Submission Results
Sequence Name: Not Available
GenBank Accession Number: 297622181 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 297622181.PHASTER.zip
gi|00000000|ref|NC_014208.1| Klebsiella oxytoca KOX105 plasmid pKOX105, complete sequence. 54641, gc%: 51.82%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.8Kb | incomplete | 40 | 10 | 36042-44926 info_outline | PHAGE_Staphy_SPbeta_like_NC_029119(3) | 50.91% | Show info_outline |
Region DNA
>1 36042-44926 ATGCTTGATATAACCACGATTACCCGCCAGAACGTCACTAGCGTTGTGGGCTACTACTCTGATGCAAAGG ATGATTACTACAGTAAGGATTCATCATTCACGTCCTGGCAGGGAACCGGAGCTGAAGCCCTCGGCTTATC CGGGGACGTTGAATCAGCCCGGTTTAAAGAGCTGCTTGTCGGAGAGATAGATACCTTCACGCATATGCAG CGACACGTGGGTGATGCCAAAAAAGAGCGTCTGGGCTACGACCTGACGTTTTCAGCGCCTAAAGGGGTAT CCATGCAGGCGCTGATACACGGCGATAAAACCATTATCGAGGCTCATGAAAAAGCTGTTGCCGCTGCTGT GCGTGAAGCTGAAAAACTCGCGCAGGCCCGGACGACTCGCCAGGGGAAATCAGTAACCCAGAATACCAAT AACCTTGTCGTCGCTACTTTTCGCCACGAAACGTCCAGGGCGCTAGATCCTGATTTGCACACCCACGCTT TTGTCATGAACATGACCCAGCGCGAGGACGGCCAGTGGCGCGCGCTCAAAAATGATGAGCTGATGCGTAA CAAAATGCACCTGGGCGATGTTTACAAACAGGAGCTGGCGCTGGAGTTGACCAAAGCCGGTTATGAGCTG CGTTACAACAGCAAAAATAACACGTTCGATATGGCCCATTTTTCAGACGAACAGATTCGCGCTTTTTCCC GCCGGTCGGAGCAAATTGAAAAGGGACTCGCTGCAATGGGCCTGACGCGGGAAACCGCCGATGCTCAGAC GAAAAGCCGCGTCTCGATGGCGACGCGTGAAAAGAAAACAGAGCATTCCCGTGAAGAAATTCACCAGGAA TGGGCCAGCCGCGCCAAAACGCTAGGCATTGATTTTGATAACCGTGAATGGCAGGGACACGGTAAACCTC TGGAGGCTGATATTGCGCGCAACATGGCCCCGGATTTTACCAGCCCTGAGGTTAAAGCTGACCGGGCTAT CCAGTTTGCAGTTAAGTCGCTGTCAGAGCGCGATGCCAGCTTTGAACGCCAGAAGCTGATTCAGATCGCT AATAAGCAGGTGCTGGGCCATGCCACAATGGCCGATGTTGAAAAAGCGTACCTGAAGGCGGTACAGAAGG GCGCCATCATCGAGGGCGAAGCCCGGTATCAATCAACGCTGAAGGTCGGTGCTTCAGTTATGGCCGAAAC TCTGACGCGCAAAGAGTGGATCGACTCGCTGACGAATAGCGGGATGCGTGCGGATAAAGCCCGTTTTGCG GTAGATGATGGTATTAAAAACGGCAGGCTTAAAAAGACCAGCCACCGCGTCACTACCGTGGAGGGTATTC GCCTTGAGCGTTCCATTCTGACTATCGAATCACGCGGCCGGGGGCAGATGCCGCGACAGCTGACCGCAGA GATTGCAGGCCAGCTGCTCGCCGGGAAAACCCTCAAGAATGAGCAGATGCGCGCAGTTACAGAAATTGTG ACGAGCAAAGATCGTTTTGTGGCCGCACATGGTTACGCCGGTACCGGTAAAAGCTATATGACGATGGCCG CTAAAGAGCTGCTGGAGTCACAAGGGCTGAAGGTCACGGCGCTGGCCCCCTATGGGACACAGAAAAAAGC GCTTGAAGATGATGGATTACCGGCCCGCACCGTTGCCGCCTTCCTCAAAGCGAAGGATAAAAAGCTGGAT GAAAAATCAGTCGTATTCATTGATGAAGCCGGGGTTATACCCGCCCGGCAGATGAAACAGCTGATGGAGG TGATCGAGAAGCATAACGCTCGCGCGGTATTCCTGGGGGATACGTCACAGACGAAAGCGGTAGAAGCCGG TAAGCCTTTTGAGCAGCTGATTAAAGCAGGTATGCAGACCAGCTACATGAAAGACATTCAGCGACAGAAG AATGAAGTTTTGCTTGAGGCGGTTAAGTATGCCGCTGAAGGTAATGCCGCGCGCGCCCTGAAAAATATCA CCGGCGTGAACGAACTGAAGGAAGAAGCGCCCCGACTCGCTCAACTTGCCGATCGCTACCTGTCTCTGTC CTCAGAACAACAGGATGCCACCCTGATAATCTCTGGTACGAACGCCTCACGCAAAACCCTCAATGACTAC ATCCGGGGCAATCTGGGGCTTGCCGGAACCGGCGAAACGTTCACGCTACTTGACCGCGTGGATTCGACAC AGGCGGAACGCCGCGACAGCCGTTATTTCAGTAAAGGGCAAATCATTATCCCCGAACAGGATTACAAAAA TGGTATGAAGCGGGGCGAGTCTTACCAGGTTCTTGATACCGGGCCGGGCAACAAATTGACGGTTGAAAGC AGCAGCGGTGAGCAGATCGCTTTCAGCCCGCGTACACACACCAAGCTGTCTGTATACCAGGCAGTCAGCG CCGAACTGGCGCCGGGCGATAAGGTCATGGTAACGCGTAACGATAAAACGCTGGACGTTGCCAACGGCGA CCGCTTCACGGTGAAAACCGTGGAGGGTGAAAAACTGACGCTTGAGGACAAAAAAGGGCGCACGGTTGAG CTGGACAAAAAACAGGCTTCTTATCTTTCCTATGCTTATGCAACCACCGTCCACAAATCCCAGGGGCTTA CCTGTGATCGCGTGTTGTTCAACATAGATACCAAATCGCTTACCACTTCTAAGGACGTTTTTTATGTTGG TATTTCGCGTGCGCGTCATGAGGTGGAAATTTTTACCGACGATAAAAAATCTTTGGCATCGAGCGTGAGC CGCGACAGCCCGAAAACCACGGCCGCAGAAATTGACCGTTTCTTTGGGCTTGAGGCCAGGTTTAAGGATA TTGGCCGCGATACCAGTTTAGAAACCCGATCAGCTGAAAAAGGTCTGCCAGAAGCCACGGGGGAAAGCAT GGCGTTTAACCAGAAACCCGATGAACATAACATGACAACCGGCACTGATTATCAGCCGGTGAGCAACGCA GAGGACGCCTTTCATCTTAAGCAGAACCCTATGGATGATTCCGTTGGCCTGCGGCGTCATGAAGCACAGC AAAATGATGCAGAACTGGCCCATGATTATGCTGCTGCCGACGATCAGCAGTGGAGCGCGCAGGAGTATGC CGATTACGAGCATTATGCCGAAGCATCAGACTACGACTTTGACAGCAGCATTTACGACGATTACGCCATG CCGCAGACGTCTCAGGCGGAACAGAGCCATACCGGAAAAGAACACACCCATGAGCATGAGCATGAAGAAG GGGGCCATGAAATCTGATGGAGCAGACCGACAAGCGCAAGCAGGATAAACTGAAGTTCGACCGGGTAATT AATCTGGCGCGCAGACTGCCGCAACCGGCGATCCATGACTTACTACGCGCGCTGATACTGCCAATTCAGG CCGATTACTTGCTGGCCGTTGGCACGGAGGGCCAGGACGCGCGCCCGGACATGAACGAGCGCGAGTTCTT CTTCACAAAAATCATCTGGGCGATGGATTACACGCACATGAAATCACTCAGGCTTGCAGCTGAAGATTTT CCCCTGGCGCTTGCGACGGCCAAGATCCTGCCGTGGCCGTGGGGTGAATCAAGCTACCGGAGTGCTTTAG CCGATATAGGGGTTCGAGGTTCAATCGTGTAAAAAACCACGTTAAGGCAATAATTCATTGTTTGAATTGA AATTTAATGGCCTCAACTCTCCCTTCAGAATATTTTCCGGCAGCGTGAACGTATAATGTCCCAGCATGTT GATATGACCGTACATCAGTGGCGACAGGCGTGAGATATGCTCGTCTTCCGGGATCTCACCAGCGCTGCGC AAATGTGATAGCGCTTCCTGCATATAAAGCGTGTTCCACAATACAACTGCGTTAGTGACAAGCCCCAGCG CACCCAGTTGATCCTCCTGCCCCTCACGGTAACGTTTTCTAATCTCACCACGTTGGCCGTAACAGATCGC CCTTGCCACGGCGTGACGGCCTTCTCCCCGGTTAAGCTGAGTCAGTATCCTGCGACGATATTCTTCATCA TCAATGTAGTTGAGGAGGTACAGCGTCTTGTTGACCCGTCCCACCTCCATAATCGCCTGCGCCAGCCCTG ACGGACGGGAACTTTTTAAAAGCGAGCCCACAAGTTCTGAGGCGTGGACTGGGCACTGTTGCAAATAGTC GGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTGCACATGAACCCATTCAAAGGCCGGCATTT TCAGCGTGACATCATTCTGTGGGCCGTACGCTGGTACTGCAAATACGGCATCAGTTACCGTGAGCTGCAG GAGATGCTGGCTGAACGCGGAGTGAATGTCGATCACTCCACGATTTACCGCTGGGTTCAGCGTTATGCGC CTGAAATGGAAAAACGGCTGCGCTGGTACTGGCGTAACCCTTCCGATCTTTGCCCGTGGCACATGGATGA AACCTACGTGAAGGTCAATGGCCGCTGGGCGTATCTGTACCGGGCCGTCGACAGCCGGGGCCGCACTGTC GATTTTTATCTCTCCTCCCGTCGTAACAGCAAAGCTGCATACCGGTTTCTGGGTAAAATCCTCAACAACG TGAAGAAGTGGCAGATCCCGCGATTCATCAACACGGATAAAGCGCCCGCCTATGGTCGCGCGCTTGCTCT GCTCAAACGCGAAGGCCGGTGCCCGTCTGACGTTGAACACCGACAGATTAAGTACCGGAACAACGTGATT GAATGCGATCATGGCAAACTGAAACGGATAATCGGCGCCACGCTGGGATTTAAATCCATGAAGACGGCTT ACGCCACCATCAAAGGTATTGAGGTGATGCGTGCACTACGCAAAGGCCAGGCCTCAGCATTTTATTATGG TGATCCCCTGGGCGAAATGCGCCTGGTAAGCAGAGTTTTTGAAATGTAAGGCCTTTGAATAAGACAAAAG GCTGCCTCATCGCTAACTTTGCAACAGTGCCGGAAATAGAACTCGAATCACTCGAGCATCTGACTGACCA TACTCAACTTCTTCAAAAGTGCATTCATCCAACAAGGGTGAAAGCAACGCCTGAATGGAAAAACGGCTGC GCTGGTACTGGCGTAACCCTTCCGATCTTTGCCCGTGGCACATGGATGAAACCTACGTGAAGGTCAATGG CCGCTGGGCGTATCTGTACCGGGCCGTCGACAGCCGGGGCCGCACTGTCGATTTTTATCTCTCCTCCCGT CGTAACAGCAAAGCTGCATACCGGTTTCTGGGTAAAATCCTCAACAACGTGAAGAAGTGGCAGATCCCGC GATTCATCAACACGGATAAAGCGCCCGCCTATGGTCGCGCGCTTGCTCTGCTCAAACGCGAAGGCCGGTG CCCGTCTGACGTTGAACACCGACAGATTAAGTACCGGAACAACGTGATTGAATGCGATCATGGCAAACTG AAACGGATAATCGGCGCCACGCTGGGATTTAAATCCATGAAGACGGCTTACGCCACCATCAAAGGTATTG AGGTGATGCGTGCACTACGCAAAGGCCAGGCCTCAGCATTTTATTATGGTGATCCCCTGGGCGAAATGCG CCTGGTAAGCAGAGTTTTTGAAATGTAAGGCCTTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTG CAACAGTGCCTTTTTTCCTGCGGTGTACGACGCCGACGCCGCTCAGGTCCTGATAACACTCCAACCATCT TATCGTTCTGACTGGTATTAAACATAGTTCCAAGACTACCTCTTATTTTAAGAGAGTCGAAGTGTCTGGT GATCTATGGGGCCAGTCTAGCCCTCTTCCAAGTGTAGGGAGATATAGTCAAAGTTTGCTTCTCCGCCGAT GAGTCCGCCCTGCGTCGGATAGTCCGATTTTTTACCGGCGAAGCACGGCTCTCCTAACCCTATCTAAAGC GAATAACTTTTTTCAACAGGGCCGCGTGCCAATGCAAGAGCGATAGGCGCTCTACGCGCCAATTTGACCA CTTAAAACAGGTAAATTGAGGGGTTGTAATGTGTTGATGTAACAGGCTTTTATTTTAATGTCTTGGCATA TGTATAATGGTAGTCTAGCCCTCCTTTCAACAAGGAGTACTCATGGAAACCTACAATCATACATATCGGC ACCACAACTTTTCACATAAAGACTTAAGTGATCTCACCTTCACCGCTTGCACATTCATTCGCAGCGACTT TCGACGTGCTAACTTGCGTGATACGACATTCGTCAACTGCAAGTTCATTGAACAGGGTGATATCGAAGGC TGCCACTTTGATGTCGCAGATCTTCGTGATGCAAGTTTCCAACAATGCCAACTTGCGATGGCAAACTTCA GTAATGCCAATTGCTACGGTATAGAGTTCCGTGCGTGTGATTTAAAAGGTGCCAACTTTTCCCGAACAAA CTTTGCCCATCAAGTGAGTAATCGTATGTACTTTTGCTCAGCATTTATTTCTGGATGTAATCTTTCCTAT GCCAATATGGAGAGGGTTTGTTTAGAAAAATGTGAGTTGTTTGAAAATCGCTGGATAGGAACGAACCTAG CGGGTGCATCACTGAAAGAGTCAGACTTAAGTCGAGGTGTTTTTTCCGAAGATGTCTGGGGGCAATTTAG CCTACAGGGTGCCAATTTATGCCACGCCGAACTCGACGGTTTAGATCCCCGCAAAGTCGATACATCAGGT ATCAAAATTGCAGCCTGGCAGCAAGAACTGATTCTCGAAGCACTGGGTATTGTTGTTTATCCTGACTAAT TGCTTTGATGTGTGATTTTAAACGCTCAAATTTATAAAACGAATAATATTGTCAACCTTGCAATAATAGA CATAGGGACAACCATGTATAAATTTTTACCCTCAGGCGTCTTCACAATAGAGCCATATAGCAGTGGGTCA CTTAGTGGGCTTAATTTTTCCATTAAAGATAATATTAATATTGCTCAGTATAAAACATCATATGGTAGCC CATCTTGGCAAGTAAACATAAGGCTGCCATTTATAAGGCACTGTTGCAAAAATGTGGAGGTGATAGGGGT ACTACGCCGGAACCCCAGATTTTTCCGTCCGTTCAAATTATCCACGGTTGAACAGCTTGATCCCGTCCGC CCGCAGTTGACCAACAGGGGAAATATGCCTGTACAAAGTTTGCCGGGTTATCCCAAGTTCCTGGCATAGC GTACTGACCTTTGTTTCTGATTGTCCCATTGATGCCATTGCCAGTCGCAGTTTGACTGGCGTCATTTTAT AAGGTCGGCCGCCGTTCCGCCCACGGGCTCTTGCTGATGCCAGACCTGCAGTCGTTCTTTCAGCAATCAG TTCGCGCTCAAACTCCGCCAGTGCGGCAAAGATACCGAAGACAAGCTTGCCAGCGGCCGTTGTTGTGTCG ATAGTCGCCCCGTGACCGGTCAGCACTTTCAGACCGGTCCCCCTCGCGGTCAGGTCGTGCACTGTATTAA TGAGATGACGAAGATCACGACCGAGGCGGTCCAGCTTCCATACGACCAGCGTGTCTCCGGGTCGTAGTGC TTTGAGAGCATGAAAAACCTCGGGGCAGCCATCGAATGATGCCATCTACAGGGGTTAAAATAACCACCAT CATTTCATAACAATACCTGCTGACTATGAAGATCTACGTCATCAAAATAGCAGTTCATGGAGTCAGTCCG ATGGTCTGGCGTCGGCTGAGAATTGCTGCCGACACGTCACTGGCCGCGCTTCACTTCATTTTCCAGATAG TGCAGGGCTGGGGGGACGACCATCTCCATCAATTTCACATTTATGGCAAAGATTACGGTATCTCCTACGA AGGAGGCATCGGTTTTGTCGATAATCCGTTCCGGGTCGTGATTGATGATTTTGCTTTTGATGCTGGCGAT CGCTTTACCTATGAATACAATTTCTTTGAGCACTGGCTTCATGACATTCGTGTTGAGGCCATTTATGAAA ACTCTACGCTGAAAGCGCCGTTTTGTATAAGCGGCCATGGTATGCCCGGAGCCACAGCTGCGGATGAGTT CGATAAAACCCTGGCGTTTCTTGAAGCTATCGTTAATGCGGATGATGAAACAACGGTCGGCGAGATCCGC CCTTTTGCTGACGACCTGGATGCTGTCAGGTTCAACCGCCACAAAATCAACCGGCAACTGAGCAGGCTCG ACCTTGCATCTCCGGTACTGGAGCCTGAAGTTATCTGGCTGGGCCGTCGTCGCTGACTGATGTCTATAAA GGTATACGTTTTCAGCATGCCTCTCAGATCCCCGAAAAAATGTCTATAAACCTCCCTAAATCAGTGTTTA TGGATTATTCTTTAAATCTCTATGATGTTTAAAGACCTTCCGGAGGTTTTGCGTGCAATATGCCTACATC AGGGTAAGCTCGGCCGATCAGAATACGGCCCGTCAGGAAGAGGCATTGTCAAAGGCGGGTTTTCAGCCTG ATAAAATTTGTGTTGAGCATGCCAGCGCGAAGGACACAAACCGCCCGGGGTTACAGGAACTCCTGGGGCA ATTACGCCCTGGTGATACGCTTCTGGTTCATTCCATCGATCGCCTTTGCCGGAATATGTCGGATATGTGC GCTGTCACCACCCGGCTTCGTGACCAGGGCGTTACCCTTATTTTTCTGAAAGAGCAGCTGACGTTCAGCG CCGGCACAAACAATCCGATGCAGGAACTGCAGCTGCACATGATGTCGGCATTCAGCCAGTTTGAACGAGC CTTACTGAAGGAAAGGCAGGCCGACGGCATCGCCGCGAAAAAAGCACGGGGTGAAAAAACAGGGCGCCCC GGCGCCGATATCAAAAAGATCCAGGAAATTGACGCACTCAGAAGCAGAGGGGTCAGGCTCAGGATCGCCT GCGACCATGCGGGCCTTGGCGTTTCCACATATTATAAGCTTCGTCACCAGATGAACAACCAGTAG
Region Details
| Region | 1 |
| Region Length | 8.8Kb |
| Completeness(score) | incomplete(40) |
| Specific Keyword | transposase |
| Region Position | 36042-44926 |
| # tRNA | 0 |
| # Total Proteins | 10 |
| # Phage Hit Proteins | 7 |
| # Hypothetical Proteins | 2 |
| Phage + Hypothetical Protein % | 90% |
| # Bacterial Proteins | 1 |
| Attachment Site | no |
| # Phage Species | 6 |
| Most Common Phage Name(hit genes count) | PHAGE_Staphy_SPbeta_like_NC_029119(3) PHAGE_Microc_MaMV_DC_NC_029002(2) PHAGE_Salmon_SJ46_NC_031129(2) PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007(1) PHAGE_Sodali_phiSG1_NC_007902(1) PHAGE_Escher_D108_NC_013594(1) PHAGE_Entero_P1_NC_005856(1) PHAGE_Geobac_E3_NC_029073(1) PHAGE_Salmon_Fels_2_NC_010463(1) PHAGE_Burkho_KS14_NC_015273(1) PHAGE_Entero_Mu_NC_000929(1) PHAGE_Ralsto_RSM1_NC_008574(1) PHAGE_Entero_SfMu_NC_027382(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 30% |
| GC % | 50.91% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NC_014208.1| Klebsiella oxytoca KOX105 plasmid pKOX105, complete sequence. 54641, gc%: 51.82%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 10 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 36042..39278 | PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; pKOX105p46; phage(gi564292555) | 7.93e-06 | Showinfo_outline |
| 2 | 39278..39643 | delta-FipA; pKOX105p47 | 0.0 | Showinfo_outline |
| 3 | complement(39653..40225) | PROPHAGE_Xantho_33913: Tn5041 transposase; pKOX105p48; phage(gi21231545) | 3.31e-14 | Showinfo_outline |
| 4 | 40204..40920 | PROPHAGE_Brucel_1330: transposase, putative; pKOX105p49; phage(gi23502708) | 2.64e-53 | Showinfo_outline |
| 5 | 41066..41599 | PROPHAGE_Brucel_1330: transposase, putative; pKOX105p50; phage(gi23502708) | 8.01e-29 | Showinfo_outline |
| 6 | 42104..42760 | PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; pKOX105p51; phage(gi971764756) | 5.37e-16 | Showinfo_outline |
| 7 | 42845..43180 | hypothetical protein; pKOX105p52 | 0.0 | Showinfo_outline |
| 8 | complement(43079..43576) | PHAGE_Burkho_KS14_NC_015273: gp6; pKOX105p53; phage(gi327198275) | 5.29e-36 | Showinfo_outline |
| 9 | 43627..44217 | hypothetical protein; pKOX105p54 | 0.0 | Showinfo_outline |
| 10 | 44567..44926 | PHAGE_Ralsto_RSM1_NC_008574: hypothetical protein; pKOX105p55; phage(gi117676354) | 9.76e-08 | Showinfo_outline |
Sequence
>36042..39278
KlebsiellaoxytocaKOX105MLDITTITRQNVTSVVGYYSDAKDDYYSKDSSFTSWQGTGAEALGLSGDVESARFKELLVGEIDTFTHMQRHVGDAKKERLGYDLTFSAPKGVSMQALIHGDKTIIEAHEKAVAAAVREAEKLAQARTTRQGKSVTQNTNNLVVATFRHETSRALDPDLHTHAFVMNMTQREDGQWRALKNDELMRNKMHLGDVYKQELALELTKAGYELRYNSKNNTFDMAHFSDEQIRAFSRRSEQIEKGLAAMGLTRETADAQTKSRVSMATREKKTEHSREEIHQEWASRAKTLGIDFDNREWQGHGKPLEADIARNMAPDFTSPEVKADRAIQFAVKSLSERDASFERQKLIQIANKQVLGHATMADVEKAYLKAVQKGAIIEGEARYQSTLKVGASVMAETLTRKEWIDSLTNSGMRADKARFAVDDGIKNGRLKKTSHRVTTVEGIRLERSILTIESRGRGQMPRQLTAEIAGQLLAGKTLKNEQMRAVTEIVTSKDRFVAAHGYAGTGKSYMTMAAKELLESQGLKVTALAPYGTQKKALEDDGLPARTVAAFLKAKDKKLDEKSVVFIDEAGVIPARQMKQLMEVIEKHNARAVFLGDTSQTKAVEAGKPFEQLIKAGMQTSYMKDIQRQKNEVLLEAVKYAAEGNAARALKNITGVNELKEEAPRLAQLADRYLSLSSEQQDATLIISGTNASRKTLNDYIRGNLGLAGTGETFTLLDRVDSTQAERRDSRYFSKGQIIIPEQDYKNGMKRGESYQVLDTGPGNKLTVESSSGEQIAFSPRTHTKLSVYQAVSAELAPGDKVMVTRNDKTLDVANGDRFTVKTVEGEKLTLEDKKGRTVELDKKQASYLSYAYATTVHKSQGLTCDRVLFNIDTKSLTTSKDVFYVGISRARHEVEIFTDDKKSLASSVSRDSPKTTAAEIDRFFGLEARFKDIGRDTSLETRSAEKGLPEATGESMAFNQKPDEHNMTTGTDYQPVSNAEDAFHLKQNPMDDSVGLRRHEAQQNDAELAHDYAAADDQQWSAQEYADYEHYAEASDYDFDSSIYDDYAMPQTSQAEQSHTGKEHTHEHEHEEGGHEI
Sequence
>39278..39643
KlebsiellaoxytocaKOX105MEQTDKRKQDKLKFDRVINLARRLPQPAIHDLLRALILPIQADYLLAVGTEGQDARPDMNEREFFFTKIIWAMDYTHMKSLRLAAEDFPLALATAKILPWPWGESSYRSALADIGVRGSIV
Sequence
>complement(39653..40225)
KlebsiellaoxytocaKOX105MGSCAAPSAKGDDKFITTDYLQQCPVHASELVGSLLKSSRPSGLAQAIMEVGRVNKTLYLLNYIDDEEYRRRILTQLNRGEGRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNAVVLWNTLYMQEALSHLRSAGEIPEDEHISRLSPLMYGHINMLGHYTFTLPENILKGELRPLNFNSNNELLP
Sequence
>40204..40920
KlebsiellaoxytocaKOX105MELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Sequence
>41066..41599
KlebsiellaoxytocaKOX105MEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Sequence
>42104..42760
KlebsiellaoxytocaKOX105METYNHTYRHHNFSHKDLSDLTFTACTFIRSDFRRANLRDTTFVNCKFIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRTNFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLSRGVFSEDVWGQFSLQGANLCHAELDGLDPRKVDTSGIKIAAWQQELILEALGIVVYPD
Sequence
>42845..43180
KlebsiellaoxytocaKOX105MYKFLPSGVFTIEPYSSGSLSGLNFSIKDNINIAQYKTSYGSPSWQVNIRLPFIRHCCKNVEVIGVLRRNPRFFRPFKLSTVEQLDPVRPQLTNRGNMPVQSLPGYPKFLA
Sequence
>complement(43079..43576)
KlebsiellaoxytocaKOX105MASFDGCPEVFHALKALRPGDTLVVWKLDRLGRDLRHLINTVHDLTARGTGLKVLTGHGATIDTTTAAGKLVFGIFAALAEFERELIAERTTAGLASARARGRNGGRPYKMTPVKLRLAMASMGQSETKVSTLCQELGITRQTLYRHISPVGQLRADGIKLFNRG
Sequence
>43627..44217
KlebsiellaoxytocaKOX105MKIYVIKIAVHGVSPMVWRRLRIAADTSLAALHFIFQIVQGWGDDHLHQFHIYGKDYGISYEGGIGFVDNPFRVVIDDFAFDAGDRFTYEYNFFEHWLHDIRVEAIYENSTLKAPFCISGHGMPGATAADEFDKTLAFLEAIVNADDETTVGEIRPFADDLDAVRFNRHKINRQLSRLDLASPVLEPEVIWLGRRR
Sequence
>44567..44926
KlebsiellaoxytocaKOX105MSDMCAVTTRLRDQGVTLIFLKEQLTFSAGTNNPMQELQLHMMSAFSQFERALLKERQADGIAAKKARGEKTGRPGADIKKIQEIDALRSRGVRLRIACDHAGLGVSTYYKLRHQMNNQ
Klebsiella oxytoca KOX105 plasmid pKOX105, complete sequence
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 54641 bps
Phages: 1
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Locus 1: pKOX105p46 (Region 1)
Locus: pKOX105p46ORF Start: 36042
ORF Stop: 39278
Strand: Forward
Protein Sequence: MLDITTITRQNVTSVVGYYSDAKDDYYSKDSSFTSWQGTGAEALGLSGDVESARFKELLVGEIDTFTHMQRHVGDAKKERLGYDLTFSAPKGVSMQALIHGDKTIIEAHEKAVAAAVREAEKLAQARTTRQGKSVTQNTNNLVVATFRHETSRALDPDLHTHAFVMNMTQREDGQWRALKNDELMRNKMHLGDVYKQELALELTKAGYELRYNSKNNTFDMAHFSDEQIRAFSRRSEQIEKGLAAMGLTRETADAQTKSRVSMATREKKTEHSREEIHQEWASRAKTLGIDFDNREWQGHGKPLEADIARNMAPDFTSPEVKADRAIQFAVKSLSERDASFERQKLIQIANKQVLGHATMADVEKAYLKAVQKGAIIEGEARYQSTLKVGASVMAETLTRKEWIDSLTNSGMRADKARFAVDDGIKNGRLKKTSHRVTTVEGIRLERSILTIESRGRGQMPRQLTAEIAGQLLAGKTLKNEQMRAVTEIVTSKDRFVAAHGYAGTGKSYMTMAAKELLESQGLKVTALAPYGTQKKALEDDGLPARTVAAFLKAKDKKLDEKSVVFIDEAGVIPARQMKQLMEVIEKHNARAVFLGDTSQTKAVEAGKPFEQLIKAGMQTSYMKDIQRQKNEVLLEAVKYAAEGNAARALKNITGVNELKEEAPRLAQLADRYLSLSSEQQDATLIISGTNASRKTLNDYIRGNLGLAGTGETFTLLDRVDSTQAERRDSRYFSKGQIIIPEQDYKNGMKRGESYQVLDTGPGNKLTVESSSGEQIAFSPRTHTKLSVYQAVSAELAPGDKVMVTRNDKTLDVANGDRFTVKTVEGEKLTLEDKKGRTVELDKKQASYLSYAYATTVHKSQGLTCDRVLFNIDTKSLTTSKDVFYVGISRARHEVEIFTDDKKSLASSVSRDSPKTTAAEIDRFFGLEARFKDIGRDTSLETRSAEKGLPEATGESMAFNQKPDEHNMTTGTDYQPVSNAEDAFHLKQNPMDDSVGLRRHEAQQNDAELAHDYAAADDQQWSAQEYADYEHYAEASDYDFDSSIYDDYAMPQTSQAEQSHTGKEHTHEHEHEEGGHEI
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: pKOX105p46, hypothetical protein, phage(gi564292555), PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007
Homolog/Ortholog E-Value: 7.93e-06
Locus 2: pKOX105p47 (Region 1)
Locus: pKOX105p47ORF Start: 39278
ORF Stop: 39643
Strand: Forward
Protein Sequence: MEQTDKRKQDKLKFDRVINLARRLPQPAIHDLLRALILPIQADYLLAVGTEGQDARPDMNEREFFFTKIIWAMDYTHMKSLRLAAEDFPLALATAKILPWPWGESSYRSALADIGVRGSIV
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: pKOX105p47, delta-FipA
Homolog/Ortholog E-Value: N/A
Locus 3: pKOX105p48 (Region 1)
Locus: pKOX105p48ORF Start: 39653
ORF Stop: 40225
Strand: Backward
Protein Sequence: MGSCAAPSAKGDDKFITTDYLQQCPVHASELVGSLLKSSRPSGLAQAIMEVGRVNKTLYLLNYIDDEEYRRRILTQLNRGEGRHAVARAICYGQRGEIRKRYREGQEDQLGALGLVTNAVVLWNTLYMQEALSHLRSAGEIPEDEHISRLSPLMYGHINMLGHYTFTLPENILKGELRPLNFNSNNELLP
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: pKOX105p48, Tn5041 transposase, phage(gi21231545), PROPHAGE_Xantho_33913
Homolog/Ortholog E-Value: 3.31e-14
Locus 4: pKOX105p49 (Region 1)
Locus: pKOX105p49ORF Start: 40204
ORF Stop: 40920
Strand: Forward
Protein Sequence: MELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: pKOX105p49, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 2.64e-53
Locus 5: pKOX105p50 (Region 1)
Locus: pKOX105p50ORF Start: 41066
ORF Stop: 41599
Strand: Forward
Protein Sequence: MEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: pKOX105p50, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 8.01e-29
Locus 6: pKOX105p51 (Region 1)
Locus: pKOX105p51ORF Start: 42104
ORF Stop: 42760
Strand: Forward
Protein Sequence: METYNHTYRHHNFSHKDLSDLTFTACTFIRSDFRRANLRDTTFVNCKFIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRTNFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLSRGVFSEDVWGQFSLQGANLCHAELDGLDPRKVDTSGIKIAAWQQELILEALGIVVYPD
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: pKOX105p51, hypothetical protein, phage(gi971764756), PHAGE_Microc_MaMV_DC_NC_029002
Homolog/Ortholog E-Value: 5.37e-16
Locus 7: pKOX105p52 (Region 1)
Locus: pKOX105p52ORF Start: 42845
ORF Stop: 43180
Strand: Forward
Protein Sequence: MYKFLPSGVFTIEPYSSGSLSGLNFSIKDNINIAQYKTSYGSPSWQVNIRLPFIRHCCKNVEVIGVLRRNPRFFRPFKLSTVEQLDPVRPQLTNRGNMPVQSLPGYPKFLA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: pKOX105p52, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 8: pKOX105p53 (Region 1)
Locus: pKOX105p53ORF Start: 43079
ORF Stop: 43576
Strand: Backward
Protein Sequence: MASFDGCPEVFHALKALRPGDTLVVWKLDRLGRDLRHLINTVHDLTARGTGLKVLTGHGATIDTTTAAGKLVFGIFAALAEFERELIAERTTAGLASARARGRNGGRPYKMTPVKLRLAMASMGQSETKVSTLCQELGITRQTLYRHISPVGQLRADGIKLFNRG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: pKOX105p53, gp6, phage(gi327198275), PHAGE_Burkho_KS14_NC_015273
Homolog/Ortholog E-Value: 5.29e-36
Locus 9: pKOX105p54 (Region 1)
Locus: pKOX105p54ORF Start: 43627
ORF Stop: 44217
Strand: Forward
Protein Sequence: MKIYVIKIAVHGVSPMVWRRLRIAADTSLAALHFIFQIVQGWGDDHLHQFHIYGKDYGISYEGGIGFVDNPFRVVIDDFAFDAGDRFTYEYNFFEHWLHDIRVEAIYENSTLKAPFCISGHGMPGATAADEFDKTLAFLEAIVNADDETTVGEIRPFADDLDAVRFNRHKINRQLSRLDLASPVLEPEVIWLGRRR
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: pKOX105p54, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 10: pKOX105p55 (Region 1)
Locus: pKOX105p55ORF Start: 44567
ORF Stop: 44926
Strand: Forward
Protein Sequence: MSDMCAVTTRLRDQGVTLIFLKEQLTFSAGTNNPMQELQLHMMSAFSQFERALLKERQADGIAAKKARGEKTGRPGADIKKIQEIDALRSRGVRLRIACDHAGLGVSTYYKLRHQMNNQ
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: pKOX105p55, hypothetical protein, phage(gi117676354), PHAGE_Ralsto_RSM1_NC_008574
Homolog/Ortholog E-Value: 9.76e-08
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download