROPHAGE_Oceano_HTE831: integrase; LGG_RS07245; phage(gi23097608)                    6.94e-54            LactobacillusrhamnosusGGMASIRSYKLDSGKRRWKVSVYVGIDPKTGRKKYVVKGGKLTRQDAIKAGRNLEKAVQNGELTVAPNPVKVARKFKDVYEEWLKSYKLTVRESSWSKTRDCFNLHILPDLGDMYIDKITPQDVQTAVNKWFKQSPVAFKRYFVHINRILTYAELRDYITHNPARRIILPRVQDKIGSTNDFWDRRQLEVFFNCINPDRELYKYVLFRILAYAGLRIGEAMALEWEDIDFKKRLISVNKTVSLGVHGKLIVNPPKTRASRRDVPVDSETINWLKRWRIEQPDYVYGYVRLSTHHQLLFTTKTGNRFRVDKPRMWLSTIIRNNNLAPVISLHKFRKSYISNLLIAGVAVSTVQKMVGHTDPRITLQIYARVHQEQEVEAAEKLAEYLKTGKK
complement(1529839..1530165)       helix-turn-helix transcriptional regulator; LGG_RS07250                              N/A                 LactobacillusrhamnosusGGMVMTAKEVHQGRIDRGLTQGELAKEVGLSVGSINSYEHGTRSITKAAESKISLAFKRIKPLNEQPAQATLLAELSDANTRFQWEGTLLRPTEVELIKVIAKTLVDQRK
complement(1531001..1531387)       hypothetical protein; LGG_RS07255                                                    N/A                 LactobacillusrhamnosusGGMEKLKLNRGMGQLVSPHGYALDATKKYVINLEKESEEQISILEAARMFDLPAILDWHKWLKDNGFDIAPTNDYVSKFFGKEPLWISEKSQGIVVMAENDDDYYVVLECSRQNEGFKYTQIIVTLGGCF
complement(1531578..1532690)       PHAGE_Lactob_phiAT3_NC_005893: putative lysin protein; LGG_RS07260; phage(gi48697278)     9.25e-178           LactobacillusrhamnosusGGMAAFSFALPTHVKAAKNDIGVDWSVYQGNKGKTVECDRFAISQIGGTQGGTIYNQSTYSSQIKAANDDGLRVHSYLWYGVGGSSDIGRQALDYFLPRIQTPKGSIVALDYEDGASESVEANTDAIIYGMQRIAQAGYTPMLYSYKPYIVAHVDYNRVLSQFPNSIWVAGYPDYQIRVLPLYSYFPSLPGVAIWQFTSMHAVGGLDGNVDLLGITDNGYSKQPAQATTVPSTPSQVTSSDTDYAQNGIFRPSVTLNIRTGDDTSYASIGTYAPGESLMYDHVYIHNGYVWARYLSYSGRYHYICLGVMGGESYGSRSSNYSAPSHTYYTVRSGDSFWSIASKYGVNMYTLAANNGKSIYSLIYPGESLYIR
complement(1532735..1533067)       PHAGE_Lactob_phiAT3_NC_005893: putative holin protein; LGG_RS07265; phage(gi48697277)     2.18e-43            LactobacillusrhamnosusGGMKDLIVQIAIAVIPILGAWVAKVLLANKQALTLVQVLEPLAQAAVTAAEQLGVTQAITGAVKKSQAVASVETQLKAMGFTKVDQQTIENAVEKAYSDLKNTIEATYPKGA
complement(1533080..1533313)       PHAGE_Lactob_Sha1_NC_019489: phage-related holin; LGG_RS07270; phage(gi418489822)     3.76e-07            LactobacillusrhamnosusGGMDEQTKMLMEIKEDIAQIKQQLTGLPSTDDKADKAYNASQDNARDISSLKKMVWSIWGVLGGTIGVTLFVYIIEKFL
complement(1533338..1533469)       PHAGE_Lactob_iLp1308_NC_028911: hypothetical protein; LGG_RS14905; phage(gi971754935)     3.05e-23            LactobacillusrhamnosusGGMTNYDQCALLYSWGIDLTPYVPVMITPDQYKQITGKDYVGGKS
complement(1533462..1533785)       PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; LGG_RS07275; phage(gi195661216)     2.06e-70            LactobacillusrhamnosusGGMEVDKVKAIFSTDEDGYITGYQQEFWDGTQWQTPFDDEKAILIAPEELKKIAIGASKLADDGTVVIDTDKQAALDKAANQVTPTAEQKLLANLTLEVAQLKAAKSSD
complement(1533795..1536728)       PHAGE_Lactob_Lrm1_NC_011104: host specificity protein; LGG_RS07280; phage(gi195661215)     0.0                 LactobacillusrhamnosusGGMQWFILSRDQHVLCAPSTDARNSLPIYNDTEDIVLTNNVALSSYTFTVDNTHPDAKKLAVGGYIAYINKYGQTKLCTLIAHDGDDYIQTWNAADIGMDLINEQADKVTYKEAHDFAYYANELLADTGWTLGVNEITTLTRTLSFDGQEDTKLKRIGDIANEFDGAELEFVVKMDGSTITEQVVNAYKEIGNGKTQQRFVDAVNLSALKTSGTIDSLHTAMAGYGSTPTSTTDTGQEQEPITFADIAYDDGRFFSPRGDKVVYDRVAGKTWARLGAFDPQNRSATKGYLVGNYSYDTSNPNELLNRTITQLKSVNTPKESYEADVVDIKADIGDYVQIAHHNYHPPVYLSARVLEVKNHYTVPNSDTAVFGNYSLLESDLDPRIVAMINGLAKQTEKYPWVRYADDDKGTNMSALPAGKKYMAIVWSNKTSVPSDDPSDYAGKWALIKGADGADGVPGAKGADGRTSYFHTAWADDVSGKSGFTVSGGDGKKYIGTYSDFTQADSTNPADYNWALFKGDKGDQGPQGDQGLPGKPGADGRTSYAHFAYANSQDGQTDFSITDPNRKYIGFYSDFTSGDSTNPSDYNWSLIKGADGADGKDGVPGKPGADGKTPYFHIAYADSSDGRTNFSLDTPGSRKYIGSYTDFTQADSTNPALYSWQLVQGPQGETGPQGPQGPQGPQGVPGSKDVPYTYIQLGTPTSPKKGDLWWHGKTLNDATALQYYDGSKWVDQSIQQAVLNIKKLQSIEVDSAEINSPTINVPFTHAPIEGGNILSTGKLALNGTSYTIDGTIEDTKGNPNGQRYHTELNPDGLLSYITQTDGTTKMDVSRISMGTLEFTHLASGLGKSATYISSTLDTVKVLQLANNNQMVWQGAMMPENRDVATMSVPLSQTLTGWLIAWSYFQNGVPTHNNYAFTLIPKAALVYNTTGANYLRVTLTMREVGTTYKLLFYDDRHIVGNGENATGYPAKAVMTEVYAV
complement(1536734..1538791)       PHAGE_Lactob_phiAT3_NC_005893: putative tail component; LGG_RS07285; phage(gi48697272)     0.0                 LactobacillusrhamnosusGGMKQAGIKITYAGVDITQWMYVQMVERDVGTNHVNTMQKVGISDGQMLQYMSRDVKTIVVTGIVMNDDLVPLRRSLAAAIDADEPQQLIFGDEPDKYYLAIVDSQPTFTEGFRSGTISISFVCPDGGIAHSVATQTADNTPYKDVPVNMLTDSGFESGKTPSGIVWGTSSDDDRTAEVNPAMPSYPTPFGTYMLRIENQSSDSSIDPDQYIVFPLPTPVTIKAGETWTYSYKYAAAGSATGQASDYLTTNGLSPIWGLSMGHGNRDTDGGQDTWHQFSATMTADSDITVTNYRFGFVKTYAGGGWICIDNIKLEKNDTASPWSPNPADPEYYSDTITVTNSGTVPVPVKVTSKFSSDDGFLGLTLNGRYYQVGNTKEVNGKTYDDSQMLVKTRPTIDKYILNDPSFAVIPADQGVMTQTGTVTIKPDPTNQLGITTPSDFGPNNHGPHGPSLIYKLPADSNGEVGAVNCILRMHAGLGALSLDSPSDTRQVGQICMTIYDASKNAMARILYSDMSQTTSDFTVRYDLNGTKVHEEDFSNTPGFTGHCYIRKSGSQFIFAWGGEAGGTAQTYTCEELADTKVMYVSFNFLQWADLPLPHYFGLIEWNFEKDYVDLYKDLPNYFKAGDIVTLDSSTNLLTINQYTDWDRVDIGSQPLLAPPGQSTLGIVVSPWANLPAVSTELREGWL
complement(1538792..1542958)       PHAGE_Lactob_phiAT3_NC_005893: putative minor tail protein; LGG_RS07290; phage(gi48697271)     0.0                 LactobacillusrhamnosusGGMAQQINATMSTKIALDLLSASESVKSLTAVVRSSQNAWKAQEAEMKSAGDAVGAAQAKYDGLGKSIEAQQSKIDALKAKQAELKGNTADVAQQFLKYQQQIDGANKQLASMQAQQDRAKQAMDYQKSGLAGLQQEYTAAARANQAYVTRLEAEGNQQEANKAKMEGYKSSIANLNEQLSKQSAELDKIASASGKDSDAWRTQKTRVDETATSLAKAKSSMTGLQAEMDKANPSVFNRVKEAISGTNKQAEKTPGLLHKIVEGGLITNAITSGWQTLKGKIEEATAAGMEYEKQQDQMNAIWLTLTGNAEKGQAMVDMTNKLAVKFGQDTDLVNELNQQFYHVFDNQPKTEALTSAFLTMGDAIGLSSDRIQQVGLDFTHTLSGSIVQLGDFNQLTDAFPMMADAMLEYEKKVQHNSQLTMTDLRAQMSAGKISAQDATNVIEELGQKYSKASDNLMQTIPGMTRVIKSRIPALIGDIEKPFLTAQNPVLGAISRWSQDKNTDKEFGKLGQAMSKGLSTITSAFAKAFDLSAGPKAMDKMMDKLSDAVTKVSQSIASHAGQIKTFFTTISTTGSAMAKISWAALTSGLKVLNPLLKSLGDFADKHPKLFGDLAAGFIALNLAGKVLPIAAITGFTKSVGGMYSGLKKLANSKFADMIKTNLSKLNSSALGKGMATITIAYDAISDIKDLTKAFSKGGTVGQKFSSVGESAGTLIGGGIGAFFGGPLGAAIGATIGKVAGKWAGDAAKKFTDGWNAKKKPADSWLGGLGWDARQMTNNVVKWWDGINKSTDAAQKKQQKQQEAANKQAQKDWNGFWNDVGKGWTGFWNDVNKKNSNAQQQQQKQQDAANKQIKKDWDSFWSNASKGWNNFWSDTVKNAQNGMNSTKSGIDNANTSIHKGWDSFWSDTSKNWNGFWGNVGKNAQNGMSTVHGWISDGNSKIDSGWRSLWSGLKSFFGNIWDGIKDAAANGMNAVINVINGAISGINWVWEKFTGKDALRKLSPVHFATGGTVTQKMHLVMVNDGTGPDWKELYQLPNGQIGMSQQRNATGLLPEGTRVFNGKETKAIMNMAGVEHYDLGGVIGGVGKFFSGAWDKLEAVGDWLANPIGKVTDLIKSSISGISGGVEMFSNLASGVINKLTGSVVDWFKKELAKLQDTLGANPGGSGVQRWKPYVIQALKANGFDASDYQVAAWMRVIQRESNGNPRAINLWDSNAKAGIPSMGLVQTIGPTFNAYKFPGHNDVYNGYDDLLAGIHYMKAIYGSGSSAFARVSGPEGYANGGLITQPIHALVGEDGPETILPLTKTSRAWQLLGQAVTNINHNLGNGAVAESESSGTDDLGKKLDNIADLLTKLSFVLQVGDDQFYPKVAPKVKQYNDRRDRFNAYWKGGTV
complement(1542964..1543194)       PHAGE_Strept_YMC_2011_NC_018285: hypothetical protein; LGG_RS07295; phage(gi399498730)     1.31e-05            LactobacillusrhamnosusGGMPAKAKINPAVKVYELENQLQDFRWMKKQAVMYFHWSMQDFDDADYFEMLEMMSAKDKKDRPVDPAIMWKQYQEKG
complement(1543172..1543522)       PHAGE_Lactob_phiAT3_NC_005893: putative tail component; LGG_RS07300; phage(gi48697270)     1.76e-75            LactobacillusrhamnosusGGMKIKVSQLSNRVHEVKTSNRNMEKMYDLQLLMAKADDVADMEPVEIIKMQRDMLHDSIDFLTTVLGLNKQEIEKLGDLEFADTIQAVNYTFERMMGMSDEDIDLAAKKQDASKSKD
complement(1543677..1544312)       PHAGE_Lactob_phiAT3_NC_005893: putative major tail protein; LGG_RS07305; phage(gi48697269)     1.34e-105           LactobacillusrhamnosusGGMATVGLYQIQLALVDAQQKLISGTGAGLGTDGIYTVDHKDLGAKTANITNLAGTIAKTYGNNNVQDVTVGTSEPSVALDINNLDFAIKQQIKGFVSDSKGGYTDENLKAHVALLITTQTIDRLHFVYYGFGDGIMTETAANIQTDAAAEQRVDDTLTYTALTTMAFNNQPYKIYSDIDPKFDKANMYKEVFGGYVLPASSTGSGTTTPAKQ
complement(1544313..1544693)       PHAGE_Lactob_phiAT3_NC_005893: putative tail component; LGG_RS07310; phage(gi48697268)     9.58e-68            LactobacillusrhamnosusGGMSAVDDAVAMLSQAGIANINAVKGNNLPQELVDNLNETVVLITDAANDPAAYGDNDFWALNQEVEVQIWYSQLLDSDPETIEIAMMKAFTHQHWQVAAVRQRTLDQDTQQLFNTFYFSRTKNIGGI
complement(1544690..1545109)       PHAGE_Lactob_phiAT3_NC_005893: putative head-tail joining protein; LGG_RS07315; phage(gi48697267)     6.16e-74            LactobacillusrhamnosusGGMDMDDALEEWLKQVSKAAELSISDQEKITKAGADVFAGKLQEATKEKHPDTKGSGGKYGHLSEDISSATGDIDKEHNGNSVAGFGNKAFVARFLNDGTKKIHGDHFVDNARDDAKDAVFAAEAEKYEAIIAKLNGGGDK
complement(1545112..1545456)       PHAGE_Lactob_phiAT3_NC_005893: putative head-tail joining protein; LGG_RS07320; phage(gi48697266)     3.41e-67            LactobacillusrhamnosusGGMVSSFKPSDFSRTIELGSPKSHTTGAGLNITSFVPAYSLHFKQQKRTLTQQYTLVGTRLDNSITIIVRHDARNIEQKQARLDGIVYDISDISPDDSNNAIRYDYLTLIKTTKGA
complement(1545446..1545736)       hypothetical protein; LGG_RS07325                                                    N/A                 LactobacillusrhamnosusGGMAEATIDPNKIASDLMSELNLDESELPTIISLVNTAINIINRSSDAPDSDTLTIPAIKTLTQATYYDRGLSNGMPKGLLMMLAHLQASSGGDNNGK
complement(1545808..1547736)       PHAGE_Lactob_Lv_1_NC_011801: protease-scaffold-major head protein; LGG_RS07330; phage(gi219563201)     9.87e-68            LactobacillusrhamnosusGGMENEDIRTFDVKIRAETGLANENSNNQAENGQNMDISGVAAAFNQPSIKGDFTEYVDQNALNNVDLSQVLLLYAHDFSNILARADAGTLQTSIQPDGLHFNAQLPDTQLGHDTYTNILNGNIKGMSFGFKIAPGGDSWSVNSQGNTIHTINKIDQVFELSLTPIPAYTETSVQVQRDLAQFLSSKKEVVKMAEKPEEKEEQSVDDQKRSIEQLQQQLSDLKAQVKTKVVIDKPEEEKRDATPDMASDETTAQPTSGDLVSMIATLQAAIQSLSQQLADQQAPSQMDDDVPDDDSNVVLDEKKPEQETAETEKRDDKPAEVTAEQDVKQENKRDGAKDMSKNLTADKVEDEEVRDFKEFLKTGEIKRDSTGFDSNAGEAVLPSQVLDIMSQPKDPAQLGGYVTKVQVSAPTGKIPVLSKASAQLVSAAELADNPKLANASLTQVNYDVQTLRGSLPISLEMTQDYPNITSLLTQYINDIKDQTEQHKIGAVLQTATPVAAASIDDIKDAFNVGLSNYTDRMFVVSESFFAAIDKQKDAEGRYLLQDSITSPSGKQLFGAPLVVVADDVLGKSGDAKAFIGSVKNFVVETVKGNINLSWQRNENFEQVLLAALRADFKAADTAAGKFITYTAPVATVPTTTSGK
complement(1547736..1548836)       PHAGE_Lactoc_bIL309_NC_002668: portal protein; LGG_RS07335; phage(gi13095846)        2.38e-99            LactobacillusrhamnosusGGMSIWNPYERMQKRSMTIPSTNLSSYIISGGQVLPNHLVDASTALNNSDLYAVTNLLSSDIASASFEVAAPFDKVINNPNNLISPFNFWQSAVVQMLLTGNAYIAITRDSNNVPMRLEMAPAAQVVVTLADSSADISYAVNWGDERGTINYPSANMLHFRLMASGSNGQQYIGISPLESIASQVNIQDYANKLTLSTIKNAINPSTVIKVAEGALSPEEKEATRKAFENANTGDNAGRPMVLDQLYDVQNLSINADVSKFLTSNDWSKTQIGKVFGVPDSYLNGQGDQQSSLDMTKSLYSNTLRRYVKPIESEMGAKFGVPVNIDESSAVDADNDLLISQIQKLLSGTTPAITPLQAQQMLAKRGVI
complement(1548833..1549015)       DUF1056 family protein; LGG_RS07340                                                  N/A                 LactobacillusrhamnosusGGMSKLIMLKELLPTVLFVSGLIAIVTSAYLFNSTIGTLVLGSVLLFCGWLLTPTSKAGGSR
complement(1549139..1551010)       PHAGE_Lactob_Lv_1_NC_011801: terminase large subunit; LGG_RS07345; phage(gi219563199)     0.0                 LactobacillusrhamnosusGGMPDWTVERAYKQQRDNGAYDKIADKYHDPMTAYAFQVLEGTTMAGQDIKLACWRHLQDLTRISSDDFPYTYDLGKCHEVLNFASICPDVDTGKPLPLMLWQKALLCSSQGWRNEKGERRFHRVQFSVARTNGKTYITNILLAYDYLIASDGMYNQDMGYIAPVVAQSKKGWRYIQLTFDRLGELTDVKRTYKTQQIKTLDDVVRSKKTRNQLLRLSHESGQFDSYHFRLAVADESGDDGRIGTIKENIGKITSGQVQVYDHQFWSISTAYPDSTSSFYLDEKLAREAMQKDYSRDLDDVLLINYSQDSEDEVDDPSSWTKSNPILELKKDTMLPSLVSERDKKKLDGTLDEFKNKNLNMWIKASDNRYLNIHDIENAVADKPPFSISGHDVYIGFDLSKLADDTAVAFIYPYQLAGETHYYIQQHSWVPLSHTGGSIAEKEKQDGINYRQAEQLGFATIAKGRFGYIDEDSVTTWIMSYIEENGLNVKFFVFDRWGTSDVLDKLSQEEPFPLMPLKQTSDKLDKPTHEFKKAIREGRVHYDDDPILKYALTNAVIVGSSAGIKVDKDRATSKIDAVDAVIDAFSRAYYAFSDFDPDADNDKNRSPLSGMSDEERHKFLMNAAF
complement(1551025..1551489)       PHAGE_Lactob_Lv_1_NC_011801: terminase small subunit; LGG_RS07350; phage(gi219563198)     1.45e-32            LactobacillusrhamnosusGGMGRKMKITQDASDRADQRARTEELAKKTSGMEPLQVTPPRFLQGYAYTAWRELVPLLNAAGLCKQVDKPLVIALCQQIQLSRQAYEDINENGLSTGSRKNPAAAILNDATTKIKSLSDALGLSPQARASIVLDNQDDDDGPTLKQALKAGDKSW
complement(1551971..1552531)       PHAGE_Clostr_phiCD38_2_NC_015568: recombinase/resolvase; LGG_RS07355; phage(gi333798162)     3.29e-48            LactobacillusrhamnosusGGMIYGYARVSTDGQNLSVQIQTLKQAGAIRIYSEKYTGTTMVRPVFKEMICLMQPGDKLIVTKLDRFARNTKEALEVIQRLFDKNISVMILNLGTIDNTPTGRLVFTVFSAFAQFERDMIISRTQEGKQYARAHNPHFKEGRPNTYSEDDIRKAFRLREKNLSYRRIRRITGISETTLKRRFKQIES
1552937..1553686                   glycosyltransferase family 2 protein; LGG_RS07360                                    N/A                 LactobacillusrhamnosusGGMIGSSLQPYIYSLNIFILCMSALGLLRMFITFWFANVYDYQFIKYRYAHHRRIKRFSPSISVIVPAFNEEKAIIQTLASICRSTYKKISIVVVDDGSSDNTAILVKEFIEVHPDNDIKLIQQPNSGKSVAINNALFNYDNSVLTMVLDADSLLKEDAIEKMVKWFLNPKIVALAMNVKMLTLPTFIGACQRFEFISAYRGKCAEHVLKTLYIIGGIGSTFRTDKLKNIGGYDTNTPTEDIDLTLKLLSR
1553752..1555248                   PROPHAGE_Xantho_33913: IS1478 transposase; LGG_RS07365; phage(gi77747808)            1.17e-18            LactobacillusrhamnosusGGMQASFARNAYALGFTLALIADLSEELIMVYRQKATQLSLESFGSALGTPLSPDNEWVQYAELIPWAKLEEAYQLQFPSKTGRAAKPFRLLYGATLIKLKKGLTDRQVVDDIRDTPAYQYFIGLPEYRAKKPFEHTTLVHFRQRLSAISDLIRNITNDFTRERLEADLPEGTHVLISDATAVPVKIKYPQDTTLLNQSRLNLEQMVTDLAHGLGVEIPRTYRREAKGKWTAFSRKPRRQNKERRKQLQAQLQYIRRDLRYVAELLAQGGQLTDWQAQRLEVIKQVYEQQLFMFENHTHHVENRIVSLQQPYIRPIVRGKAKQSVEFGAKIDCSMLDGVIDVERFDFNSFNESTDLEVTLDHAFDLVGEYPDEVLVDTLYRTRDNINLCKKLGIKLNGPKLGRKPKHVDPKQRKADVSAENRRGAIERKFAFLKGSLGLDLVNTRTAESLVVTVDSAIALANIDLLLKLFSVPISIVVEQGGLHYQINYKVTEIRPETAT
1555343..1555789                   hypothetical protein; LGG_RS07370                                                    N/A                 LactobacillusrhamnosusGGMIKQRYRWKYGRFIAFVKYHNLFFNMDKKFSKMLTFFQLPLAVFQELFMLVEPFVYLYLLFVTIYFQDLGMFIAMVSYVFVVISLSVTASRESLKSKLLLLCTAPFNFFLSYILTIVEYVSLINSILHLHSIVDYNNNHANWSHVERL
complement(1555905..1556183)       hypothetical protein; LGG_RS07375                                                    N/A                 LactobacillusrhamnosusGGMDNDFEKDVEYVAPGYQPMGQILTPETVIESSEDLLEYRQIINDRLMTRGCDTGLITIQLADLNNEAISQLTDEVKDAGWQVVMEDKNLYIQ
complement(1556176..1556616)       PHAGE_Lactob_Lv_1_NC_011801: HNH nuclease; LGG_RS07380; phage(gi219563244)           2.42e-31            LactobacillusrhamnosusGGMHEQSWQAKKADYRRSKLAMAIKANKSKEYDKKQRDPKAVAFYHSKQWQAVRDYVYARDLATCQVCGNVVQDRKIVDHIICRRLCSSKQALDSGNLWTLCYKCHFRKTKLEQLIADKPNGDTILKHLNKQWWTKVLKEKKEDKQNG
complement(1556715..1557119)       PHAGE_Lactob_phiAQ113_NC_019782: single-strand DNA binding protein; LGG_RS07385; phage(gi446730277)     4.82e-21            LactobacillusrhamnosusGGMNSVNLVGNVANSVKSGNNSATAMLAIHRIYSQAKDKQTADFVPIVAFGKMAEVLSNYASKGTRIGISGRIRTGQYERDGKTEYTWQVVAEHIYLLSSKPHNDASKDSSANLSDDLINSLSPKLSGLKDSDLPF
complement(1557106..1557873)       hypothetical protein; LGG_RS07390                                                    N/A                 LactobacillusrhamnosusGGMLSEKTIKELISTPAFLSNASKLAGMLHMSRQDASQELLIELLSHRLHKWSDKDVEIAIAAESPSLKWKVKYARKDLVRKQAKSASREVEKAQMVAHMTRQASNEAETLEALERLQELFKNKATKSWAESLLRVAQKETMVRFHQTPRQFNNKLVKVCKYARQRQPKQSNSHTKELKLLKEWDDLITDPDTSDSDVQAFIGEHEEYIDNIIDDPQVAFQGHLIKDFAHAGKDKYILVNLMAKREQELKEKSNELS
complement(1557874..1558080)       hypothetical protein; LGG_RS07395                                                    N/A                 LactobacillusrhamnosusGGMKNKENVTLDTFSILNSAGWFLTIANIAGITQLSWANILNYWLALLGIAVTMGIVTAIIGLRTKGGEK
complement(1558141..1558743)       PHAGE_Bacill_CampHawk_NC_022761: HNH homing nuclease; LGG_RS14105; phage(gi557478907)     2.97e-17            LactobacillusrhamnosusGGMKVGIITMTSTVNKESNLEFFIKATLKARIKAHDEEEFKQCKPPYSRYKISRNGVVIGPRSNRPIKQYINNSNYVVVGVTKDGSNKHTTVTLSHLLGLAWIPNPENLSDVDHIDDNRLNNALYNLRWVSHRDNLVKEHRRQLMKRANGRPVRKVNDDSSFEVYSSIKEAAEAVGLSNTSVAGSANGTLHLNKPYHFVFAR
1563014..1563093                   attR                                                                                 N/A                 CACCATCAGGCTTACACTATCCCTGACTCGCTTGGGTTTGGTACAAATGCGACCCTTTTTCTCATCACCGATTCAATTTC

#### region 4 ####
complement(2039796..2041172)       PHAGE_Oenoco_phiS13_NC_023560: hypothetical protein; LGG_RS09600; phage(gi589286272)     6.63e-13            LactobacillusrhamnosusGGMIKKIWSKVSRDSRYSALGIAFLVLLVEHIFMREYVGDAIAVFSHLIDHSSLLSVLYWRYSSWTSRVLIEAPLIRLSSGMHTTTWAVIDTLMWMLLIWSLMALTHYKHNYLVISLVFIYPIIQMQSAGWMATTINYLWPLAMGSYAMVLLDRIYNQKKVGVVPALLALFALAFATNFETFGIMYLCLLTYFSLAMCYFRRFTILGFIFTVLQYAISIANIVFALYSPGNKLRLVTETKDNMLDFSGLTVVDKFVIGVNHAFSEMTDNSFLFLCFAFMIFLVAVTSQRRSKVLVATGIVPLAFVLTRTILKPIVIIYSPKFDQLFNDVADQARVGATNYFNFTSYVPFVLYSLIFAAVLIVLLNAFEKLSTGLFLDVVLISGLLTAVAVGFSPTVYASGPRTLLFLNFSFIYIIVRIYTEQYKYISPKKLLNVFLRWGTAVTAVFFVISNLISIGLTQG
complement(2041414..2042790)       PHAGE_Oenoco_phiS11_NC_023571: hypothetical protein; LGG_RS09605; phage(gi589286659)     9.70e-12            LactobacillusrhamnosusGGMIRRIGAKIRDNSQLQCLSIAFFVVTLQHLFIREYTGDAATAFSHYLDRTTLLATLHWRYTTWTSRIFIESVLLKLSQNMHIKVWIIIDILMWMLLLWSLMKLTRGRHNYLIMSLVLMIPLSLMNGAGWMATSINYFWPAALGTFALVSLYKIYYHEKANIVTGLVTLLGLAFATNFETYGVMYLCILSFFAVAMILKRRVSTLGVLFTASQYLICIANVGLALIAPGNKARVLVETKFRMLDFANLGPFDKLVMGYTHTFSELTDKNFFFFLFTIMLVVIALFLKSKSRRILVAAFIPFSFVLARTIIAPIAKVYLPEFSALFKDAAEQQRIDALNYFNVMYYIPFLLYVVLLISILLVLCNAFKNFNFGIFLTVVFVSGLLTTVAVGFSPSMYVSGPRTFLFLDIILIYIITIMYEKSKPFISQNMYLNFIAKWGLIAFTVFSVINNFIAIGISYS
complement(2042787..2043302)       hypothetical protein; LGG_RS09610                                                    N/A                 LactobacillusrhamnosusGGMTDSFKRKVISWLIIGTGLLVALVCVVVQYRSHAVPKVEPVTKFSIMPKKRVKYSIETLGLKNRDYTEISGWIFVKGQEPQKFVTSLVLYTKDSKEVQIFPLKMEDRNDVAKMRGKAGVYNYMNSGFHGYIPIKYMTNEKEKKYKIGFLVANKQQTDLVKTGIDYKVGGVK
complement(2043567..2044409)       PHAGE_Entero_phi92_NC_023693: Phi92_gp064; LGG_RS09615; phage(gi726646997)           1.26e-43            LactobacillusrhamnosusGGMKILITGAQGQLGTELRHLLDARGITYRATDAKDLDITDEAAVNQYFADYQPDVVYHCAAYTAVDKAEDEAKALNQLVNVDGTRNLAKAAAKVDATLVYISTDYVFDGDSKEIYTVDDQPAPRNEYGRAKYEGEQQVQKYLKKYYIIRTSWVFGEYGHNFVYTMLNLAKTHKELTVVDDQYGRPSWTKTLAEFMTFAVDQHLDYGIYHLSNDNSCNWYEFASAILADKDVTVKPVSSAEYPQKAWRPRHSILDLSKTKATGFEIPTWQDALKDFLKIVDK
complement(2044469..2045494)       PHAGE_Synech_ACG_2014f_NC_026927: long tail fiber distal subunit; LGG_RS09620; phage(gi100279)     6.53e-45            LactobacillusrhamnosusGGMKLMITGGAGFIGSNFVHFVYKNHPDVQIMVLDKLTYAGNKANIEDVLGDRVKLVVGDIADKELVDKLMGQVDTVVNFAAESHNDNSLINPDPFLHSNVIGTYTLLEAARKYDVRFHHISTDEVYGDLPLREDLPGHGEGPGEKFTINSRYNPSSPYSSTKAASDMLVHAWARSFGVRATISNCSNNYGPYQHIEKFIPRQITNILNGIKPKLYGTGKNVRDWIHTNDHSSAIWDILTKGKIGETYLIGANGEQDNKTVLELILKLMGKPTDYYDQVKDRPGHDMRYAIDASKTREELGWKPQYTDFEEGLADTIKWYTDHRSWWQDEKSAVEAKYKQNGQ
complement(2045497..2046069)       PHAGE_Entero_phi92_NC_023693: Phi92_gp065; LGG_RS09625; phage(gi726646998)           2.66e-44            LactobacillusrhamnosusGGMSLKVIPTKLKDVKLVETDVFGDNRGFFTETYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHLIMSEKDQHHPQLKDAENNFVYGEI
complement(2046083..2046955)       PHAGE_Entero_phi92_NC_023693: Phi92_gp066; LGG_RS09630; phage(gi726646999)           7.81e-125           LactobacillusrhamnosusGGMKGIILAGGSGTRLYPITEAISKQLVPVYDKPMIYYPLSTMMLAGIRDILVISTPRDIDRFQDLLKDGKQLGLNISYKIQEKPNGLAEAFIVGADFIGDDSVCLILGDNIFYGSGLSKLVQRSAAKTTGATVFGYQVNDPERFGVVAFDEQHHVQSIVEKPEHPESNFAVTGMYFYDNQVVDIAKNLKPSPRGELEITDVNKAYLERGQLDVELLGRGFAWLDTGTHESLHEAASFIETVQKRQNLKIACLEEVAYRMGYIDRDQLRKLAQPLKKNDYGQYILRLADEEA
complement(2047322..2047771)       lysozyme M1 (1,4-beta-N-acetylmuramidase); LGG_RS09635                               N/A                 LactobacillusrhamnosusGGMYASGPFFTSVATAVGNTNAKALNGQHFTAFEEDKTAKGTFVKVKLNDGSVYWTDKRALAIDKYDKILSDKKVDYSGVINQSSSADGLYVSGPFFTSVATAVGNTNAKALNGQHFTALEEKRTAKGTFVQIKLANGSLYWIDKRALDIA
complement(2047790..2049043)       PHAGE_Lactob_c5_NC_019449: putative endolysin; LGG_RS09640; phage(gi418488198)       6.23e-23            LactobacillusrhamnosusGGMKNFTIGDSSVPRNDVVDVSDWQSWMTQNDYTQLHNLGIKGVVVKVTEGTYYTNGIAANQIKFARNAGMVVSAYHYATFDSASAAVAEANYFANRLDSLNVGKNVTVVADIESDAVSGDIAGNLKAFWQTMTQRGYQNHVAYTMRYYKHLDALTSTTGKDRTWIAQYPYTPSANSLWDQDFGAWQFSSTGHLPGHSQNLDVSIDYQGLFTRENGAASTSTAPSSVSYDPIVSQKTVSYSGSLDQSVRADGLYASAPFYTSAATSVGNTAAKAYNGAHFTALQEETTAKGTFVQIRFNNGSVYWIDKRALAIEQYDTVTSKTPVSYTGSLDQNSRADGLYTAGPFFTSVATAIGNTNAKALNGQHFTALEEDTTAKGTFVEIKLNDGKIYWVDKRALAIDRYDKVISTTAVSYTGSFD
complement(2049080..2049283)       hypothetical protein; LGG_RS09645                                                    N/A                 LactobacillusrhamnosusGGMKKGALWTSAAIASSFLCSTLILGTPTFAAENSGATISAQSSLNESQMSGGMQKSVLDAGNNTTTTG
complement(2049343..2050839)       PROPHAGE_Xantho_33913: IS1478 transposase; LGG_RS09650; phage(gi77747808)            1.16e-18            LactobacillusrhamnosusGGMQPLFARNAYALGFTLALIADLSEELIMVYRQKATQLSLESFGSALGTPLSPDNEWVQYAELIPWAKLEEAYQLQFPSKTGRAAKPFRLLYGATLIKLKKGLTDRQVVDDIRDTPAYQYFIGLPEYRAKKPFEHTTLVHFRQRLSAISDLIRNITNDFTRERLEADLPEGTHVLISDATAVPVKIKYPQDTTLLNQSRLNLEQMVTDLAHGLGVEIPRTYRREAKGKWTAFSRKPRRQNKERRKQLQAQLQYIRRDLRYVAELLAQGGQLTDWQAQRLEVIKQVYEQQLFMFENHTHHVENRIVSLQQPYIRPIVRGKAKQSVEFGAKIDCSMLDGVIDVERFDFNSFNESTDLEVTLDHAFDLVGEYPDEVLVDTLYRTRDNINLCKKLGIKLNGPKLGRKPKHVDPKQRKADVSAENRRGAIERKFAFLKGSLGLDLVNTRTAESLVVTVDSAIALANIDLLLKLFSVPISIVVEQGGLHYQINYKVTEIRPETAA

#### region 5 ####
complement(2086239..2088389)       PHAGE_Klebsi_K64_1_NC_027399: hypothetical protein; LGG_RS09795; phage(gi849122351)     9.97e-143           LactobacillusrhamnosusGGMANFNDPFFNHDMDDVFNQMLQGMGKGESARYVVNGHEMTPDEFAQYRATGQLPKQGDEIPVETTGEQAVKKGGILEKLGRNLTQEAKDGLLDPVIGRDHEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQAIVKGNVPESIKDKQIWSIDLSNLEAGTQYRGSFEEKIQNLIKEVKAAGNVLLFFDEIHQILGAGATGGEESGGKGLADIIKPALSRGEITVIGATTQDEYRNTIMKDSALARRFNDVTINEPSAADTVKILEGVKKLYEQHHHVQLPENVLKAAVDYSIQYIPQRSLPDKAIDLIDMTAAHLASKHPIVDKVELEKQIKDLNAQKDAAAKAEDFEKAANLKKEIADKQHQLEGTNNEKPVVATPNDVAAAVERLTGIPVSKLGASDIERLKGIGKRLKGKVIGQDEAVDMVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYSDRTAVSKLIGTSAGYVGYNDNKNTLTEQVRRNPYSIVLLDEIEKADPQVLTLLLQVLDDGRLTDGQGNVVDFKNTVIIATSNAGFGNEALTGEKEKDEDLMKRLAPYFRPEFLNRFNGIVEFSHLTKNDLGKIVDLMLEDVNKTLAKKGITLTVTDAAKDWLIAQGYDEAMGARPLRRVIERNIRDKVTDFYLDHLKAKKLQADLIDGAIIVSEVQPASDKPKKEASGAK
2088454..2088738                   hypothetical protein; LGG_RS15120                                                    N/A                 LactobacillusrhamnosusGGMHKILLLSTRSQGQKPACKGLGCTGQNPTSTSKATYTPVSKRPCSRSTKKHSQALWQYFRVVLIHLLALILLRLFLVYIMYYSMKLALTQPEC
complement(2088780..2089544)       tyrosine protein phosphatase; LGG_RS09800                                            N/A                 LactobacillusrhamnosusGGMIDVHCHMLPGIDDGSKDLTTSLELAQAAVADGITHALMTPHHMNGRYTNHAADVIRMTDEFQDELDRRNIPLTVFPCQEVRINGQLLEAIDHNDILTCDVSGHYVLIEFPSDDVPLYTQNMLFEVMQRGMIPVIVHPERNTRLMKHPGLLYQMVERGAFAQVTASSYVGTFGKKVQQFSEDIIDAGLAHVFASDAHHLPGRSYEMSAAFKRLTRKRGEKKARIFEENARALVNGDPLVRFNERKVEKRLLSRY
2089701..2090594                   transcriptional regulator; LGG_RS09805                                               N/A                 LactobacillusrhamnosusGGMKKILVRVLLVVLVAALGFGGFVYYMVHNSTSQIYSYNKKTNKSSDDKTTSKKPVAYLLLGTDTGELGRSYKGRTDTMIVMVLNPKSKTTTMVSVPRDTKVDFDDVTIKINAAYSYGSSDTAMEAVEKLLNIKLDGYLLVNMKGLEQMVDAVGGVTVTSPLSFDYEGKSFVKGQSYNLSGSDALKFSRMRYDDPQGDYGRQMRQQLILTSVIGKLKKNPTTVLSQSFLDAVGKNVRTDVSLGSVKNLAMDYRDAGNTIKSDQLHGTGQNIDGQDYEVMSDSELTRVHDVIQNALNAK
complement(2090693..2091718)       PHAGE_Synech_ACG_2014f_NC_026927: long tail fiber distal subunit; LGG_RS09810; phage(gi100279)     1.59e-44            LactobacillusrhamnosusGGMKLMITGGAGFIGSNFVHFVYQHHPDVQIMVLDKLTYAGNKANIEDVLGDRVKLVVGDIADKELVDQLMGQVDTVVNFAAESHNDNSLINPDPFLHSNVIGTYTLLEAARKYDVRFHHISTDEVYGDLPLREDLPGHGEGPGEKFTINSRYNPSSPYSSTKAASDMLVHAWARSFGVRATISNCSNNYGPYQHIEKFIPRQITNILSGIKPKLYGTGKNVRDWIHTNDHSSAIWDILTKGKIGETYLIGANGEQDNKTVLELILKLMGKPTDYYDQVKDRPGHDMRYAIDASKTREELGWKPQYTDFEEGLADTIKWYTDHRSWWQDEKSAVEAKYKKNSQ
complement(2091721..2092293)       PHAGE_Entero_phi92_NC_023693: Phi92_gp065; LGG_RS09815; phage(gi726646998)           2.58e-44            LactobacillusrhamnosusGGMSLKVIPTKLKDVKLVETDVFGDNRGFFTETYTREKFIEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHLIMSEKDQHHPQLKDAENNFIYGEI
complement(2092307..2092954)       PHAGE_Escher_phAPEC8_NC_020079: putative glucose-1-phosphate thymidylyltransferase; LGG_RS09820; phage(gi448260372)     2.00e-83            LactobacillusrhamnosusGGSYKVQEKPNGLAEAFIVGADFIGDDSVCLILGDNIFYGSGLSKLVQRSAAKTTGATVFGYQVNDPERFGVVAFDEQHHVQSIVEKPEHPESNFAVTGMYFYDNQVVDIAKNLKPSPRGELEITDVNKAYLERGQLDVELLGRGFAWLDTGTHESLHEAASFIETVQKRQNLKIACLEEVAYRMGYIDRDQLRELAQPLKKNDYGQYILRLADEEA
complement(2092968..2094464)       PROPHAGE_Xantho_33913: IS1478 transposase; LGG_RS09825; phage(gi77747808)            1.16e-18            LactobacillusrhamnosusGGMQPLFARNAYALGFTLALIADLSEELIMVYRQKATQLSLESFGSALGTPLSPDNEWVQYAELIPWAKLEEAYQLQFPSKTGRAAKPFRLLYGATLIKLKKGLTDRQVVDDIRDTPAYQYFIGLPEYRAKKPFEHTTLVHFRQRLSAISDLIRNITNDFTRERLEADLPEGTHVLISDATAVPVKIKYPQDTTLLNQSRLNLEQMVTDLAHGLGVEIPRTYRREAKGKWTAFSRKPRRQNKERRKQLQAQLQYIRRDLRYVAELLAQGGQLTDWQAQRLEVIKQVYEQQLFMFENHTHHVENRIVSLQQPYIRPIVRGKAKQSVEFGAKIDCSMLDGVIDVERFDFNSFNESTDLEVTLDHAFDLVGEYPDEVLVDTLYRTRDNINLCKKLGIKLNGPKLGRKPKHVDPKQRKADVSAENRRGAIERKFAFLKGSLGLDLVNTRTAESLVVTVDSAIALANIDLLLKLFSVPISIVVEQGGLHYQINYKVTEIRPETAA
complement(2094533..2094760)       PHAGE_Entero_phi92_NC_023693: Phi92_gp066; LGG_RS09830; phage(gi726646999)           1.11e-30            LactobacillusrhamnosusGGMKGIILAGGSGTRLYPITEAVSKQLVPVYDKPMIYYPLSTMMLAGIRDILVISTPRDIDRFQDLLKDGKQLGLNIS

#### region 6 ####
2948929..2948943                   attL                                                                                 N/A                 TGGGTGGTCAGGGGA
complement(2949041..2950198)       PROPHAGE_Oceano_HTE831: integrase; LGG_RS13805; phage(gi23097608)                    7.24e-66            LactobacillusrhamnosusGGMASIKKYATKDGKEFWRVQVFAGNDLQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEEEKPKPVFFRDVYEEWYGNYINTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKAVKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMSKNPAKAVVLPHHDDLAGDKPENFWTKEQMNHFFACIDQENHFDVFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDKGHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFLQLGINTMQPNQLLFTNTKNGYQSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESEATAALAKYMQN
complement(2950316..2950927)       PHAGE_Lactoc_bIL311_NC_002670: repressor; LGG_RS13810; phage(gi13095660)             8.34e-15            LactobacillusrhamnosusGGMTKLLEPNSHLSLGERIKSIRISKGETMEEFALSVGLTSSGKSAVSRWERGLSAPSADTMKKIANHGGISVQFLVTGKPAFEDLPEDQQMELRKQRDEWLHNLEVNSENLWTELFSDDYVKKLTWQEKTFLENSMRFVQLMKPERQNVAIMKFSSIVAGIIRARTHDYSADQIEEMKTDFAKELSDIIDISQKSPTQKIQDYE
2951006..2951254                   PHAGE_Lactoc_bIL311_NC_002670: ps3 protein 14-like transcriptional regulator; LGG_RS13815; phage(gi19343481)     4.38e-14            LactobacillusrhamnosusGGMNVDVNRKERAIMQRIKGYRVMLNLSQQDVAKELGISRQSYWSKENGRTSFNDKEKTKIRDLFRKTGIPVTIDSLFFDGKVD
2951279..2951554                   helix-turn-helix domain-containing protein; LGG_RS13820                              N/A                 LactobacillusrhamnosusGGMALMKAQITLPADFDQILQERIHREVVRVMNETKQQPMQKKLNIGQAAAYAGVARNTLLSWTKKGLLVQVVGGVKRINTADIDDYMNNHGK
2951622..2951843                   hypothetical protein; LGG_RS13825                                                    N/A                 LactobacillusrhamnosusGGMNLFSKEEIALDHELGNLIDDIQLNVHAIAEDSTVTVDGKYISNSELAVTTAKELLRVSEILKLYENEDDADD
2951954..2952145                   hypothetical protein; LGG_RS13830                                                    N/A                 LactobacillusrhamnosusGGMARMASTRLGFQWHDYVQADAECDRYWAFKKAERRSLHEATKKSPRVVPQGEKKTSEKIYIDF
2952190..2952462                   hypothetical protein; LGG_RS13835                                                    N/A                 LactobacillusrhamnosusGGMMKNVSNSTKAPDLGEASFDLSTAKGLLEALRDQFDTMEGSVVSYRNNRTENAAILAYSTNRSFYTWMALLKAIQEYVESSLATIDEVNK
2952459..2952647                   hypothetical protein; LGG_RS13840                                                    N/A                 LactobacillusrhamnosusGGMMKEDYYTTAQALLSDTSAMVNILRHQINDEQQSALADTVADMIIDARRLLLEGDVADGRRA
2952631..2953458                   PHAGE_Lactoc_bIL310_NC_002669: hypothetical protein; LGG_RS13845; phage(gi13095885)     6.07e-26            LactobacillusrhamnosusGGMVDVLKVALGYQQHGFAVYPLAPETRTPLAGSHGYKDATKDPEQAKKWWGEHPNYNIGLGLDGVLVFDIDMGHKSGANGNDTLAKLSAEGRADQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDLFSKNGEKTGLDYIATGVPVFPSIRENGMYQPLKGHKITKLAPVPQWLLDEIQRVSHPNPVFGGSTVYRGKRWTGKLLDEIVNGTSTGNRNDFLTKIAGKMFFTGAEPQTVYNLLFTTNDNYLDTPLAESEVNKIFKSVLKAEERRRAVG
2953451..2954875                   PHAGE_Staphy_2638A_NC_007051: ORF003; LGG_RS13850; phage(gi66395453)                 1.14e-72            LactobacillusrhamnosusGGMVKAMPEDIKQEANKVVNVDFTGQEQWRNDLKLDGNGGIRKDSVVNIQLLLDNDQAFANVVAWDDFSEMLIKTKGVKGLPIRKGFWTDEDDAVVRSYMERKHNLLFSKQNEQDAMVVVGKEHSINPVKDWIEAEQWDGTPRAERYFIDYLGAEDSEYTRAVTRKWLAGAVKRVYQPGCKFELVPILEGKQGLGKSTAARNLFPTKFSDSLKSMGKTDEDYKKLQGNWIMELGELSAMKKTEIESAKSFISAQSDSYRGSYSHYVYPHLRKCVFIGSTNQQDYLKDATGERRFFPIRCGVTKPTKTVWRNEESVPKINHDIHQVLAEVKTWVDAGESVFADDKLMQLAKPYQQEAETVDPMKEAIEDFLNMKVPSNWENLSLSLKASFFHTHIDHNGDVATWLQQHLDAGELQPLQQTTTREIMEVVFDKSVDRYLMGRTGSEAKRIKLIMDNMDGWDRERVRINGQRSRGYVRK
2955155..2955577                   PHAGE_Strept_315.2_NC_004585: hypothetical protein; LGG_RS13855; phage(gi28876240)     5.13e-22            LactobacillusrhamnosusGGMLYPESTWARFEQEFPIPEKYRKYYEYKNWHIEPKSSDLSQFEQDHPFAFMLMPEDMQNALYLWTKGLAKRKTINSDYTSYGIKHLFTDLPGGFYITNGMMKGALLAAGFEIADYAELNWRANISGRSIKEQIKLAPHIS
2955608..2956033                   PHAGE_Staphy_phiPV83_NC_002486: phi PVL ORF 63 homologue; LGG_RS13860; phage(gi9635713)     3.49e-20            LactobacillusrhamnosusGGMQMSVPLHICMHPGCRRMIPFNQRFCEEHKQDKSKQATNQERMQYEEKELRFYKSTTWTKLSKSFRLRNPTCASCLKRGIIRQAVLVDHIEPIKTAYGWQHRLDESNLQSLCQTCHNAKTAREVAQRRMRSPDRSTPAPKF
2956158..2956628                   PHAGE_Staphy_phiPV83_NC_002486: phi PVL ORF 1 homologue; LGG_RS13865; phage(gi9635714)     1.30e-21            LactobacillusrhamnosusGGMGAPLKSVTNLSAHLSKKQLADRVASEKALFTYKELQVQPPTWLDDYAVTEWHRIVPLLKKDIPVSELDAALIASHCQAYSDIQKAAELVQEQGMMVETTDSVKANPAVKMKLDATNQMMRIDEVLGLSVYSRAKLALKSETKKKPDDPFAELVSS
2956625..2958328                   PHAGE_Lactob_LF1_NC_019486: bacteriophage terminase large subunit; LGG_RS13870; phage(gi418489385)     3.51e-140           LactobacillusrhamnosusGGMNYATEYTDKVLSGEIVAGKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPARDGSPLKLELFQKYLISELFGWRDKETGNRRYDRAYISMARKNGKSFLMADLGALYLLMENKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRAVPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGPMYKEYKFVSKILTGREQADRYFIAIFEQDSKAEAFAPETWEKSNPLLANAERAKTMRPSLQADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIEPPDTREKDVYIGLDLSKSSDLTSISWLVPEDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLESGMIDYDEVLRFILDLIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIPTTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMNAYTIAMDQNKESEVADNDFYSSDDFGF
2958294..2958473                   hypothetical protein; LGG_RS13875                                                    N/A                 LactobacillusrhamnosusGGMTFIRAMTLVFNLQTVLLILGLICMVAGIWWLFGFGVGMLAVGTALISVAVIINFNKGR
2958478..2959662                   PHAGE_Staphy_phiRS7_NC_022914: portal protein; LGG_RS13880; phage(gi560185961)       1.39e-71            LactobacillusrhamnosusGGMSFFTNSATQPRDDNSDPFLDALVSMTSNDSGLYVGIGALRNSDVFTAVRVIAGDLATNPIEYSDKRISVLLNKAPNDHMTAWGFKFALATNMLLNGNSFARVTKNPSGQVTGFELVPNSQMVVKQDDTTGIISYEYTPDSGRSQRLNASEVLHFKCFTQDGYKGLSPLYSLHDEVGVQKSGHALLKGFFNSGVQGTGILKVNKTQLDTKAKENIRNKFEAANSGDNALKTIILDNDMDYKQLEVNTDVLNLVNSSDWTTKQIAKAFGLPLDRLGIESEHSNAVQSNVMYLQNTLIQYFTCFTSEMDAKLSTGDNRFSFNTDKLFSADPATMQELAVKGLQGGVLTTNEARAKLNLPPIPGGDEIMASLNYTPLSNLTSYQNTRQRSDPENESR
2959649..2961208                   PHAGE_Entero_IME_EF4_NC_023551: major capsid protein; LGG_RS13885; phage(gi589893039)     6.42e-45            LactobacillusrhamnosusGGMNQDDVEKRLNPNAGLTAKADDSQGQDDPDTKKQDDTTNGPKKLSGYAVVFNSPSKDLGGFKEVVDPHAFDHVDLSDVYMVSNHDFSQVLASTKAGTLTLNVDDKGLQFEATLPDTTTASDAYNNVQAGNLSAMSFTFNAAPDGDTFTKDDSGQVIRTIKQVKSLFDVSLVAIPAYDDTNVQVDKRSYTEWLKDHVEDPEQQLPPTEKRKGVNHMTEKTIIDKEEHTESRAYEDYIRSMGEQRDGLTTTTAGAVVPKEVINDVWDLKQSDYDLAKYVTVKQVGTPVGTYPIALTNNGVLATKKELADVADVDANMFKGVDYKVATRAGKIYLSNELVEDSEVDIVAEVKNQLKKLVQNTDNSNIISVLTGKSTTGDNFKHLTGTGLDDLKKTFNIELDPALSLSVIVNQDAFNYLDTLKDSQGRYLLQPSITAPSGKQLFGAPVIVVANKVLPTDKVGTYRIIIGDFSQAIFLAQKNEVNTQWERFDSYSQGLAVVIRNDYEVVDPDAARIVDITPVKA
2961270..2961560                   PHAGE_Entero_EFAP_1_NC_012419: head-tail joining protein; LGG_RS13890; phage(gi225626391)     1.79e-11            LactobacillusrhamnosusGGMSVTTEDLKKALRISHSEDDAMLSAYLLTAKQFVISAVDQTLTDENFGDDPRFDFAVSLLAQHWYINRGVDGATYVPDSVVSMIQQLRGVDYATGK
2961544..2961885                   PHAGE_Lactob_A2_NC_004112: putative head-tail joining protein; LGG_RS13895; phage(gi22296529)     8.50e-18            LactobacillusrhamnosusGGMPLVNSISQLNEPITLVSYTMGNVNGVPVSNVRKEHFTTWALVLSQYLSEVRASVGTKLEDTVTFVVRYDQPETILNSWRIEWQGKKYDIVKLTPDTAKKQWTTIIGKPVANK
complement(2962560..2962808)       GlsB/YeaQ/YmgE family stress response membrane protein; LGG_RS13900                  N/A                 LactobacillusrhamnosusGGMHFLWALIVGAIIGAIAGAITSKGKSMGWFANIIAGLVGSAIGEGLLGHWGPQLAGMALIPSIIGAIIVVAVVSFFVGRSKD
complement(2963058..2963130)       tRNA                                                                                 N/A                 GGGTGGTTAGCTCAGCTGGCAGAGCAACGGACTCTTAATCCGTGGGTCCAGGGTTCGATCCCCTGACCACCCA
2963058..2963072                   attR                                                                                 N/A                 TGGGTGGTCAGGGGA
complement(2963336..2964256)       PHAGE_Cronob_vB_CsaP_GAP52_NC_019402: putative ribose-phosphate pyrophosphokinase; LGG_RS13910; phage(gi414087562)     2.24e-20            LactobacillusrhamnosusGGMHELKLFSLNGNRPLAEKIAAEVGLPLSPARVNHFADGEVQIELPESVRGADVYVIQSVSDPVNENFMELMIMVDALRRASAHHINVVISYYGYARADRKARSREPITAKLVANMLEMDGVDRIVAVELHADQIQGFFDIPVDHLKAHRLIGDYFRKLNLGDNVVVIAPDHSGTKQARALAEELHTPIAIVDKRDQEHIGVIGNVEGMHAIVIDDLIDTGDRIVDSYKALSAAGALDVYAAATHGVFSRGAVDRIKHLGLKKVVITDTIQLDPKHQFEGLDQISVGPMLGKAIKLINSNQSIHVLF
