Submission Results
Sequence Name: Not Available
GenBank Accession Number: 312261321 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 312261321.PHASTER.zip
gi|00000000|ref|GU943791.1| Klebsiella pneumoniae plasmid pNMDHA InNMDHA integron, partial 25827, gc%: 52.44%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 10Kb | incomplete | 10 | 14 | 11261-21344 info_outline | PHAGE_Microc_MaMV_DC_NC_029002(2) | 50.17% | Show info_outline |
Region DNA
>1 11261-21344 TTACTTCTGGATTTTATTAACGCGCACCACCGGCGGTTGCATTTTAGCGTCAAGGCTACCGTTAATGCTG ATCATTTGATCGGGTTTTATCGTTCGGCCATCAAAGACCGCAAGCGGGATTAGCGTATTGATACTGCCGG TTTTGTCACGGAAGATAAACTTATCTCCTCCCTGATCCTCAATGAGATTACCTCGTAAAGAGATGGTCGC ACCGTCATGCATGGTTTTAGCTTGTTCGACGGTCATGATTCTTGCATTTTCAGTGCCGCGATAGCCTTCA TCCAGTGCATGGGCAGGTGGCGGGGCGGTATCTTTTTTCAATCCGCCATTATCATCGGCAAACGCTGATG GCAATAAAAAACAGAACAGTAAGGGGGCGAACGATATTTTCATAGAGCCTCCATTGAAATTGATTTGACT TATTAAGTTTGGTAGCTATTTATTAATCTGGCGAGTGGGATAAGTCTCAAATTGTAATTTTTCAATAAAA CAACGGCTTGGTGTTATATAAGCGAGGCGGGGAGATGAACAGAGAGAAAACCCATTTTCAAGGAGTAAAA GAGAGCCTGCGTTTTCTGAATTTTGAATCTGGCTTTCACAAGATTGGTTTTATCTGTTTGCTCTGCATTG TTTTTCTTGCTTCGGTGGGAGCGTTTTCCGGCGGATATTTAAGTGAGGTGACGAGAAAAAACACCTTAAA GACAACAGGGTTACAGTACGAAAGGTTTGGGCGCTTGCAAACGGAATTTAAATTTAAAATCTCTGCACAA AAGTATGATTCTGTGAACAAGACGTTGCGCATTGGCGGCGATTTCAACAAATTTTATGAAATGGAAAATA TTTGGCCGCAGCCAGACAGCATGTACAGCAAGGGGAACGATCTTTACCTCGTCTACAATGATTCTGAAGC AATGCAGAACTTTACTATCTGGCTGCGGGTTACGCCCGTGAAGCCAGGAAGCGTAAAGAGTTTTCTCCAG CTAAATGGCGAACCTGAAATCCGCTTCAGACAATTTATTTATCCCTAGGAGGTGAGTATGGAGATGGTCT TCCGGGCATCCGCCATTTACCTTATTTTGCTGGTGGTTTTCAAAATAGCAGGTCGCCGGGCATTATTACA AATGACCAGCTTCGATCTGATTTTATTACTGATTATCAGTGAAGCAACTCAACAAGCCTTGTTGGGTAAT GATTTTTCGATAACCGGCGCCATGATCACGATTGTCACTCTGGTTACTATTGATATTCTGTTCGGTTTCA TTAAAAAAAAGGTGGGTGGGGCCGAATCCGTGCTGGATGGTTCCCCGGTTATCCTGCTTGATCACGGGAT CCCTTTATTAGATAAAATGAAGAAAGTGGATGTCTCTCTTGAAGATATATTAGTCGCTGCGCGACAAAAT CAGGGGATTACCGAATCAAGTAAAATCAAGTATGCCATTCTGGAACGCAACGGACATATTTCTGTCATTC CTGAAGAGAATTAGCGAGGCGGTAATGAATACGGAGTACAATGACGCAAAAACAGTCAATGAACTGACAA AACGGCTTGCAAACACGCTCATTGATAGCGATTTAACGTTGACCACCGCAGAATCCTGTACAGGAGGAAA GCTGGCCGCGGCGCTTTGCGCACAGGCGGATACCGCAGAATTTTATGATATCGGCGTTATAACCTTTAGC GATCGCGCCAAGCAGAAAATGCTCGACGTGCGGGCCAGTACGCTGAAGAAATATAGCGCCGTTAGTGAGC AAACGGTCAGTGAGATGTCTGTAGGAATACGTCAGCAAGCCGAAACCGATATCAGTATAGCCATCAGCGG ATATGCAGGGCCGGAGGGTGGGGAGGATGGTACTCCCGCAGGAACCGTGTGGTTTGCGTGGAATTTCCGC GGACAGATAATAACAAAACGTGAGTGTTTTTCCGGGGATTGCCAGGACGTCATTGAAAAGGCGGTACGTT TTAGCCTGGCGGTATTGATTGAAGAAGTGTCAGCCTGGAAGAACAAATAAATAAACCAGGACTTATCCTA GGAAATATTTCAATGCTATGTGAAGTTATCGTCGTGAGAGCCAGGTTAATATTAGGAGAAAATTAAGTGG TAGGTAAATTATAAAGACCATGTCATTCATTTTGTTCTACGCTTATTAGTCTTTGCGATGAATGATGACT CACGAGAGGTGATTGAATGACTGACCTAAATAAAGGAAAACAGACCACCAATAAAACTAATTCAGAGCGT TTTCCGCAGCCGCCTTTTCCACATCAAAAACAACCTTTTCCGGGGCTCGCCGGAAAAATGCAACCGCGCC CCGATCATGGCGAACAAAGCTATCAGGGAAGCGGCAGGTTAAATGGTCGCAAGGTATTAATTACCGGTGG TGATTCAGGTATTGGGCGTGCTGTTGCCATTGCCTATGCCCGCGAAGGCGCCGATGTCGCGATTAATTAT TTACCTGAAGAAGAGGACGATGCTCGTGAGGTTGTTGAGTTGATAAAAAAAGCTGGGAGAAAAGTTGCGG CGATTCCCGGCGATATTCGTGACGAAACTTTTTGTAACCATCTGGTAAAACAGGCGGTAGACGCGCTGGG AGGGTTGGATATCCTGGTGAATAACGCAGGCCGTCAGCAATTTTGTGAATCGATCGAAGACCTCACCACA GAAGAATTTGATGCGACATTCAAGACCAATGTCTACGCCATGTTTTGGATCACCAAGGCGGCTATTCCCC ATTTCTCCCGAGACAGCGTGATTATTAACACCTCATCGGTACAGGCTTATGAGCCGAGTGAGATCCTGCT TGATTATGCTCAGACCAAGGCGGCGATAGTGGCATTTACTAAATCGCTGGCGAAGCAACTGGCCCCTAAA GGGATCCGTGTAAATGCTGTCGCGCCTGGGCCGTACTGGACGGTATTGCAGTGCTGCGGCGGCCAACCAC AGGAAAAAATTGAGAAATTTGGTGCAAATGCGCCGCTTGGTCGCCCTGGCCAACCGGTAGAAATTGCTCC GCTGTATGTCACTTTAGCGGCTGAAGAGAACAGCTATACATCCGGTCAGGTATGGTGTTCTGACGGGGGG ACCGGAACCCTCTGACGTTTATGCCCCCGAAGTCGAAACGTCTGAGGGGGAAAGCCAGCCCGGACAATAT TGTATAAGGGCAGGGGGCGGCATATACCGCTCCCTGAACATTAACCCATGACAGCGATACCAAGACGTTC CAGGAGCAACGATGCCTGGTAGCTGTCCAGTTTGACGCCTTGCAAATCAACCCCGCGGATATCTAAATCG CCCAGTTCCGAATTGGTCAAATCACAGTGCGTAACGTTTGCTGCTCGCCAGTCGAAGGATGAAAACTCGC CGCCAGAGAGGTCTGATCCACTGAACGTTGCGCCCAGCACCTGAGTACCCATCCAGCGGTTTTCCCACAG CTCGCACTTTTCCAGTACGACTTTTGAAAAGTTGGCGTAGCTTAAGTTGGTATTGGTGATATAGGCGCTA CAAAACCAGGTGCGGGTGGTGATCATATTCATAAAACTTGCGCCGCGAAAATCTGACCCTTGTGCCCGGC AGTGGCGAATTTCGATTCCCAGCGCATTGATATTCCTGAAATCAGCCATGGAGAGATCACAACTTTTGAA AATGGCATCTTTCAGGTTAGCGCGACTAAAATTACATCCTTTCTGACTTTCTCGATCATAAAACTGGCAG CCAATAAATTCAGTGCCGCTAAGGTCGGCACCCGAAAAATCACAGTTGAAAAATGTGCTATTTTCAACTT TTTCACCGGTGAACCTGTTTCTGTCAATTTTTTCGCCAACTAACGCCAGAGTCATCATGATTAACCTGTT TTTTTATACAGTGATTGCAACATGGTAAACTGTTTTAACTCTCGCGTCCAACGTCTGCCCCTGCACGCTA AATTTGGTGTTTCTTCAGTAATGCGCGGAGTTGATGGTAGGTCAGACCTAATAATTCAGCGGCTTTTTTC TGATTAAATTTCGCCTGCTGTAAGCTGGTTTGCAAAAATTCCTTCTCCTGCTGCTGTTGGAATTCACGCA GATCCAGCGGTAGGGTTACTGATGTATGTCTGGTTTCTTGCGCCAGCGGCGGTGCGGCGTGACGCCTGAA CGGGTCAATCACAATCTCATTCAGTGGGTAATCGCTGGTCCCGTGTCGGTATACCGAACGCTCCACGACG TTTTTCAGTTCACGAATATTGCCCGGCCAACGGTAGTGGAGGAGCGTTTCTTTGGCCTCATCGGTGAACC CAGGAAACAACGGTAACCCGATCTCACGGCACATCTGAATGGCAAAATGTTCAGCCATTAACATGATATC GCTTTGACGTTCGCGTAACGGGGGAAGTTGCACCACGTCAAAGGCCAGACGATCCAGCAGGTCGGCGCGG AACGTGCCTTCACTCACCATGCGTGGCAGGTCGGCGTTGGTTGCGCAAACCAGTCTTACATTGACCTGCA GAGGTTGGCTACCGCCTACGCGTTCCAGCTCTCCGTACTCAATAACGCGCAGCAGTTTTTCCTGTACCAG CATCGGGGCGGTTGCCAGTTCATCAAGAAACAGTGTGCCGCCATCGGCGCGCTCGAACCGACCTGGGTGA CGTTTCTGCGCGCCGGTAAAGGCGCCCGCTTCGTGCCCAAAGAGTTCGGAATCAAGTAAATTTTCGTTGA GCGCGGCGCAGTTAAGTGAAATAAACGGGCCTTGCCAACGGGTTGAGAGGTAGTGCAGGCGGTTGGCGAT AAGCTCTTTCCCTGTTCCTCGTTCCCCAATGACCAGCACAGGTTTATCCAGCGGCGCGAGACGAGAAACC TGCTCCAGCACTTCAATAAAGCTGTTCGCTTCGCCCAGCAGATTATCTTTGTATCCTGCCATGATGAAAT TCACCATTTGTTAGTGTTATTCACCAATTTACCCTATTTATCCCGACAGGTAAAATTAGTTATTTTCAAA TATTTCAATGAATTAAAAAGTTGGCATGCGAAGTGCATTAGAACAGCAGCAGGGCATTGCCCGATATCAG AACAGTAAGTGAGGATTACATTATGGGTATTTTTTCTCGTTTTGCCGACATCGTGAACGCCAACATTAAT GCGTTGCTGGAAAAGGCTGAAGATCCGCAGAAGCTGGTGCGGTTGATGATCCAGGAAATGGAAGACACGC TGGTTGAGGTGCGCTCCAACTCCGCACGCGCGCTGGCAGAAAAGAAACAGTTATCGCGTCGTATTGAACA GGCCAGCGCCCAACAGGCAGAGTGGCAGGAAAAAGCAGAGCTGGCGCTGCGTAAAGAAAAAGAAGATTTG GCGCGTTCTGCGTTAATCGAAAAGCAGAAACTGACTGACCTGATTGCCTCCCTGGAGCATGAGGTGACGC TGGTTGACGATACGCTGGCGCGTATGAAAAAAGAGATCGGTGAACTGGAAAACAAACTCAGTGAAACCCG TGCTCGTCAGCAGGCATTGATGTTGCGCCATCAGGCGGCGAGTTCTTCCCGTGATGTTCGTCGTCAACTG GACAGCGGCAAACTGGATGAAGCGATGGCTCGCTTTGAATCTTTTGAGCGTCGTATCGATCAAATGGAAG CTGAAGCTGAAAGCCATAACTTCGGTAAGCAGAAGTCTTTGGATCAGCAATTTGCTGACCTGAAAGCAGA TGATGAAATCAGCGAGCAGTTGGCGCAATTGAAAGCCAAAATGCAGCAAGACAAGCAATAATAATATCTG GCGGTGCCCGAACGCGCCGCCGCTCATCACCTGTAAGGAGTACTCATGAGCGCGCTATTTCTGGCCATCC CGTTAACCATCTTTGTGCTGTTCGTCTTACCGATTTGGCTCTGGCTGCATTACAGCAATCGTTCCAGTCG CGGCGAGCTGGCGCAAAGTGAACAACAGCGTCTGGTAGAACTTAACCAGGACGCACAGCGGATGCGTGAG CGCATTCAAGCGCTGGAAGACATCCTTGATGCTGAACATCCAAACTGGAGGGACCGCTAATGGGGGGCGT TAATCTGAATAAAAAACTGTGGCGTATACCGCAGCAGGGCATGGTGAAAGGGGTTTGCGCGGGTATTGCG CATTATCTCGATGTTCCTGTGAAACTGGTGCGGATCCTGGTGGTGCTGTCCATCTTTTTTGGTCTGGCCT TTTTCACCTTTGTCGCCTACATCGTACTGACGTTTGTGTTGGATCCGATGCCAGACAACGTGGTTTCCGG AGAACAGCAGCCATCAAGCGGTGAGCTATTGGATGCTGTCGATCGTGAACTGGCTGCAAGTGAAAAGCGT TTGCGTGAGATGGAGCGTTATGTAACGTCTGATACTTTTACATTACGCAGCCGCTTCCGCCAATTGTGAG GTTAGAAATGAATAATCGCTGGCAACGTGCCGGGCAAAGGGTTAAGCCGGGCATTAAAATAGCAGGTAAG CTGGTGCTACTGACTGCGCTGCGCTATGGCCCGGCTGGGGTAGCAGGGTGGGCGGTGAAGTCCGTGGCCC GACGTCCGCTAAAAATGTTGCTGGCGTTAGTATTGGAACCTTTGTTGAGCCGGGCAGCGACAAAATTGTC GAAACGCTATTCAGGTAATCAACCCTGATATCCGAAACAACAAAAGCAAGCAACATTTAGTCAACATTCC CCCAGTTAATTTGCGGCAGAGTAGTCTCTTGTGTCATGGGATCGCTACCAATAGAAATGAAGGTGAAAGC GACAGACTCCATTATGCAGGTATCGGTGTGAATTACGCATTCTAAAATGCACTGGGGCATTGTTATGCCC CAGTTTTTATACCAGTGAGTCGGCTAACGATATTTGTGTACCCACGGTGATATTTTGTAAACCTTTCTCA CCGGCAATCAGGCTAAATAATAAATTACAGCTTTGTTCGCCGAGCTGCTGGGTTGGGACATCAATGCCTC CCGGCACGGGCGTCAGCATAAATGACAACAGTTCATTACAGTGACGGTATACGGCACCGGCTTGCCGTCA CGGGTCATAGACAGACGCGATTCCAGATTTTTGACATCAGCGGGGGCATTGAAGGTCAGGCCGATAATGG CGTGTTTTTTCATCGGATCTTGCGGATCCTGATAGAACTCCGCCCGGCCGCCGCGATAATAAAACTCAGG GGTGGTAAAGGTTTTTTGTTTCTCTGTTAACGCCACCTGCGGAGCCAGCAGTGTTTTGGCATCCATATCG ACGGTGTAGGTTTTCCCCATCGGGAAGGTTTTTTTCGCCGTGAATACCAGCTTACGGTCATTACGCCACT GCCACTCACCTTCCATTGCGGGGGTCAGGGTAATACCGGCGGTGACCGGTTTACCGATCAGCGTTACCGG TGCGGCAGAGCGGGAGAATGTCACCACCACAATCTGCGCTGAATTATCATCACGGTTATAATTAACCGCC GAAGGGCGCTGCACAGACGCGGAAATATCCTGCACCACCAGCGGCGCAACATCCACCGGCTTCGGTTTGT TCTGATACCAGTGCCAGGTGTAATAACTGCCCGCTGCCACCGCAGCAGTCAGTAATAATAAGGCAGATAT GGTTTTCGGATAGCGGTTGCCCCTCCGCTCCAGCCGGGCAAGCTGATTACCGGCAAAGGTCACCCAGCCC GGCACCGCCCAGCGGATCCGTCCGGTGAACGGGCGCAGCAGAAAACCCAGCAGAGTAAAGAGATAAACAA GACTGCGAGCCGCCAGACGCAGCAAAATAAAAGGTAAGCGGAGGATAAAACGCAGAACGTCCATGACAAC ATTTTCCTCTGTGTGTTGAGACTGACATCAGTTTGCCGCAGCACACAGTGAAATCCGGTTCAGCCGGAAG CTGTCAGTGCCCGATACTCTCATCCTCCATAAAACAGCCCATAAAGCAAATTATTGCATAAGGAATAATC TTAAATTACGGCCCCGGCGTATCCGCAGGGGCCTGTTCAGGAAAAAAATTATTCCAGTGCACTCAAAATA GCCTGTGCAGCTTTGACTCTTTCGGTATTCGGGTAGTTTTTATTCGCCAGAATCACAATCGCCACCTGTT TTTCCGGAATAAAGGCGACATAGGCGCCGAAACCAGTTGTTGCGCCCGTTTTATGCACCCAGGAAGCACG GTTATACGGCTGAACCTGGTTGTCTGTTACCGGATGCGGCTGCAATGCGACCTCGTTGGTCACACCGTTA ATGATCATATCTTTCTGCTGCGGCCAGTCATACATTTCCCAGCCCAGCCCCTGGTTAATCGCGGCGGTTT TATAGTAGCGGGTCTGGGCGAGATACATTGCCATTTCCAGATCCGCATTACCGGCCCGTGACGGCTCCAT ATTCATTTCCGCCCAGCGCAGCATATCTTTTGAGGCGGATTTCACGCCGTAAGATTCCGCATCAAGCTGT CCCGGCGACACGCGGACCGGTTTTTTGTTTTTATAACCGTACGCATACTGGCTTTGCGCACTTTCCGGCA CAGTAATAAAGGTGTGAGATAACCCCAGCGGTGCCAGGATCCGTGCAGTCAGCAACTGCTCATACGGCAT CCCCGCCGCGTTTGCGGTCAGAGCACCAAACAGGCCGATACTGCTGTTTGCATACAGACGCATATCGCCC GGTTTCCGGGACGGCTGCCACTGCTGATAGAAATTCAGCAGATCCGCACGGCTTTTTACCGCATCCGGCA CCTGTAACGGCAGTCCGCCTGCGGTATAGGTAGCCAGATCCAGCAATGTGATCCCCTTCCACTGCGGCAG AGCCAGCTCCGGCTGGTATTTTGCCGCCGGATCATTCAGCGCCATCTCTTTTTTCGCCACAGAAACCGCA CCCAGCACACCTGTGAAAGTTTTACTTACAGATCCGAGCTCAAATAGTGTATTTTCAGTGACCGGCTGTT TTGCCTGAATATCGGCAAAACCATAATTGAAATAATAGGGCTTACCCTTTACGGAGACGGCAACCGCCAT CCCGGGAATATCCTGCTGTGCCATCAGCGGTTTAATGGTGCTGTCCACCACCGCCGCGACATTATCAGCG GCAGAAAACCCCGGGGCGGAAAACGCCAGCAGAGCGGAAATCAGTGTTGCAGATAACGATTTTTTCATCA GAATTAACCTTCCGTGTGTGAGTAACGGCGGCAAGTATCGTCAGATTCACCGGACAGAACAAACGGTTAT TTATAACAAGAGCCTAAAGAAAAACTTACAGGTGGATTATGGTCAGACGTTATCTCCCCCTTAACCCGCT GCGCGCCTTTGAGGCCGCCGCCCGTCATCTCAGTTTTACCCGCGCGGCGATTGAGCTGAATGTCACCCAT GCCGCCGTCAGCCAGCAGGTCAGGGCGCTGGAAGAACAACTCGGCTGTGTGCTGTTTACCCGCGTCTCGC GCGGGCTGGTGCTGACCCATGAAGGTGAGGGATTACTGCCGGTGCTCAATGAGGCGTTTGACCGGATTGC GGATACTCTGGAGTGTTTTTCTCACGGGCAGTTCCGTGAGCGGGTGAAAGTCGGTGCGGTGGGAACATTT GCCGCAGGCTGGCTGCTGCCGCGTCTGGCCGGATTCTATGACAGCCATCCGCATATTGATCTGCATATCT CCACCCATAACAATCATGTGGACCCGGCGGCGGAAGGGCATGATTATACGATCCGTTTCGGTAACGGCGC GTGGCATGAGTCAGATGCGGAACTGATTTTCAGTGCACCACACGCTCCGCTGTGCTCACCGGCCATTGCA GAACAGTTACAGCAGCCGGATGATGTTCACCGCTTTACCCTGCTGCGCTCATTCCGCCGGGATGAATGGA GCCGCTGGCTGGATTGTGCGGGCGGCACACCGCCTTCCCCGTCACAGCCGGTAATGGTGTTCGATACCTC ACTGGCCATGGCCGAGGCGGCACAACTGGGTGCCGGGGTAGCGATCGCACCGGTATGTATGTTCAGCCGC CTGTTACAGTCAGGCGCACTGGTACAGCCGTTTGCCGCAGAAATCACCCTCGGCGGCTACTGGCTGACGC GGTTACAGTCCCGTACGGAAACCCCGGCCATGCAGCAATTCGCCCGCTGGCTGCTGAATACGGCGGCGGC GTAA
Region Details
| Region | 1 |
| Region Length | 10Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 11261-21344 |
| # tRNA | 0 |
| # Total Proteins | 14 |
| # Phage Hit Proteins | 4 |
| # Hypothetical Proteins | 3 |
| Phage + Hypothetical Protein % | 50% |
| # Bacterial Proteins | 7 |
| Attachment Site | no |
| # Phage Species | 4 |
| Most Common Phage Name(hit genes count) | PHAGE_Microc_MaMV_DC_NC_029002(2) PHAGE_Mycoba_Llij_NC_008196(1) PHAGE_Mycoba_Wildcat_NC_008206(1) PHAGE_Entero_933W_NC_000924(1) PHAGE_Entero_Min27_NC_010237(1) PHAGE_Burkho_phi1026b_NC_005284(1) PHAGE_Entero_VT2_Sakai_NC_000902(1) PHAGE_Mycoba_PMC_NC_008205(1) PHAGE_Lister_LMSP_25_NC_024360(1) PHAGE_Mycoba_Papyrus_NC_022053(1) PHAGE_Mycoba_Tweety_NC_009820(1) PHAGE_Stx2_II_NC_004914(1) PHAGE_Escher_phage_NC_004913(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 14.28% |
| GC % | 50.17% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|GU943791.1| Klebsiella pneumoniae plasmid pNMDHA InNMDHA integron, partial 25827, gc%: 52.44%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 14 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | complement(11261..11653) | PHAGE_Entero_933W_NC_000924: hypothetical protein; -; phage(gi9632540) | 5.99e-10 | Showinfo_outline |
| 2 | 11785..12288 | hypothetical protein; - | 0.0 | Showinfo_outline |
| 3 | 12298..12744 | hypothetical protein; - | 0.0 | Showinfo_outline |
| 4 | 12692..13270 | competence damage inducible protein A; - | 0.0 | Showinfo_outline |
| 5 | 13447..14355 | short chain dehydrogenase; - | 0.0 | Showinfo_outline |
| 6 | complement(14451..15098) | PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; -; phage(gi971764756) | 3.16e-18 | Showinfo_outline |
| 7 | complement(15178..16152) | phage shock protein; - | 0.0 | Showinfo_outline |
| 8 | 16323..16991 | phage shock protein; - | 0.0 | Showinfo_outline |
| 9 | 17046..17270 | phage shock protein; - | 0.0 | Showinfo_outline |
| 10 | 17270..17629 | phage shock protein; - | 0.0 | Showinfo_outline |
| 11 | 17638..17868 | phage shock protein; - | 0.0 | Showinfo_outline |
| 12 | complement(18203..19024) | hypothetical protein; - | 0.0 | Showinfo_outline |
| 13 | complement(19219..20358) | PHAGE_Mycoba_Papyrus_NC_022053: D-Ala-D-Ala carboxypeptidase; -; phage(gi530545214) | 7.88e-09 | Showinfo_outline |
| 14 | 20469..21344 | PHAGE_Burkho_phi1026b_NC_005284: gp58; -; phage(gi38707948) | 1.56e-17 | Showinfo_outline |
Sequence
>complement(11261..11653)
KlebsiellapneumoniaeMKISFAPLLFCFLLPSAFADDNGGLKKDTAPPPAHALDEGYRGTENARIMTVEQAKTMHDGATISLRGNLIEDQGGDKFIFRDKTGSINTLIPLAVFDGRTIKPDQMISINGSLDAKMQPPVVRVNKIQK
Sequence
>11785..12288
KlebsiellapneumoniaeMNREKTHFQGVKESLRFLNFESGFHKIGFICLLCIVFLASVGAFSGGYLSEVTRKNTLKTTGLQYERFGRLQTEFKFKISAQKYDSVNKTLRIGGDFNKFYEMENIWPQPDSMYSKGNDLYLVYNDSEAMQNFTIWLRVTPVKPGSVKSFLQLNGEPEIRFRQFIYP
Sequence
>12298..12744
KlebsiellapneumoniaeMEMVFRASAIYLILLVVFKIAGRRALLQMTSFDLILLLIISEATQQALLGNDFSITGAMITIVTLVTIDILFGFIKKKVGGAESVLDGSPVILLDHGIPLLDKMKKVDVSLEDILVAARQNQGITESSKIKYAILERNGHISVIPEEN
Sequence
>12692..13270
KlebsiellapneumoniaeMPFWNATDIFLSFLKRISEAVMNTEYNDAKTVNELTKRLANTLIDSDLTLTTAESCTGGKLAAALCAQADTAEFYDIGVITFSDRAKQKMLDVRASTLKKYSAVSEQTVSEMSVGIRQQAETDISIAISGYAGPEGGEDGTPAGTVWFAWNFRGQIITKRECFSGDCQDVIEKAVRFSLAVLIEEVSAWKNK
Sequence
>13447..14355
KlebsiellapneumoniaeMTDLNKGKQTTNKTNSERFPQPPFPHQKQPFPGLAGKMQPRPDHGEQSYQGSGRLNGRKVLITGGDSGIGRAVAIAYAREGADVAINYLPEEEDDAREVVELIKKAGRKVAAIPGDIRDETFCNHLVKQAVDALGGLDILVNNAGRQQFCESIEDLTTEEFDATFKTNVYAMFWITKAAIPHFSRDSVIINTSSVQAYEPSEILLDYAQTKAAIVAFTKSLAKQLAPKGIRVNAVAPGPYWTVLQCCGGQPQEKIEKFGANAPLGRPGQPVEIAPLYVTLAAEENSYTSGQVWCSDGGTGTL
Sequence
>complement(14451..15098)
KlebsiellapneumoniaeMMTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRANLKDAIFKSCDLSMADFRNINALGIEIRHCRAQGSDFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFSSFDWRAANVTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLLERLGIAVMG
Sequence
>complement(15178..16152)
KlebsiellapneumoniaeMAGYKDNLLGEANSFIEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSTRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVSEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREIGLPLFPGFTDEAKETLLHYRWPGNIRELKNVVERSVYRHGTSDYPLNEIVIDPFRRHAAPPLAQETRHTSVTLPLDLREFQQQQEKEFLQTSLQQAKFNQKKAAELLGLTYHQLRALLKKHQI
Sequence
>16323..16991
KlebsiellapneumoniaeMGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSNSARALAEKKQLSRRIEQASAQQAEWQEKAELALRKEKEDLARSALIEKQKLTDLIASLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHNFGKQKSLDQQFADLKADDEISEQLAQLKAKMQQDKQ
Sequence
>17046..17270
KlebsiellapneumoniaeMSALFLAIPLTIFVLFVLPIWLWLHYSNRSSRGELAQSEQQRLVELNQDAQRMRERIQALEDILDAEHPNWRDR
Sequence
>17270..17629
KlebsiellapneumoniaeMGGVNLNKKLWRIPQQGMVKGVCAGIAHYLDVPVKLVRILVVLSIFFGLAFFTFVAYIVLTFVLDPMPDNVVSGEQQPSSGELLDAVDRELAASEKRLREMERYVTSDTFTLRSRFRQL
Sequence
>17638..17868
KlebsiellapneumoniaeMNNRWQRAGQRVKPGIKIAGKLVLLTALRYGPAGVAGWAVKSVARRPLKMLLALVLEPLLSRAATKLSKRYSGNQP
Sequence
>complement(18203..19024)
KlebsiellapneumoniaeMDVLRFILRLPFILLRLAARSLVYLFTLLGFLLRPFTGRIRWAVPGWVTFAGNQLARLERRGNRYPKTISALLLLTAAVAAGSYYTWHWYQNKPKPVDVAPLVVQDISASVQRPSAVNYNRDDNSAQIVVVTFSRSAAPVTLIGKPVTAGITLTPAMEGEWQWRNDRKLVFTAKKTFPMGKTYTVDMDAKTLLAPQVALTEKQKTFTTPEFYYRGGRAEFYQDPQDPMKKHAIIGLTFNAPADVKNLESRLSMTRDGKPVPYTVTVMNCCHLC
Sequence
>complement(19219..20358)
KlebsiellapneumoniaeMKKSLSATLISALLAFSAPGFSAADNVAAVVDSTIKPLMAQQDIPGMAVAVSVKGKPYYFNYGFADIQAKQPVTENTLFELGSVSKTFTGVLGAVSVAKKEMALNDPAAKYQPELALPQWKGITLLDLATYTAGGLPLQVPDAVKSRADLLNFYQQWQPSRKPGDMRLYANSSIGLFGALTANAAGMPYEQLLTARILAPLGLSHTFITVPESAQSQYAYGYKNKKPVRVSPGQLDAESYGVKSASKDMLRWAEMNMEPSRAGNADLEMAMYLAQTRYYKTAAINQGLGWEMYDWPQQKDMIINGVTNEVALQPHPVTDNQVQPYNRASWVHKTGATTGFGAYVAFIPEKQVAIVILANKNYPNTERVKAAQAILSALE
Sequence
>20469..21344
KlebsiellapneumoniaeMVRRYLPLNPLRAFEAAARHLSFTRAAIELNVTHAAVSQQVRALEEQLGCVLFTRVSRGLVLTHEGEGLLPVLNEAFDRIADTLECFSHGQFRERVKVGAVGTFAAGWLLPRLAGFYDSHPHIDLHISTHNNHVDPAAEGHDYTIRFGNGAWHESDAELIFSAPHAPLCSPAIAEQLQQPDDVHRFTLLRSFRRDEWSRWLDCAGGTPPSPSQPVMVFDTSLAMAEAAQLGAGVAIAPVCMFSRLLQSGALVQPFAAEITLGGYWLTRLQSRTETPAMQQFARWLLNTAAA
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Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
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Questionable (score 70-90)
Incomplete (score < 70)
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Length: 25827 bps
Phages: 1
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Locus 1: PHAGE_Entero_933W_NC_000924 hypothetical protein (Region 1)
Locus: PHAGE_Entero_933W_NC_000924 hypothetical proteinORF Start: 11261
ORF Stop: 11653
Strand: Backward
Protein Sequence: MKISFAPLLFCFLLPSAFADDNGGLKKDTAPPPAHALDEGYRGTENARIMTVEQAKTMHDGATISLRGNLIEDQGGDKFIFRDKTGSINTLIPLAVFDGRTIKPDQMISINGSLDAKMQPPVVRVNKIQK
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PHAGE_Entero_933W_NC_000924 hypothetical protein, -, phage(gi9632540), PHAGE_Entero_933W_NC_000924
Homolog/Ortholog E-Value: 5.99e-10
Locus 2: (Region 1)
Locus: ORF Start: 11785
ORF Stop: 12288
Strand: Forward
Protein Sequence: MNREKTHFQGVKESLRFLNFESGFHKIGFICLLCIVFLASVGAFSGGYLSEVTRKNTLKTTGLQYERFGRLQTEFKFKISAQKYDSVNKTLRIGGDFNKFYEMENIWPQPDSMYSKGNDLYLVYNDSEAMQNFTIWLRVTPVKPGSVKSFLQLNGEPEIRFRQFIYP
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: , hypothetical protein, -
Homolog/Ortholog E-Value: N/A
Locus 3: (Region 1)
Locus: ORF Start: 12298
ORF Stop: 12744
Strand: Forward
Protein Sequence: MEMVFRASAIYLILLVVFKIAGRRALLQMTSFDLILLLIISEATQQALLGNDFSITGAMITIVTLVTIDILFGFIKKKVGGAESVLDGSPVILLDHGIPLLDKMKKVDVSLEDILVAARQNQGITESSKIKYAILERNGHISVIPEEN
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: , hypothetical protein, -
Homolog/Ortholog E-Value: N/A
Locus 4: 12692 (Region 1)
Locus: 12692ORF Start: 12692
ORF Stop: 13270
Strand: Forward
Protein Sequence: MPFWNATDIFLSFLKRISEAVMNTEYNDAKTVNELTKRLANTLIDSDLTLTTAESCTGGKLAAALCAQADTAEFYDIGVITFSDRAKQKMLDVRASTLKKYSAVSEQTVSEMSVGIRQQAETDISIAISGYAGPEGGEDGTPAGTVWFAWNFRGQIITKRECFSGDCQDVIEKAVRFSLAVLIEEVSAWKNK
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: 12692, competence damage inducible protein A, -
Homolog/Ortholog E-Value: N/A
Locus 5: 13447 (Region 1)
Locus: 13447ORF Start: 13447
ORF Stop: 14355
Strand: Forward
Protein Sequence: MTDLNKGKQTTNKTNSERFPQPPFPHQKQPFPGLAGKMQPRPDHGEQSYQGSGRLNGRKVLITGGDSGIGRAVAIAYAREGADVAINYLPEEEDDAREVVELIKKAGRKVAAIPGDIRDETFCNHLVKQAVDALGGLDILVNNAGRQQFCESIEDLTTEEFDATFKTNVYAMFWITKAAIPHFSRDSVIINTSSVQAYEPSEILLDYAQTKAAIVAFTKSLAKQLAPKGIRVNAVAPGPYWTVLQCCGGQPQEKIEKFGANAPLGRPGQPVEIAPLYVTLAAEENSYTSGQVWCSDGGTGTL
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: 13447, short chain dehydrogenase, -
Homolog/Ortholog E-Value: N/A
Locus 6: PHAGE_Microc_MaMV_DC_NC_029002 hypothetical protein (Region 1)
Locus: PHAGE_Microc_MaMV_DC_NC_029002 hypothetical proteinORF Start: 14451
ORF Stop: 15098
Strand: Backward
Protein Sequence: MMTLALVGEKIDRNRFTGEKVENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRANLKDAIFKSCDLSMADFRNINALGIEIRHCRAQGSDFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWMGTQVLGATFSGSDLSGGEFSSFDWRAANVTHCDLTNSELGDLDIRGVDLQGVKLDSYQASLLLERLGIAVMG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: PHAGE_Microc_MaMV_DC_NC_029002 hypothetical protein, -, phage(gi971764756), PHAGE_Microc_MaMV_DC_NC_029002
Homolog/Ortholog E-Value: 3.16e-18
Locus 7: phage shock protein (Region 1)
Locus: phage shock proteinORF Start: 15178
ORF Stop: 16152
Strand: Backward
Protein Sequence: MAGYKDNLLGEANSFIEVLEQVSRLAPLDKPVLVIGERGTGKELIANRLHYLSTRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPRMVSEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREIGLPLFPGFTDEAKETLLHYRWPGNIRELKNVVERSVYRHGTSDYPLNEIVIDPFRRHAAPPLAQETRHTSVTLPLDLREFQQQQEKEFLQTSLQQAKFNQKKAAELLGLTYHQLRALLKKHQI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: phage shock protein, phage shock protein, -, phage shock protein
Homolog/Ortholog E-Value: N/A
Locus 8: phage shock protein (Region 1)
Locus: phage shock proteinORF Start: 16323
ORF Stop: 16991
Strand: Forward
Protein Sequence: MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSNSARALAEKKQLSRRIEQASAQQAEWQEKAELALRKEKEDLARSALIEKQKLTDLIASLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHNFGKQKSLDQQFADLKADDEISEQLAQLKAKMQQDKQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: phage shock protein, phage shock protein, -, phage shock protein
Homolog/Ortholog E-Value: N/A
Locus 9: phage shock protein (Region 1)
Locus: phage shock proteinORF Start: 17046
ORF Stop: 17270
Strand: Forward
Protein Sequence: MSALFLAIPLTIFVLFVLPIWLWLHYSNRSSRGELAQSEQQRLVELNQDAQRMRERIQALEDILDAEHPNWRDR
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: phage shock protein, phage shock protein, -, phage shock protein
Homolog/Ortholog E-Value: N/A
Locus 10: phage shock protein (Region 1)
Locus: phage shock proteinORF Start: 17270
ORF Stop: 17629
Strand: Forward
Protein Sequence: MGGVNLNKKLWRIPQQGMVKGVCAGIAHYLDVPVKLVRILVVLSIFFGLAFFTFVAYIVLTFVLDPMPDNVVSGEQQPSSGELLDAVDRELAASEKRLREMERYVTSDTFTLRSRFRQL
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: phage shock protein, phage shock protein, -, phage shock protein
Homolog/Ortholog E-Value: N/A
Locus 11: phage shock protein (Region 1)
Locus: phage shock proteinORF Start: 17638
ORF Stop: 17868
Strand: Forward
Protein Sequence: MNNRWQRAGQRVKPGIKIAGKLVLLTALRYGPAGVAGWAVKSVARRPLKMLLALVLEPLLSRAATKLSKRYSGNQP
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: phage shock protein, phage shock protein, -, phage shock protein
Homolog/Ortholog E-Value: N/A
Locus 12: (Region 1)
Locus: ORF Start: 18203
ORF Stop: 19024
Strand: Backward
Protein Sequence: MDVLRFILRLPFILLRLAARSLVYLFTLLGFLLRPFTGRIRWAVPGWVTFAGNQLARLERRGNRYPKTISALLLLTAAVAAGSYYTWHWYQNKPKPVDVAPLVVQDISASVQRPSAVNYNRDDNSAQIVVVTFSRSAAPVTLIGKPVTAGITLTPAMEGEWQWRNDRKLVFTAKKTFPMGKTYTVDMDAKTLLAPQVALTEKQKTFTTPEFYYRGGRAEFYQDPQDPMKKHAIIGLTFNAPADVKNLESRLSMTRDGKPVPYTVTVMNCCHLC
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: , hypothetical protein, -
Homolog/Ortholog E-Value: N/A
Locus 13: PHAGE_Mycoba_Papyrus_NC_022053 D-Ala-D-Ala carboxypeptidase (Region 1)
Locus: PHAGE_Mycoba_Papyrus_NC_022053 D-Ala-D-Ala carboxypeptidaseORF Start: 19219
ORF Stop: 20358
Strand: Backward
Protein Sequence: MKKSLSATLISALLAFSAPGFSAADNVAAVVDSTIKPLMAQQDIPGMAVAVSVKGKPYYFNYGFADIQAKQPVTENTLFELGSVSKTFTGVLGAVSVAKKEMALNDPAAKYQPELALPQWKGITLLDLATYTAGGLPLQVPDAVKSRADLLNFYQQWQPSRKPGDMRLYANSSIGLFGALTANAAGMPYEQLLTARILAPLGLSHTFITVPESAQSQYAYGYKNKKPVRVSPGQLDAESYGVKSASKDMLRWAEMNMEPSRAGNADLEMAMYLAQTRYYKTAAINQGLGWEMYDWPQQKDMIINGVTNEVALQPHPVTDNQVQPYNRASWVHKTGATTGFGAYVAFIPEKQVAIVILANKNYPNTERVKAAQAILSALE
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Mycoba_Papyrus_NC_022053 D-Ala-D-Ala carboxypeptidase, -, phage(gi530545214), PHAGE_Mycoba_Papyrus_NC_022053
Homolog/Ortholog E-Value: 7.88e-09
Locus 14: PHAGE_Burkho_phi1026b_NC_005284 gp58 (Region 1)
Locus: PHAGE_Burkho_phi1026b_NC_005284 gp58ORF Start: 20469
ORF Stop: 21344
Strand: Forward
Protein Sequence: MVRRYLPLNPLRAFEAAARHLSFTRAAIELNVTHAAVSQQVRALEEQLGCVLFTRVSRGLVLTHEGEGLLPVLNEAFDRIADTLECFSHGQFRERVKVGAVGTFAAGWLLPRLAGFYDSHPHIDLHISTHNNHVDPAAEGHDYTIRFGNGAWHESDAELIFSAPHAPLCSPAIAEQLQQPDDVHRFTLLRSFRRDEWSRWLDCAGGTPPSPSQPVMVFDTSLAMAEAAQLGAGVAIAPVCMFSRLLQSGALVQPFAAEITLGGYWLTRLQSRTETPAMQQFARWLLNTAAA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: PHAGE_Burkho_phi1026b_NC_005284 gp58, -, phage(gi38707948), PHAGE_Burkho_phi1026b_NC_005284
Homolog/Ortholog E-Value: 1.56e-17
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download