gi|00000000|ref|NC_017482.1|  Lactobacillus rhamnosus ATCC 53103 DNA, complete genome. 3005051, gc%: 46.69%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
1099130..1099167                   attL                                                                                 N/A                 TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT
complement(1099238..1100422)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05175; phage(gi100026)     0.0                 LactobacillusrhamnosusGGMASISSYKLKDGKKAWEFYIFAGVDPQTGKEIKIHRRGFPTEKIAQQEATLAESEIIRGHSHYQTERILMADYLNQWITKLKVNVKEGSMIIYRYNLKKYIIPKIGDIRLAKYTLKEHQEFISSLFNDGLSLNTVKLINGTLHNALKKAVAIGYITKNPTVGVEFSAYAKDNSKKLHFWTKDQVGSFIEAAEEDKEPMWLSFFVTLIDCGLRVGEAMALRWSDIDFNKNTLSVNATRIYRAETGSNAGKIALDRPKTLSSKRTEYMTARVNDLLQQQYERHFSHGNVQGFRFSTSHNNDFVFTYSSDAKFGQPLRSRATTGAFNRITNRAGLPHIRIHDLRHTHAVLMREAGLSLDDIKDDLGHKDISTTQIYAEISPAKKKENHQQFEKYLNQ
1100593..1100799                   hypothetical protein; LRHM_RS05180                                                   N/A                 LactobacillusrhamnosusGGMMKAFKIQDAVKLYSSLKKTYEREDSKIQKMQEEIDREMKKASLTTKPSAEHQGPKRHLKIHRDRPNS
complement(1100767..1101768)       hypothetical protein; LRHM_RS05185                                                   N/A                 LactobacillusrhamnosusGGMEDHNLHDEAEAEKKLREYIYVDTDLMNSLLAQFDEGLSTLTTRMNEKTSILTQVATKGGRKSAKISGGVPGIANGSGSAEDSHSMADESSTHNRHQYSENIVYGDYGVEILEGYLKKQFVPVENAEPGDLVLYKDSFSLYDFDSLEAGTNPEIIDPVLRLSTDNVSEEKLDGYKKQLRVIQARTRNASNAKMQIDDMKKKIQKAEQKITEDKSSQENFRSVYAMVNFFSKSMPNSVIVSTEQTVVFAQKSLFRLSPSQLQMLQKNPRTLYIMGIVENKSDNTNWKHQTLTNSQLAPRDIGAIASYLSSIALTNFGISQKEDSLRIRPISMYF
complement(1101879..1102082)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05190; phage(gi100029)     8.85e-35            LactobacillusrhamnosusGGMNGPVTLSEAHFIGLIIVLIGVYLALFGHKHRWVYWLIDPDKPGSSLWLAAVFIIIGVLMMMVRKMQ
complement(1102106..1102531)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05195; phage(gi100030)     5.18e-98            LactobacillusrhamnosusGGMANSTIRQADILLRECTVMQVATLDTDTGFPNIVSLTPLKSHRSLKEILFYTDRDTTTIQNVLEKPVVAVYCFNELHHSSLLLRAKAVVLTAEEAIPSFTESLNSFQKSLQYDRPVIIRCNPLTVKIRYNNDIEFSKLNEI
1102914..1103135                   hypothetical protein; LRHM_RS05200                                                   N/A                 LactobacillusrhamnosusGGMMNEDKLGYSYSYDLKDGIVKVKDFVKYLESLPSDSTIRIQGISDDRPAVIDDNVYFEKSSGQLVIQPDSLSI
complement(1103136..1103891)       hypothetical protein; LRHM_RS05205                                                   N/A                 LactobacillusrhamnosusGGMSDTKIETMCAECRDYKSSAVAEVTDDESLKFICPRGHTFHAVLRTPLYVPIFENALRAYDDEEYYECYLSAVTSLEKFRNTAIKAYFWSTNNHKPMDKIIDKSHAIKYSERSIASFATISLLLFGESAIPMLNKMYDSTEKRNRVIHGTLIPTKGLCEEVIKNVYQVVKFFQISWIDDDGYCPISNYQDAIATDNYEAIISNKKEHELAVLVGKLYTLSAIQVVHKDKELDVEFNRSFKIIMDIHHRVFW
complement(1103998..1104699)       PHAGE_Lactob_iLp84_NC_028783: hypothetical protein; LRHM_RS05210; phage(gi971743092)     2.64e-32            LactobacillusrhamnosusGGMAKKVMGADGKQYKVKKPFYKRVWFWILVIVVVAAIGGGLNNKGKSSSESTEKTAVSKTDKSSSSTSKKDSGKITRADFDSIKLGDLMENGNGGAKLDDLKAQFGNPSSTSSSTTNGVKTDLVTWTNVEGGWGANVIVSFTDGNAFSKNLTGFKLGRKQKITLADFNAFQDGTKYADFTSKWGQPDYYNESLIGGQKNVVAGYTSGVKGDLGSNFNVTFTNDALSGKTQSNMK
complement(1104759..1105181)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05215; phage(gi100035)     1.93e-95            LactobacillusrhamnosusGGMMTDFTSDMLREVLNYGFDRGVGAELTYQLKPYTPSVSNPETRWIAVNMNWHKPKQLPYQAAHEIMHVLHQDPACLYFYSASKNSIEGEANIGGIQILVPLYFAYIDKEDANLNQFMEAFDIPAPMEDTALEAIKEFYIN
complement(1105171..1105509)       PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05220; phage(gi100036)     1.19e-37            LactobacillusrhamnosusGGMMSFGERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLASYFNVSTDFLLGVTDVRSKPEQIDISDSKNDTIMTFEGRPIPPEDLEIIKRLLRGGKHDD
1105644..1105886                   PHAGE_Lactob_iLp84_NC_028783: repressor; LRHM_RS05225; phage(gi971743095)            3.72e-49            LactobacillusrhamnosusGGMNEKLKERRKEFHLTMQDISNMIGISKGYYSLIERGERRVSYELAFKIATALKTKPDLIFLEYQSTLSKHIPAQREEVTR
1105883..1106131                   hypothetical protein; LRHM_RS05230                                                   N/A                 LactobacillusrhamnosusGGMSKKEHDEHQIQNWEEHDKRQLQSWEELTQEITEHLKSGDQKLQNIHLTNLYDRYDGFKSYGTLLVAVLVNTRDTPKDAPKD
complement(1106128..1106355)       hypothetical protein; LRHM_RS05235                                                   N/A                 LactobacillusrhamnosusGGMWDVTFINTQTGLPKTIYGVISIVAEMGDKTEQFSPLTLVHEKARLRGYSFTVFTVNEDPFSLGTNWIPESADGD
1106667..1107215                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05240; phage(gi100041)     1.15e-131           LactobacillusrhamnosusGGMKATISSPLNRFATRTNTPQKVIAYAAKLGRSTINNYFHGTPIRANEATDIANSMNDSELSYEMANLFLGIPKLFSGDGIYHDLRGLLVTDKREEDEEKASFIKHDIEGLANDPNFTRDDAKNLKAYAFEKLDSTVADLTELNAICEMLGISIMDLFSERLPHYQKLHYMRKDEQAWNKDLH
1107194..1107424                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05245; phage(gi100042)     4.16e-47            LactobacillusrhamnosusGGMEQGFTLIDPTKPQRTRKPFKPKVYWTPKDVMAHYQVSAATVSRWKKKGAPFVGPGKTQRVEPEKMERWFARQQGV
1107568..1107795                   hypothetical protein; LRHM_RS05250                                                   N/A                 LactobacillusrhamnosusGGMRDTKEYWQDVHDQVENVIYKGHADRGWLWMFELSQRMLNKCAQKNPMAATTGHEKQSKLIYRSSLSRKGGARHA
1107788..1107990                   PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; LRHM_RS05255; phage(gi78000001)     1.21e-16            LactobacillusrhamnosusGGMLEPDWNTAALNEYQNRQARQEEEPPLDWQGHRWLMARPTLNTTTNSSTNMTSLTSALARLNMTTAG
1108002..1108877                   PHAGE_Strept_EJ_1_NC_005294: hypothetical protein; LRHM_RS05260; phage(gi39653695)     8.41e-76            LactobacillusrhamnosusGGMANEIVASVNNRITEMQKNEGLKLPANYSPSNALNSAWLTLSDNSKGPSLLDKTSPQSQAKALLNMVIQGLSPAKNQVYFIPYGKDLTLMRSYFGSLAILKRLDNVQDVWAEVVREGDKFQIGSDRGRTVVKVFEPRIENQDNAIAAAFAVIVDNNGVENFTIMTKKQIDQSWSHAKTKKVQQEFPEEMAKRTVLNRAAKFFINSSSDNDLLLGAVNDTTADEYDNAEPKDVTPNFDDLIDSKPKEEPKHAANAKETKETKPKETSQPDRAEHRPVTDKEVANLFQNQVNK
1108897..1109661                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05265; phage(gi100046)     1.17e-85            LactobacillusrhamnosusGGMDWQYQSPTWFKKFMACEAEALAELKGEWKPKRDPTALLVGNYLHSYFQSRYAHNKFKQEHPEIISTRGATKGQLKREYQVADNMIRTLRTDPKFKEFYQGKKEVIVKGEIGGVAWKGKLDCLADNHKYFADLKTTMDINKRFYLPEEHRYGSFIEAYNYPLQMAVYQELIRQQYGVQAVPVIIAVSKQDPPDKAAVSMPQDLLDYWLERVKELQPRIEAVKNGEEEPKRCEHCEYCRATKHLTQIISLYDLVE
1109677..1110633                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05270; phage(gi100047)     0.0                 LactobacillusrhamnosusGGMDLFKLIREFYIQQSVNPLSTGQIALWHGLVYQCNQLGWPSEFNMPNRTLETLTGLSRQGIVKSRNALKQSGLIDFQTNGVKATTYSVIDISRKLSTSDSRQPSSQDDDSMSNSRQHGRQPSRQHSLQGSLQPSRQHSSTYTKQDETKLDKTKRQQTTAPVKAAERPAGEPSSSSSSILDICNFWEGNGFGQLSPFTRESLVDWVADMRKAGSPEPEKLVLNALRTAVESNVRNYKYVNGILKNWESKRLLTVAAVDANDSERKTNQPQRRYGKPVRNEKLPDWAKPGYKPEHKKASAEDRAELAEQLQKLRALGEKN
1110646..1111131                   PHAGE_Lactob_PL_1_NC_022757: single-stranded DNA binding protein; LRHM_RS05275; phage(gi557308026)     1.75e-99            LactobacillusrhamnosusGGMLNSVSLTGRLTRDVDLRYTQSGTETGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTHKGALVGIEGRIQTRTYDNAQGQKVFVTEVIVDNFALLESRQASQNNPKSQQTANASAAATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLPF
1111149..1111364                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05280; phage(gi100049)     6.68e-42            LactobacillusrhamnosusGGMWHIIERLMREKGYSIRKFSRVAGYKNPTTIYSIKTGQSKDPSFSTMIRIADALGVSLDELRPDKQGEKKS
1111361..1111552                   PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; LRHM_RS05285; phage(gi100038)     4.34e-05            LactobacillusrhamnosusGGMSGNSYLKSVRKSIGLTQREFARKIKCSQSHWIKVEDGFSNPSIKLLKQIKKEFPDFDLNKLV
1111922..1112371                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05290; phage(gi100050)     4.16e-68            LactobacillusrhamnosusGGMTQVTVRLYEQGDKVWRDFKAELLKRYENSAMLDISKIKAFSKIEKQEFNNRIVVSKKAIVEKRAVAGVDDSDTLKTSVNNGLEKISKKRKEARAKYARGIAEAASQCNTLIDVAKRIGKSTTFVKRVASEFEIKLPRRNNGHEEIVSR
1112418..1112672                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05295; phage(gi100051)     4.25e-51            LactobacillusrhamnosusGGMQAIKTKMMVGDLVMVPDRVFMGVRDLGGVARIIRIERYNARGARQDINKPVAFENNAPKELIATVEMVDGKQRQYYLKDVKPA
1112669..1113070                   PHAGE_Lactob_Lc_Nu_NC_007501: putative Holliday junction resolvase; LRHM_RS05300; phage(gi78000012)     9.22e-66            LactobacillusrhamnosusGGMIRLTIPGNPVPQGRPRFTRMGHAYDPTKSRNYKQHVKSVASELNIEPLSGPIRVSMEIYRQLQKSGSKALIRRKKEGKVRPTVKPDVDNYYKSVSDALTGILWEDDNQIVEIHVGKWYSDQPRVEIEAEEID
1113083..1113547                   PHAGE_Lactob_PLE3_NC_031125: sliding clamp; LRHM_RS05305; phage(gi100053)            9.96e-41            LactobacillusrhamnosusGGMNKKLTFTVTVLAGLMFGAGATTIADNVWQGHQNIVETKNNIDKLTAKIHASKSSLSDLQHQLSDAQAQYAALKQQYGNDMANKDAQIQQKIVEGQQAVAQKQAEVDAKQQTINDLTSQLEAAKQANNDLSQAIKDAQSIKDYSDQAVKSVSAK
1113559..1113744                   PHAGE_Lactob_phiAT3_NC_005893: hypothetical protein; LRHM_RS05310; phage(gi48697296)     4.02e-35            LactobacillusrhamnosusGGMYVVAGLNTETEYYRAKYQSQCIRWINENMAKHTESHNTRGDDIKVNIPEPLIIKKVEDEK
1113741..1114247                   PHAGE_Lactob_A2_NC_004112: hypothetical protein; LRHM_RS05315; phage(gi22296563)     1.39e-75            LactobacillusrhamnosusGGMSEEKLYAVKNDDGEYLTVERTAPWWNSPVGTAVRNIDVALAWAEKYGGHVVTFVEEPKKVVLTKEQAEIVERAHSGKFPAASIAFYGDDDEEPLMNAYVNGYTVAKEKKYNVKVPHTKEVWYYKSGDTDLLTICPADKELRGKFTEAEIEHYGLQYCEKEEVTDDDE
1114237..1114416                   hypothetical protein; LRHM_RS05320                                                   N/A                 LactobacillusrhamnosusGGMTNKADIDAAQKAIDAANNAINKLDLCGLYDCAWQAHDGYQRIIDYNKEQLEVTDDGIR
1114403..1114606                   hypothetical protein; LRHM_RS05325                                                   N/A                 LactobacillusrhamnosusGGMAFVELEDGSWINPAFIEEIYKRNPSDTVWEAGMNHGEATTITDADRILILKHAGFVRARKEKDNEQ
1114596..1115027                   PHAGE_Lactob_Lb338_1_NC_012530: hypothetical protein; LRHM_RS05330; phage(gi226377668)     2.67e-64            LactobacillusrhamnosusGGMSNETKQDVFEKALREWDDYVHSWGLQGEEAHGGCEFDPILIKYMKDYDAALPDETEKQKNCPYCHETDPQSKHAHYGKAISDKTEYFDFVRKTKLYRRVKARIKSPEDQHPKLCVTQMNRFREVSVVLDKAINYCPICGRKL
1115024..1115386                   PHAGE_Lactob_Lb338_1_NC_012530: hypothetical protein; LRHM_RS05335; phage(gi226377665)     1.17e-40            LactobacillusrhamnosusGGMTETKRDVLEKLAECYAEVSDAYTSETGSPYYCGDEPNYLEEYGTSLPDNLPVIPKAVGDVIVKLKHKKFSLSGAMSYAAVVSLSPWMTFEHEDTFALAWVLGVWRVEKTGEIVKLEAEK
1115383..1115622                   hypothetical protein; LRHM_RS05340                                                   N/A                 LactobacillusrhamnosusGGMKLVKGDIIRNPWVSDPKWRDFIFIRRGKKYVHTLRSNRGLIEDAMFDKKDVDERFTKVGHSVGFDTMLREVSGEEAEK
1115672..1115854                   PHAGE_Lactob_CL1_NC_028888: hypothetical protein; LRHM_RS05345; phage(gi971752682)     3.90e-23            LactobacillusrhamnosusGGMKISPYRFMSWLGFILALASSFLPAKYMNFGAYKTFTGLTLIAVLFALWDISDAIREKQK
1116149..1116577                   hypothetical protein; LRHM_RS05350                                                   N/A                 LactobacillusrhamnosusGGMELLSISDEKDREAVENILNKYRAERGFIKAPVNPKITSAWGDGTSASTVQRPLYAQQRLERQESARKFCEWCDSCIASMPKQSHQRLLRVRYCDGPETDTPDGDAMNILDISAATYTRRKKNALLAAAWYFGVTPRKSSEQ
1117605..1118753                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05355; phage(gi100059)     0.0                 LactobacillusrhamnosusGGMQWTDEQISDIRKLASEGFTRRETADKLGISYDALQGKAKRLGIEFQKPLKNEYDSDGTQSSETILKVVRGHKMTPREVLEAHGYDYTKWELVRATSNFWKQTPEATLYQSKIQIRPLVEAEQYESLMNDIITHKEPYQAKAPIFVESDRYLVIPAFDTHFNGHTFDLYAESLKRQLEIIQRGHYAKILLILGGDLAHVDNINSTTAKGTQLETTDLGETVNEMEQYFETLIEAIIKNANECEVMYAPGNHDPSVGYMFARLLKRAYSNQSNITWDISLKHYKGTMLGHNFIGATHGDKGKNNYLAKYLDEFGFMLGTAQNRELFTGHLHSEMSKDLGGFVQRQVSTRKPNDRWTDDLGVVAHKTFELVEYSDHNTTAIYYV
1118766..1119308                   PHAGE_Lactob_Lrm1_NC_011104: endonuclease; LRHM_RS05360; phage(gi195661251)          8.89e-135           LactobacillusrhamnosusGGMSEKEIWKDIEGYEGLYQVSNMGRVRSLAHKDKYGRFTNGRTLADWCNSRGYHMVTLYRDGNAKKWWVHRLVATTFIPNQNGYPAINHRDENPSNNRVENIEWCTVLYNNRYGTHGKRIAEALERPIYAITSSGHRYFFSSATKAAELLGLSRGNVSTCLHGKRKHCHGFSFEWAGDPDD
1119301..1119621                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05365; phage(gi100060)     6.53e-58            LactobacillusrhamnosusGGMTRVWNTDYGNMYDVEFRIIEKLSREEKHMNAIIYTKPRCQKCRRTVLKLSRVMPVQTVTADADDYERFRKLGYRSMPVVTVYKADGTHDEWCDLRVDKIKQYTEG
1119658..1120191                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05370; phage(gi100001)     1.79e-99            LactobacillusrhamnosusGGMRLTAKQKKFVDSYIADSNATKAALEAGYSKRTARFVGAENLTKPNIKAAIDERMKRIESDKIAKAAEVLQYFTTVLRGEAKETIIVGTPDGAESVENEPSIKDRMAAGRELLKRYPGNDELLNAQLTKIITDIEKAKADVRKSKAEADIMEAKAKLLTDTDSQDRTVIVDDVPEDD
1120169..1121524                   PHAGE_Lactob_LL_H_NC_009554: putative terminase large subunit; LRHM_RS05375; phage(gi148750837)     0.0                 LactobacillusrhamnosusGGMTSQKMIKLSKMVQPHFYPFWRSKAPYLILNGGRGSFKSSTVSLKLLMMLKRQAQQGHKANVIIIRENTINLRDSVYSQISWAIDMLKMTDEFVFNVSPMRITHRGTGSTFYFYGGDKPEKLKSNTVRNVIAVWYEEAANFKSAEVFDQTNPTFIRQKSPWVDQVQVFYTYNPPKNPYDWINEWIDSVRGDPDFFIDTSTYLDDDLGFTDEQQLKLIDKYKANDYDYYRWLYLGDVIGLGTNVYNMDLFHRLDEVPSNDPIRRLVFSIDAGHINSATTCVAAAVTAKNNLIVLDTYYYSPANQSVKKAPSDLVPEIKSFIDKVRSKYNHPVLKYTIDSAEGALRNEFVKEFGIRWHGIVKGKEADMIDFVSNLLAQGRVFYLDNDDNKIFISEHQQYQWDEKTAHSDDPHVIKEHDHTVDAFKYMVMDNAGQLKLSQANKARAFKNTSKYF
1121529..1122956                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05380; phage(gi100003)     0.0                 LactobacillusrhamnosusGGMAIILTVQGKGSITDGDVFIFPVDTAITGDDITNFISANDELARRKYLPAKKMYLGKHKILHEDAKDHGPDNRLVGNLAHYIVDTYNGFYIGIPPKITLDNTQDNTALQEWNDTNSVQDKLSEISKQAAIYGRALAFLYQDEDSNTCIAYSSPINSFIVYDDTVAHKAIAFVMYWHDEDNNLTGKVYLKDGIYSLDMVRFEGTAGFNPFSEIPAVEFFMNTERQGIFENVETLIDALDKVLSQKANQNEYFDNAYLVIRGMSLPEDDDGNPKLDLNGNQIIYSPDADSTNGVAEFLTKPDGDAIQEHLIDRLISMIYQISMVANLNDEAFSGNSSGVALQYKLLPMRNLAANQDRKFTQSLRSLYKIAFSVGTILPESKADEWQKLNFAFSRNLPENITDEADAASKLKGLVSDQTMLSTLSFVDDPKAEMKRIADETAKKAKDAAANSPSSPDFQKLLNGGGNDDNNDSTTDSE
1122922..1123914                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05385; phage(gi100004)     0.0                 LactobacillusrhamnosusGGMTTTTQQQIASNSAYWNKRTAAERKWIAENLKNDEAFNARIQEYFDKALSNIQKDIDSEFAKYAAYSNDSMAGARQAVMATDIKAYQAEAKRIVDDARKMYNGEPLKYSDFSKDVNDRLKLYNATMRINRLEMLKSEIGQEMLDAHMKVNVDLISKLSDDYQSEIKRQAGILGETVSKGGYTDLAKLLSKREGDYTFSQRIWINQDILKAELDELLTSATIQGQSPLKIARKLRGQVAETVNNHRYVTERIVRTESARIQTQAQLDSFHKFDYQYCKWVAEPSACDVCKEISEGGRTGEGIYRVDDVPDIPVHPNCRCSIAAYAPSDEAE
1124039..1124695                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05390; phage(gi100005)     6.33e-88            LactobacillusrhamnosusGGMIPKILMPMNLQFFAEDNPQGDPKDPVDPPKPKDGDPVDPPEGKKQGEPADPDPDGKHVYTDEQVNEIVKKRLARAEKEKQAAVDEAAKLAKMNADQKKDYELQKAQKERDELKSQLATYEMGKQARSMFEDAKLSVTEDDLKHVVTPEAESTETNVKWLIAHDQAVAERVRQELLKGSTPLDPSSNRKTKSLKDMTLLERSELQRKDPEMYKKLLTK
1124711..1125724                   PHAGE_Lactob_phig1e_NC_004305: minor capsid protein; LRHM_RS05395; phage(gi23455804)     1.49e-60            LactobacillusrhamnosusGGMPEFSGATAKLNLVEPKVFADYVLEQQTATNRLLSSGILTTDPIIQAQLLKGGTYVTIPTLQSLSGEAQTWNDTSDITVGNVDSYSAIAPQMYQAKAFGYTDFGQLSTGAPVAEQIAGQFASFWNIQDNKLLIAVLKNAFLNADLQAVKAYGMGTPAPLAAGDFIAALSRMGDVASPQLTKIVLNSAAVGAMRDQNLIDTIQPSNGGTPISYYNGIEIVEDDALPVAADGTTDAFIIANGAVSYGLANPENSYEVKRDSLGNGGQTAVINRRTLAMQIAGTSFTDVTKVAGLGYSAINASETSMYDLVGDPRNIGIVDYRFTIDKKFVVAGINAPKA
1125952..1126326                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05400; phage(gi100010)     1.22e-81            LactobacillusrhamnosusGGMADTDPVTLADLKTMMEIKTDTQDDVLTLIIKNTTQALRFKLGLRTDEAFPSELAYIALEVCVRRYNRRKNEGMTSYEQEGQSFTFKSNDFDDFADDISDWKEANGKNAKSLGTVSFISGYPKR
1126331..1126633                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05405; phage(gi100011)     1.64e-65            LactobacillusrhamnosusGGMRLDHEVTFWLDDEEYNPQTHQYGDVKKVATAVASVTDMGTDKSAQLFGNYAQKAKVIRLVEPITVNWSYLTIDDEATHYALNTDRVPLQNATLIVGETK
1126630..1126995                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05410; phage(gi100012)     2.48e-81            LactobacillusrhamnosusGGMSKASISYNMEIKGMDKLVAGLLSRAKMDVVKQIVKQQAAQLQTRAQQMTGTVYAHPTGATKRGIKLSLEDGGLTGIVGMSMEYNPYTENGTRFMRARPVLKPAFLYQKVQFINQLKQAAK
1126996..1127400                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05415; phage(gi100013)     1.04e-94            LactobacillusrhamnosusGGMIQITSPEQELYDYFYAFSQSSGYKTYDHLPMQQENAPYPFVIVGDIQVVPIATKTSLNGNVLITIDIWGDKKQRFTVSDMAERFFRAAIGQVLTDDYRFYGRVEDQSKEFTQDQSVPDTVLNRATLILNLNIL
1127412..1128014                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05420; phage(gi100014)     2.64e-124           LactobacillusrhamnosusGGMANELKVLEGMDVVALARKHSDQATVSGQIIPWQTSLSFDPSVDSDSTVTKDGNVATRSSASTDLEVEFLNNTAAIADVMYDSLFDGELLDFWILYRKRKNADGKYYAWYMQVTVQEDSSDNDPDDHSTRDVTFSVNGTPKRGWTTLDDETQEQVDYVFLGVGKVTDTDNTGGGTVWDKAVDPGTNTADTAPAGGTGTGA
1128101..1128433                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05425; phage(gi100015)     1.76e-56            LactobacillusrhamnosusGGMQLTINGKEYELNFGVRFVREMDKNMGAVMHGINFGMGVAKALAGLSAYDAAVLSDTIYSATVASKKRPSASEVDDFIDSNSDLDSLFKQVSDEMNSANAVKAVAKNMKA
1128538..1128891                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05430; phage(gi100016)     1.30e-75            LactobacillusrhamnosusGGMTLVEYELRMEAYQLKQVDRQNEIAQQAWMNQQVQATTGSKNPKPKFKTFDDFFDKKAAIDNVRSNYEPNYEVSQMSKTELKQKRAQVFAKRMAEFQRLKREGKIIPLSERKEGAHG
1128884..1131973                   PHAGE_Weisse_WCP30_NC_031101: hypothetical protein; LRHM_RS05435; phage(gi100030)     5.57e-95            LactobacillusrhamnosusGGMADSFSVEAILSAVDRNFSGTFKNIANSASKVGDSFEKSTKPAGNFVSTVSKIAGAIGLTKVVGAIGAGVKSMAGELDASSKAWQTFESNMKFLGKTPAEISTIEKSLQSYAQKTIYSSSDMASAYAQFASVGVKGVGRLVKGMGGLAAATDDPKQAMKTLMEQGTQMAAKPMVQWADFRLMLEQTPAGMAAVAKAMGMSTKELVENVQNGKISTQQFFDGIEKAGNSKAFQKMATSYKTVGEAMDGLQETLANKLQPAWQAMSKVAVGAISGIIDKIGGINFDSVLASIGRFFSPFSTLILNIRTQLSNLGKGESMSGLSSILQGIGSVLHTIWDLVGSLANVAFVNLIGIAQKVGDAFNSVFGGGQLSGVFDGIKQAVTDFGYAAMGAITTVSDIIANLPWKAIFEGVKAALTGVVNVLKPIAALVKAAFANDIVKSFAVAILGAVGAFKVISLAVGGLSSVIGIFSRMIGPIRGVIAVVTNFGTIAKTAGGIWKAFGLILGMNPWVLLIAGIAAVVAGLVYFFTQTKTGQKLWSGFVSWLQGAWQGLVGVAQTVWNAISGAFTSAISGIQTAWSGITGFFSNLWTGITTTASATWTAFTTTLSVIWQGAVTAATAVWNALSTFFTTLWNGIVAVATAVWSTFGGSLTTIWNGIVQVATGVWNMLKAVIMGPILIVIDLLTGNWTQLSADLQLIWNSIVSAAGQIWNGLVTYFSGIWSLIQTYAMTVWNTLVSALEGLWNGAVSAASAIWSALSSFFSGLWNGIVSTTEGVWNGIASFLSGLWSGTVSTAEGIWNALPGFFSGLWNSITSFFSSAWSNIQSIVIGAATSIFNGAKAVWSGFTGVVSGIVNGIKGAFNALRNFSLADAGRAIMDSFFKGLKAVWGKITDFVGGIASWIRKHKGPISYDAKLLIPAGSAIMNGLNAGLTDKFSNVQRNVSSMAQAIADSAAVTMPAVNTSPFDASLQSLNNSVQGATLSSNLDVNYTRKQTIEVPLYIDGREVARATANPMQTELSRMTRMSNRRKGIV
1132042..1133964                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05440; phage(gi100018)     0.0                 LactobacillusrhamnosusGGMLIDGQYIEDLIPGYSTLQVSGRELLSQSIEKQTIGKSDGEFIQYVRNPSREIIVGYRLSAADNLSFRQAFYKLNDILHGDTHQVSFNDDLSVYWNAVLTDVDDVPKGRNAITSSFTLFVPDGIAHSVATQTFDNMPYKDIPLNLMAGTSADPVSVTGSGWNIQKLGSFNNPTVGKKYAATVLLGRADFAVSFQLWANDINGNRISLAGFPVTTQMGANQRSTIVCTWPDPGTTGAAQIEVTLAWAFQKTDVGTYQYLKAKLEEGTTYSTWSPNPADPEYYSDTITVHNGGTYPVEPVITATMHADNGVVAFVNDQGSVLQFGSPSEIDGVVRQKSERVYYFDFENEPNGIVMNDGALTYPNYRDNPATPNKQKGIFSYGRPDGYDNAIAYPNTERNPSNYWSGPSMSGKLAANSNGKQNGNFEWRNLIRFATMTNWAGRVEFNLTYEGKIVASLALYDQSTTDDQVMFEGKIHDGNDARMLFHEALPRDLYSRANSFAVISKMGDQLTFRIDRVGGGNVIRPFTIAGFGALPVDGWTVWFSAFSDVLEANMGWQDSYFDWVNVDYWTDVPNRFKEGDVVKIDVAKRVVSLNGAEDPTLQTVGNNWEGFQLLPGKNTIQVLQSDWAKPYTCQVEWQEAWL
1133964..1136471                   PHAGE_Lactob_Lrm1_NC_011104: host specificity protein; LRHM_RS05445; phage(gi195661215)     0.0                 LactobacillusrhamnosusGGMDFYFTDRSWHLLGIATAGEGPIHIVNDTDDQLISAGARTYSGTILFTPETSAKVKSMAAYGNYVLYKDTRGKAVFMTIMESNHDPLLGETTFTAEDAGIDLINETVGPYKADKPMSIAEYINFFVTDSGFDIGLNEIPDLKRTLEWTGESDTALARILSVATQFDHAELEFSFQLNGTSVVQRLINIHKRIGADKRITLYVDKDINKIVTSGNIWDLYTAITPTGGTPEAKDGDTSEQKPITLAGYQWTDPDGRFVLTSDGILLDPVANQQWSRLLSGGARPDAAGAYINRVNTYEATTQASLLQSALSDLKKHNHPVVNYETDIARLPDNVDIGDTVHLADENERLYLSARLLELKSSYSMDTHTATLGDYLIETDQVAAQYRELAEKIKNIPKTVQYWPWVRYADDDKGTNMSAFPANKKYMAVVYSNKSSVPSDNPDDYAGKWALIKGADGADGVPGAKGADGRTSYFHTAWADDVSGKSGFTVSGGDGKKYIGTYSDFTQADSTNPADYNWALFKGDKGDQGPQGPQGPQGPQGVPGSKDVPYPYVQLSAPASPKKGDTWWHGTSYNDATALQYYDGSKWVDQSIQQAVLNIKKLQSIEIDSAEINSPTINVPFTHAPIEGGHILSTGKLALNGTSYTIDGTIEDTKGNPNGQRYHTELNPDGLLSYITQTDGTTKMDVSRISMGTLEFTHLASGLGNSATYISSTLDTVKVLQLANNNQMVWQGAMMPENGDVATMSVPLSQTLTGWLIAWSYFQNGVPTHNNYAFTLIPKAALVYNTTGANYLRVTLTMNEVGTTYKLLFYDDRNIVGNDENATGYPAKAVMTEVYAV
1136481..1136804                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05450; phage(gi100020)     5.96e-66            LactobacillusrhamnosusGGMEVDKVKAIFSTDEDGYITGYQQEFWDGTQWQTPFDDEKAIMIAPEELKKIAIGASKLADDGTVVIDTDKQAALDKAANQVTPTAEQKLLANLTLEVAQLKAAKSSD
1136797..1136928                   PHAGE_Lactob_iLp1308_NC_028911: hypothetical protein; LRHM_RS14705; phage(gi971754935)     1.80e-24            LactobacillusrhamnosusGGMTNYDQCALLYSWGIDLTPYVPVMITPDQYKQITGSNYVASKS
1136958..1137251                   PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; LRHM_RS05455; phage(gi195661217)     2.44e-60            LactobacillusrhamnosusGGMTFFGYTIGDWAEVISIIGVGVSAGSWLFKKIALDPLRSDIQVLSETINRQLKLHEQSLADLGQHLRTHDDELGSHSVRITRLEDHVGIKGEDNHED
1137241..1137654                   PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LRHM_RS05460; phage(gi100022)     5.27e-77            LactobacillusrhamnosusGGMKINWTVRVLSVKFWLAVVPASLLVVQTVAAVFGYNWDFASLGKELTAVVNAVFALLTIVGVAVDPTTEGVSDSQQALAYPALITTKAAKIKALEDQIKALQADKEADQVTAASEVVPETSSAAPAESAPASFAPQQ
1137665..1138963                   PHAGE_Lactob_Lrm1_NC_011104: lysin; LRHM_RS05465; phage(gi195661219)                 0.0                 LactobacillusrhamnosusGGMKLKTKLITLVVAFLAAISFALPSQANASKGDQGVDWSRYQGDNGVFGYSTDKFGISQIGGYSGYGTYEQTTYKTQVASLIAAGKRAHTYIWWQNIDNTNLAKQVLDHFLPEIQTPKGSIVALDYEAGSTNTATLLWALDYIRDAGYTPMLYGYKSFLVNHINLSQIASRYQLWLAEYPDYNVTTVPNYNYFPSFDNVGIFQFTSTYRAGGLDGNVDLTGITDSGYNGSTTTGSGKTYVKPATSTPATKAGQQANNTTLSQIKAGDNVKVNFGTTRWANGVAMPSWVQGKTYTVQQVSGSNVLLGGIMSWINRSNVELLTTTSVPSVSYGSTYTVQSGDSWWSIAYKYGMSMYTLASNNGKSIYSVIHPGDVLRVSGGYSVAVSSHTYYTVRYGDSFWSIASKYGISMYTLAANNGKSIYSLIYPGESLYIR
1139254..1139291                   attR                                                                                 N/A                 TTTGAAATAAGGTAAATAAAGAGCTCCAGAATCATGTT
complement(1139583..1139870)       antibiotic biosynthesis monooxygenase; LRHM_RS05470                                  N/A                 LactobacillusrhamnosusGGMKIINVTLHVKPELASDYQQFISQLVAGSRAEAGNLSYDHFQSLTDPDKYEIIEHWQDAEAVAAHNETSHFKQFLAGIDSFLDAPLEIIRMDYSA
complement(1140166..1141017)       PHAGE_Strept_315.3_NC_004586: putative mitogenic factor; LRHM_RS05475; phage(gi28876265)     2.19e-13            LactobacillusrhamnosusGGMKTKLMKYLTPVLIVSLLLTGCSTQGTSKSTSPSTDPVADQTKLNNKTNSAISSLDEAIADKREEVSSLKATLDNSKPSTEASKTTAGTTDANTLANLDYTGQQEITVNNNDPAFSKNDLSTAKGAWAAYSDLDSLNRVTDANALLNRSLMPSAKREPLTWNPTGWHNKKTAHGWLYNRSHLIGYQLTGENNNPKNLMTGTQTLNSPLMLAHEMDIAYYLKQSNDHYVRYEVKPIFRGNELVARGVQMRAQSIGDNTIHFNVYIFNVEPGYTINYADGTSTKN

#### region 2 ####
1392900..1394096                   PHAGE_Acidia_virus_NC_029316: poly-A polymerase; LRHM_RS06655; phage(gi1002166894)     1.30e-19            LactobacillusrhamnosusGGMQLDLNQPDFKAAIPILKKIEAAGYEAYFVGGSVRDALLGLPIHDVDIASSAYPEEIKRIFKRTVDTGIEHGTVMVLDHGTGYEVTTFRTESAYQDFRRPDHVTFVRSLAEDLKRRDFTINALAVRHDGTIIDLFDGLTDLKNRQLRAVGDPHERFHEDALRMMRAVRFESQLGFHIEATTKAAIAANAPLLKHISVERIAAEFNRLLVGIDRRAGMQDFLDTHLFAYAPKLAPHQAALQQFSELPNQAFTSIASGWTALIFMLKVAPESFLPAWKQSNDLMGLVDQAVTLLRKMPTPTAWDLYSAGSAAVAVVSEVAALMDHQFVPASLTTAYEALPIHSKKTLALTGRDLIQAGVRPGPAMGKILHQIEYRVVDGSLPNDSKKLLAAAIEMSREPS
1394221..1394676                   PHAGE_Clostr_phiCD211_NC_029048: hypothetical protein; LRHM_RS06660; phage(gi981220948)     7.51e-05            LactobacillusrhamnosusGGMAEHVFEQLVFHFRNGDEWTVQHDELADVWISRVTTSYGRIHGGQIQEIHPCKSFKVEILPEADHVKSSDINTGSLEMGMFGRATKYQDIEKMDLVFDDQTKKQVQIYFPFKQKDPSGLDNEYQTSKLAKNGHLYIVIDAQHTVDDEYPRI
1394825..1396738                   PHAGE_Bacill_G_NC_023719: gp245; LRHM_RS06665; phage(gi593777701)                    2.45e-12            LactobacillusrhamnosusGGMQTLTAQGLSKAYGDKQLFNQIDFLINEGERIGLIGVNGTGKTTLIRSLAGMESVDAGTIKTPKQYRISYLAQIPELDPDLPIMDAIYHGDSPVFQAIRQYERALAAYTKDPLNQAKTDAYTKADAKMTQEDAWSAETDIKTILTQLHIGDLTARVGSLSGGQQKRVGLAQVLIESPDLLLLDEPTNHLDFDSIAWLENYLSHYRGALVVVTHDRYFLDRVTNRIFELDRGRLFQYQGNYQAYVAKKAEQLEAEKSAGHKQAQLYRQELAWMHAGAQARSTKQQARINRFKALQKAKDEAPAPDQQLDPIQIASTRLGKKVIEMHDASLRFDQQVILNHFDWLVQPNTRIGITGQNGAGKSTLLNIIAGKQALDSGTIELGETVRLGYYTQLNTNLDPKKRIITYLQEVGEEVVQADGQRVSVTQMLEQFLFPRSMHGTLIGRLSGGEKRRLYLLQVLMRQPNVLLLDEPTNDLDIATLTVLEDYLDHFSGTVITVSHDRYFLDKVADQLLIFDGNGRIERAVGEFSDYLAKQKPQSAASKTDSASAKPKAPAKKAAPKQKSKLTYAEQIEYDKLQQELDELDEQLAKVKAEMAQVNGEDYVKLGDLQAQLDAINQDIDQKFDRFAELDQYVSSSER
1396175..1396187                   attL                                                                                 N/A                 CGCCTATATTTAC
1396755..1397705                   PHAGE_Staphy_SPbeta_like_NC_029119: thymidylate synthase; LRHM_RS06670; phage(gi985761245)     4.86e-157           LactobacillusrhamnosusGGMLEQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFLHGDTNIRFLLQHKNHIWDEWAFEKWVKSDEYRGPDMTDFGHRSQKDPEFAAVYHEEMAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV
1397822..1398313                   PHAGE_Bacill_BCD7_NC_019515: dihydrofolate reductase; LRHM_RS06675; phage(gi422936066)     8.76e-27            LactobacillusrhamnosusGGMTAFLWAQDRDGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTNVVLTHQEDYQAPGAVVVHDVAAVFAYAKQHPDQELVIAGGAQVFTAFRDDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRTVEDTNPALTHTYEVWQKKA
complement(1398449..1399090)       hemolysin III family protein; LRHM_RS06680                                           N/A                 LactobacillusrhamnosusGGMRVSKSSHYEFNNEMFSAITHAFALGLAVTGTIALGIKGVNSGSQVELFSLIGFGVSLMLLYTASTAFHGFYFSKARHVLQVLDHSGVFILIAGSYLPYCLVAIGGKLGIGLLIAIWALCLGGIAYKLFFLNRFKHLETMIYVVLGWLCLVGMVPLWHHLGPVGFWLLVAGGVAYTGGAMLYLQKGIPYIHVIWHLFVILGSLCMYLSIYFYL
1399331..1400173                   PHAGE_Staphy_SPbeta_like_NC_029119: DegV domain-containing protein; LRHM_RS06685; phage(gi985761237)     6.33e-25            LactobacillusrhamnosusGGMANIKIVTDSSVQLTPEEISQHNITVVPLTIMIDNTVYIDGETITREDFMDEMAAAQNLPKTSQPAIGTFTDVFDKLTADGSQVLSIHMTETISGTVNSARQAAQLVKGDVTVIDSQFTDRSMAFQVLAAAEMAEAGKDMPTILDKLKQIRDHTILVLGVTNLDNLVKGGRLSRVSGLISSFLNIKVVLQMEHGELKALRKGRGMKTINNFVTETISKMAKLTDIQSIGVSTAGAKEIGEDIGRRLAEVLPNVPILVRPTDPVIATHTGPGAFAITYYTD
1400436..1401281                   lipase/acylhydrolase; LRHM_RS06690                                                   N/A                 LactobacillusrhamnosusGGMRTLKNFFISCGVLLLACLLAFGGWQLFGPVSSPSEVKVVANTPKHLQLTALGDSLTYGVGDATNNGGFVGLTKGELEATGQYQVTTKNYGVSGNTSGQILTRVNKQPKIRADLKRANIITVTAGGNDLMHVLQKHFLTLSEKQVTAGSVAFQKRLATLLTTIRKENPTAPIYVFGIYNPFYVYFPKMTAMTNSVKAWNQATQKTLQQFDRTYYVDIDSVLSNGETAANKASAKEALKEATSGDGNPLIFSQDHFHPNNAGYGQMTKQLMKQMKATKKAWE
1401286..1401927                   DUF2140 family protein; LRHM_RS06695                                                 N/A                 LactobacillusrhamnosusGGMQAKKRSLQRNAAKQKAVRTGINWWKWLFLILVGLLLGTGIWFTKTALMPVKINSTPQTTMTSKDPVFTVKVTKNSANRIMAHYLKSYLKDSKIKYAVTLGTNEAALSGSFKFLGNAVKFQLTFDPLVLKNGDVLLKAKNLNIGALPVPISFVMSYIGNSYKIPKWVSLDSKAGTVVLKLTQFKLQNGMTLKANKLDLTNDDLEFAVYLPDEE
1401953..1402471                   PHAGE_Temper_phiNIH1.1_NC_003157: putative methionine sulfoxide reductase; LRHM_RS06700; phage(gi16271776)     4.52e-20            LactobacillusrhamnosusGGMKKETAIFAGGCFWCMVEPFEEQPGILNVVSGYTGGHVANPTYEQVSSHTTGHTEAVEITFDADVIDYPSLLNIYWQQTDPTDAMGQFQDRGDNYRPVIFVKDEAQRQAAEASKAALEASGRFSDPIVTKIEAAKPFYPAEPEHQQFYAKNPRRYAMEHAQRQAFIDKNWKD
1402474..1402716                   YozE family protein; LRHM_RS06705                                                    N/A                 LactobacillusrhamnosusGGMHRTFYEYLMTLRNPNDHSEVAEFAKNAFLDQSFPKHEKDYHRLSDYLELNGNYLPTMAIFDETYRDYEASESTGGDSYQ
1402685..1404127                   PROPHAGE_Escher_MG1655: carboxy-terminal protease for penicillin-binding protein 3; LRHM_RS06710; phage(gi16129784)     1.06e-29            LactobacillusrhamnosusGGMKAQEAIHINKHKVPLWAVIVLFLVALGGGAAGGYALSYQQAQQSVLKTGVPKALAPVISAYETVTNNYYKQVSTTKLTDGAIKGMLSSLDDPYSVYLQNNDKTNLDDTISASFGGIGATIQQDHNSLSIASILPGTPAKKAGMKVGDVLLKVNGKDVSKKTVTQAVAKIRGKIGTTVAVTVKRGSKQATFSMKRKKITVDTVIGKLAPANKQVGVITISTFSEPTVKQFKATVKKLRKEGAKSFILDLRQNPGGMMTAALSISSMFSKNGQTVMQIEDRNGAKEVYKAGKKLDGGFKVTEKTAVLIDGNSASASEITAAALHQNSQIPLVGEKSFGKGTVQNVGEMSSNKELKLTVAKWLTPDGTWINHKGLTPDVKVAYPAAAKITLINATQLKPGDKGSDVKSLQQMLKALKIGSATVNGQYDDATQAAVKSFQEANELDASGTADQDTLAALAQKLSAQLTKDDPMVAAAVKEVTK
1404228..1404557                   hypothetical protein; LRHM_RS06715                                                   N/A                 LactobacillusrhamnosusGGMIELEGFAVYPNKVERAKEWMSFLKGHQEAVNETLGPENIEVERIFSVSVNGRMYLCWYSEQTAPIPDVTRSTNPIDQVHVDFWKECIDEKAPRLEFKLENEFKRPGVN
1404620..1405168                   hypothetical protein; LRHM_RS06720                                                   N/A                 LactobacillusrhamnosusGGMENKGVNLTTYWKYLNTIVVLIVFFLISLIFASHTMIQTLLGVGSLAWFLFFLIREIYLNNRRTQRTRFQVRLSHGLIVLGLLLFNTSVHQTVISTFGQTDMIQFWGEHEAAIHMNGRAYHLIWTKRSFHSTTYFYNLYERRGLFFYRVNSEVMSWTINPPEQRDYGAVRTFLYHGEEQGVK
1405254..1405964                   DUF4918 family protein; LRHM_RS06725                                                 N/A                 LactobacillusrhamnosusGGMNEQANFATKVLTLHQRLASVKMTLPGCYQLVNPYSGKQKHAVDQITAAFYHKYFNDNHKRRLILGSSPARKGTAITGVPFEDAAELQAETGIAVAKFQIKPSSTNFLYDVMQQYGGKRKFYSDFYMSFACPLGLSKISAKGNVINSNYYETNVIKDRLMPFIVASLQEQIKLGVDTSVCYCIGSGENFKVLTSINQTYHFFGSIVPLEHPRYVMQYHFKDRARYIQKYVAALNCK
1405982..1406839                   ribosome biogenesis GTPase YlqF; LRHM_RS06730                                        N/A                 LactobacillusrhamnosusGGMAIQWFPGHMAKARKQVQEKIKQVDLILEVVDARTPESSRNPMLDELVGDKPRLIILNKQDLADPVLTNEWVRYYQTQGFAAIAIDAQHAKRLQQIPQAAAKLMAEKIARKKARGIRNPMIKAMCIGIPNVGKSTVLNRLVRKNIAVTGNKPGVTKNQQWLKASDNFQLLDTPGILWPKFASQTIGMRLAFTGAIADAVFQEDVVGLYGLNYFMAHYPAALKKAYHLTDTDLQAAPHDVLVKLTKTQGFGEEFNRMAERLIFDARQGKLGRFTLEKPGELDADAE
1406823..1407581                   ribonuclease HII; LRHM_RS06735                                                       N/A                 LactobacillusrhamnosusGGMPTLSEYKTLLQADHVDPAVLTALEQDSRIGARKLLAAYQRRQDHQAAEAVALRYRSRYERKLWKMYSHVAGLDEVGRGPLAGPVVTAAVILPHQFKWPVNDSKQLTAHERDVLYPHILTEAIAVGIGVADNHEIDRENIYHATELAMAQAVSHLRVAPEFLLVDAMHVPVNLPQERLIKGDANSISIAAASIVAKVIRDRLMVMYDRVYPGYDFKDNMGYGTKAHLAGLATHGVTPIHRRSFGPVRHCLKS
1407629..1408444                   PHAGE_Thermu_OH2_NC_021784: SMF family protein; LRHM_RS06740; phage(gi526118339)     3.30e-29            LactobacillusrhamnosusGGMTLRDFLLAWHLATHQNPRLAVSLQQAILKKADLSTYQNDLKQKLTPAVARILSAARETPYLTFVDTAYPPRLREIPQPPSVLFYQGNLGLINQLTLGVVGSRKATNYSAEALTRLFPQLPPMTIVSGLAAGADSMAHEAALAAGLPTIAVIANGIDQVYPAKNRSLQRQISRVGLVVSEYPPGTAPQRFQFVARNRIIAGLAHGVMVTEAEIKSGSLITANYALQHNREVFALPNRFGDVLGAGTNALIQAGAAIVTGPETLMENLHFYP
1408690..1410774                   type I DNA topoisomerase; LRHM_RS06745                                               N/A                 LactobacillusrhamnosusGGMADKKLVIVESPAKAKTIEKYLGRTYKVVASLGHIRDLPKSQMGVDVENNYKPKYISIRGKGDVIKSLKKDAKKASRVYLAADPDREGEAIAWHVSHILGLDPNAKNRVVFNEITKDAVKNAFKTPRGIDMDLVDAQQARRILDRLVGYSISPLLWKKVKKGLSAGRVQSVALKLIIDRENEIKNFIPEEYWSLDAEFQKGRSKKFSASFYGIKNKKMALKNNEAVQKVLSQIDKTKPFSVTNVVKKERKRFPAPPFTTSTLQQEANRKLGFRTRKTMMLAQQLYEGINLGGKLGTVGLITYMRTDSTRVSNVAKTETSHYLHEKYGEAYAAVKIRQGKLQEGAQDAHEAIRPTSTLRTPESLASVLDKDQMKLYRLIWSRFVASEMTPAIIDTVAVTLNQNDVTFRANGSQMKFEGFTKLYVSSRDSDEKDNVLPPLAVGDAVKMLKTDPAQHFTQPPARYSEANLVKALEENGVGRPSTYAPTIETIQKRYYVKLNARRFEPTELGEIVNSLIVEFFPDIVNIKFTANIESELDSIETGEANWVKVIDQFYKPFEKEVAHAETGIEKIQIKDEPAGFNCDICGAPMVIKMGRYGKFYACSRFPDCRNTKAIVKEIGVICPKCHKGQVVERKSKRNRVFYGCSRYPDCDFVSWDKPVGRDCPVCGHFLVEKKSKAGTQVVCPNNDYKEALQKA
1410944..1412263                   methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO; LRHM_RS06750     N/A                 LactobacillusrhamnosusGGMPTVNVIGAGLAGSEAAWQIAQAGVDVNLYEMRPVKMTPAHHTGNFAELVCTNSLRANQITNAVGLLKEEMRRLHSIIMQSADATAVPAGGALAVDREPFSELVTRQLTNHPHIHVIHDVLTDFPAGITVVATGPLTAPGLADAIVALNGEAGLSFFDAAAPIIDASTIDNDIVYKKSRYDRGEAAYLNCPMNKEEFQAFYKALVTAEVAEGHDFEKMTVFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDPKTGKTPYAVVQLRQDNAAASLYNIVGFQTHLKWGEQKRVFRMIPGLEHAQIVRYGVMHRNTFMKSPVVLEPTYASKRRGDLFFAGQMTGVEGYVESAASGLIAGTNAARLALGQTPIAFPQTTAMGAMAHYITHTSPSHFQPMNANFGIMPPLAVKVRNKKERNQQLAERALNDLATFQTELQGAHQS
1412379..1412391                   attR                                                                                 N/A                 CGCCTATATTTAC
1412464..1413360                   PHAGE_Thermu_P2345_NC_009803: XerD-like integrase; LRHM_RS06755; phage(gi157265299)     5.28e-20            LactobacillusrhamnosusGGMKPLAAFQEYLTVERQYSPETVTAYLNDIQEFQAFLKANGGFTDFSKVDDLDVQTYLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKTVEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLIHGKGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYILDQLIKQTSLIANIHPHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTHVTMAHLKNEYMKYYPKHN

#### region 3 ####
1525113..1525192                   attL                                                                                 N/A                 CACCATCAGGCTTACACTATCCCTGACTCGCTTGGGTTTGGTACAAATGCGACCCTTTTTCTCATCACCGATTCAATTTC
complement(1525338..1526507)       PROPHAGE_Oceano_HTE831: integrase; LRHM_RS07225; phage(gi23097608)                   6.94e-54            LactobacillusrhamnosusGGMASIRSYKLDSGKRRWKVSVYVGIDPKTGRKKYVVKGGKLTRQDAIKAGRNLEKAVQNGELTVAPNPVKVARKFKDVYEEWLKSYKLTVRESSWSKTRDCFNLHILPDLGDMYIDKITPQDVQTAVNKWFKQSPVAFKRYFVHINRILTYAELRDYITHNPARRIILPRVQDKIGSTNDFWDRRQLEVFFNCINPDRELYKYVLFRILAYAGLRIGEAMALEWEDIDFKKRLISVNKTVSLGVHGKLIVNPPKTRASRRDVPVDSETINWLKRWRIEQPDYVYGYVRLSTHHQLLFTTKTGNRFRVDKPRMWLSTIIRNNNLAPVISLHKFRKSYISNLLIAGVAVSTVQKMVGHTDPRITLQIYARVHQEQEVEAAEKLAEYLKTGKK
complement(1526550..1526876)       helix-turn-helix transcriptional regulator; LRHM_RS07230                             N/A                 LactobacillusrhamnosusGGMVMTAKEVHQGRIDRGLTQGELAKEVGLSVGSINSYEHGTRSITKAAESKISLAFKRIKPLNEQPAQATLLAELSDANTRFQWEGTLLRPTEVELIKVIAKTLVDQRK
complement(1527712..1528098)       hypothetical protein; LRHM_RS07235                                                   N/A                 LactobacillusrhamnosusGGMEKLKLNRGMGQLVSPHGYALDATKKYVINLEKESEEQISILEAARMFDLPAILDWHKWLKDNGFDIAPTNDYVSKFFGKEPLWISEKSQGIVVMAENDDDYYVVLECSRQNEGFKYTQIIVTLGGCF
complement(1528289..1529401)       PHAGE_Lactob_phiAT3_NC_005893: putative lysin protein; LRHM_RS07240; phage(gi48697278)     9.25e-178           LactobacillusrhamnosusGGMAAFSFALPTHVKAAKNDIGVDWSVYQGNKGKTVECDRFAISQIGGTQGGTIYNQSTYSSQIKAANDDGLRVHSYLWYGVGGSSDIGRQALDYFLPRIQTPKGSIVALDYEDGASESVEANTDAIIYGMQRIAQAGYTPMLYSYKPYIVAHVDYNRVLSQFPNSIWVAGYPDYQIRVLPLYSYFPSLPGVAIWQFTSMHAVGGLDGNVDLLGITDNGYSKQPAQATTVPSTPSQVTSSDTDYAQNGIFRPSVTLNIRTGDDTSYASIGTYAPGESLMYDHVYIHNGYVWARYLSYSGRYHYICLGVMGGESYGSRSSNYSAPSHTYYTVRSGDSFWSIASKYGVNMYTLAANNGKSIYSLIYPGESLYIR
complement(1529446..1529778)       PHAGE_Lactob_phiAT3_NC_005893: putative holin protein; LRHM_RS07245; phage(gi48697277)     2.18e-43            LactobacillusrhamnosusGGMKDLIVQIAIAVIPILGAWVAKVLLANKQALTLVQVLEPLAQAAVTAAEQLGVTQAITGAVKKSQAVASVETQLKAMGFTKVDQQTIENAVEKAYSDLKNTIEATYPKGA
complement(1529791..1530024)       PHAGE_Lactob_Sha1_NC_019489: phage-related holin; LRHM_RS07250; phage(gi418489822)     3.76e-07            LactobacillusrhamnosusGGMDEQTKMLMEIKEDIAQIKQQLTGLPSTDDKADKAYNASQDNARDISSLKKMVWSIWGVLGGTIGVTLFVYIIEKFL
complement(1530049..1530180)       PHAGE_Lactob_iLp1308_NC_028911: hypothetical protein; LRHM_RS14895; phage(gi971754935)     3.05e-23            LactobacillusrhamnosusGGMTNYDQCALLYSWGIDLTPYVPVMITPDQYKQITGKDYVGGKS
complement(1530173..1530496)       PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; LRHM_RS07255; phage(gi195661216)     2.06e-70            LactobacillusrhamnosusGGMEVDKVKAIFSTDEDGYITGYQQEFWDGTQWQTPFDDEKAILIAPEELKKIAIGASKLADDGTVVIDTDKQAALDKAANQVTPTAEQKLLANLTLEVAQLKAAKSSD
complement(1530506..1533439)       PHAGE_Lactob_Lrm1_NC_011104: host specificity protein; LRHM_RS07260; phage(gi195661215)     0.0                 LactobacillusrhamnosusGGMQWFILSRDQHVLCAPSTDARNSLPIYNDTEDIVLTNNVALSSYTFTVDNTHPDAKKLAVGGYIAYINKYGQTKLCTLIAHDGDDYIQTWNAADIGMDLINEQADKVTYKEAHDFAYYANELLADTGWTLGVNEITTLTRTLSFDGQEDTKLKRIGDIANEFDGAELEFVVKMDGSTITEQVVNAYKEIGNGKTQQRFVDAVNLSALKTSGTIDSLHTAMAGYGSTPTSTTDTGQEQEPITFADIAYDDGRFFSPRGDKVVYDRVAGKTWARLGAFDPQNRSATKGYLVGNYSYDTSNPNELLNRTITQLKSVNTPKESYEADVVDIKADIGDYVQIAHHNYHPPVYLSARVLEVKNHYTVPNSDTAVFGNYSLLESDLDPRIVAMINGLAKQTEKYPWVRYADDDKGTNMSALPAGKKYMAIVWSNKTSVPSDDPSDYAGKWALIKGADGADGVPGAKGADGRTSYFHTAWADDVSGKSGFTVSGGDGKKYIGTYSDFTQADSTNPADYNWALFKGDKGDQGPQGDQGLPGKPGADGRTSYAHFAYANSQDGQTDFSITDPNRKYIGFYSDFTSGDSTNPSDYNWSLIKGADGADGKDGVPGKPGADGKTPYFHIAYADSSDGRTNFSLDTPGSRKYIGSYTDFTQADSTNPALYSWQLVQGPQGETGPQGPQGPQGPQGVPGSKDVPYTYIQLGTPTSPKKGDLWWHGKTLNDATALQYYDGSKWVDQSIQQAVLNIKKLQSIEVDSAEINSPTINVPFTHAPIEGGNILSTGKLALNGTSYTIDGTIEDTKGNPNGQRYHTELNPDGLLSYITQTDGTTKMDVSRISMGTLEFTHLASGLGKSATYISSTLDTVKVLQLANNNQMVWQGAMMPENRDVATMSVPLSQTLTGWLIAWSYFQNGVPTHNNYAFTLIPKAALVYNTTGANYLRVTLTMREVGTTYKLLFYDDRHIVGNGENATGYPAKAVMTEVYAV
complement(1533445..1535502)       PHAGE_Lactob_phiAT3_NC_005893: putative tail component; LRHM_RS07265; phage(gi48697272)     0.0                 LactobacillusrhamnosusGGMKQAGIKITYAGVDITQWMYVQMVERDVGTNHVNTMQKVGISDGQMLQYMSRDVKTIVVTGIVMNDDLVPLRRSLAAAIDADEPQQLIFGDEPDKYYLAIVDSQPTFTEGFRSGTISISFVCPDGGIAHSVATQTADNTPYKDVPVNMLTDSGFESGKTPSGIVWGTSSDDDRTAEVNPAMPSYPTPFGTYMLRIENQSSDSSIDPDQYIVFPLPTPVTIKAGETWTYSYKYAAAGSATGQASDYLTTNGLSPIWGLSMGHGNRDTDGGQDTWHQFSATMTADSDITVTNYRFGFVKTYAGGGWICIDNIKLEKNDTASPWSPNPADPEYYSDTITVTNSGTVPVPVKVTSKFSSDDGFLGLTLNGRYYQVGNTKEVNGKTYDDSQMLVKTRPTIDKYILNDPSFAVIPADQGVMTQTGTVTIKPDPTNQLGITTPSDFGPNNHGPHGPSLIYKLPADSNGEVGAVNCILRMHAGLGALSLDSPSDTRQVGQICMTIYDASKNAMARILYSDMSQTTSDFTVRYDLNGTKVHEEDFSNTPGFTGHCYIRKSGSQFIFAWGGEAGGTAQTYTCEELADTKVMYVSFNFLQWADLPLPHYFGLIEWNFEKDYVDLYKDLPNYFKAGDIVTLDSSTNLLTINQYTDWDRVDIGSQPLLAPPGQSTLGIVVSPWANLPAVSTELREGWL
complement(1535503..1539669)       PHAGE_Lactob_phiAT3_NC_005893: putative minor tail protein; LRHM_RS07270; phage(gi48697271)     0.0                 LactobacillusrhamnosusGGMAQQINATMSTKIALDLLSASESVKSLTAVVRSSQNAWKAQEAEMKSAGDAVGAAQAKYDGLGKSIEAQQSKIDALKAKQAELKGNTADVAQQFLKYQQQIDGANKQLASMQAQQDRAKQAMDYQKSGLAGLQQEYTAAARANQAYVTRLEAEGNQQEANKAKMEGYKSSIANLNEQLSKQSAELDKIASASGKDSDAWRTQKTRVDETATSLAKAKSSMTGLQAEMDKANPSVFNRVKEAISGTNKQAEKTPGLLHKIVEGGLITNAITSGWQTLKGKIEEATAAGMEYEKQQDQMNAIWLTLTGNAEKGQAMVDMTNKLAVKFGQDTDLVNELNQQFYHVFDNQPKTEALTSAFLTMGDAIGLSSDRIQQVGLDFTHTLSGSIVQLGDFNQLTDAFPMMADAMLEYEKKVQHNSQLTMTDLRAQMSAGKISAQDATNVIEELGQKYSKASDNLMQTIPGMTRVIKSRIPALIGDIEKPFLTAQNPVLGAISRWSQDKNTDKEFGKLGQAMSKGLSTITSAFAKAFDLSAGPKAMDKMMDKLSDAVTKVSQSIASHAGQIKTFFTTISTTGSAMAKISWAALTSGLKVLNPLLKSLGDFADKHPKLFGDLAAGFIALNLAGKVLPIAAITGFTKSVGGMYSGLKKLANSKFADMIKTNLSKLNSSALGKGMATITIAYDAISDIKDLTKAFSKGGTVGQKFSSVGESAGTLIGGGIGAFFGGPLGAAIGATIGKVAGKWAGDAAKKFTDGWNAKKKPADSWLGGLGWDARQMTNNVVKWWDGINKSTDAAQKKQQKQQEAANKQAQKDWNGFWNDVGKGWTGFWNDVNKKNSNAQQQQQKQQDAANKQIKKDWDSFWSNASKGWNNFWSDTVKNAQNGMNSTKSGIDNANTSIHKGWDSFWSDTSKNWNGFWGNVGKNAQNGMSTVHGWISDGNSKIDSGWRSLWSGLKSFFGNIWDGIKDAAANGMNAVINVINGAISGINWVWEKFTGKDALRKLSPVHFATGGTVTQKMHLVMVNDGTGPDWKELYQLPNGQIGMSQQRNATGLLPEGTRVFNGKETKAIMNMAGVEHYDLGGVIGGVGKFFSGAWDKLEAVGDWLANPIGKVTDLIKSSISGISGGVEMFSNLASGVINKLTGSVVDWFKKELAKLQDTLGANPGGSGVQRWKPYVIQALKANGFDASDYQVAAWMRVIQRESNGNPRAINLWDSNAKAGIPSMGLVQTIGPTFNAYKFPGHNDVYNGYDDLLAGIHYMKAIYGSGSSAFARVSGPEGYANGGLITQPIHALVGEDGPETILPLTKTSRAWQLLGQAVTNINHNLGNGAVAESESSGTDDLGKKLDNIADLLTKLSFVLQVGDDQFYPKVAPKVKQYNDRRDRFNAYWKGGTV
complement(1539675..1539905)       PHAGE_Strept_YMC_2011_NC_018285: hypothetical protein; LRHM_RS07275; phage(gi399498730)     1.31e-05            LactobacillusrhamnosusGGMPAKAKINPAVKVYELENQLQDFRWMKKQAVMYFHWSMQDFDDADYFEMLEMMSAKDKKDRPVDPAIMWKQYQEKG
complement(1539883..1540233)       PHAGE_Lactob_phiAT3_NC_005893: putative tail component; LRHM_RS07280; phage(gi48697270)     1.76e-75            LactobacillusrhamnosusGGMKIKVSQLSNRVHEVKTSNRNMEKMYDLQLLMAKADDVADMEPVEIIKMQRDMLHDSIDFLTTVLGLNKQEIEKLGDLEFADTIQAVNYTFERMMGMSDEDIDLAAKKQDASKSKD
complement(1540388..1541023)       PHAGE_Lactob_phiAT3_NC_005893: putative major tail protein; LRHM_RS07285; phage(gi48697269)     1.34e-105           LactobacillusrhamnosusGGMATVGLYQIQLALVDAQQKLISGTGAGLGTDGIYTVDHKDLGAKTANITNLAGTIAKTYGNNNVQDVTVGTSEPSVALDINNLDFAIKQQIKGFVSDSKGGYTDENLKAHVALLITTQTIDRLHFVYYGFGDGIMTETAANIQTDAAAEQRVDDTLTYTALTTMAFNNQPYKIYSDIDPKFDKANMYKEVFGGYVLPASSTGSGTTTPAKQ
complement(1541024..1541404)       PHAGE_Lactob_phiAT3_NC_005893: putative tail component; LRHM_RS07290; phage(gi48697268)     9.58e-68            LactobacillusrhamnosusGGMSAVDDAVAMLSQAGIANINAVKGNNLPQELVDNLNETVVLITDAANDPAAYGDNDFWALNQEVEVQIWYSQLLDSDPETIEIAMMKAFTHQHWQVAAVRQRTLDQDTQQLFNTFYFSRTKNIGGI
complement(1541401..1541820)       PHAGE_Lactob_phiAT3_NC_005893: putative head-tail joining protein; LRHM_RS07295; phage(gi48697267)     6.16e-74            LactobacillusrhamnosusGGMDMDDALEEWLKQVSKAAELSISDQEKITKAGADVFAGKLQEATKEKHPDTKGSGGKYGHLSEDISSATGDIDKEHNGNSVAGFGNKAFVARFLNDGTKKIHGDHFVDNARDDAKDAVFAAEAEKYEAIIAKLNGGGDK
complement(1541823..1542167)       PHAGE_Lactob_phiAT3_NC_005893: putative head-tail joining protein; LRHM_RS07300; phage(gi48697266)     3.41e-67            LactobacillusrhamnosusGGMVSSFKPSDFSRTIELGSPKSHTTGAGLNITSFVPAYSLHFKQQKRTLTQQYTLVGTRLDNSITIIVRHDARNIEQKQARLDGIVYDISDISPDDSNNAIRYDYLTLIKTTKGA
complement(1542157..1542447)       hypothetical protein; LRHM_RS07305                                                   N/A                 LactobacillusrhamnosusGGMAEATIDPNKIASDLMSELNLDESELPTIISLVNTAINIINRSSDAPDSDTLTIPAIKTLTQATYYDRGLSNGMPKGLLMMLAHLQASSGGDNNGK
complement(1542519..1544447)       PHAGE_Lactob_Lv_1_NC_011801: protease-scaffold-major head protein; LRHM_RS07310; phage(gi219563201)     9.87e-68            LactobacillusrhamnosusGGMENEDIRTFDVKIRAETGLANENSNNQAENGQNMDISGVAAAFNQPSIKGDFTEYVDQNALNNVDLSQVLLLYAHDFSNILARADAGTLQTSIQPDGLHFNAQLPDTQLGHDTYTNILNGNIKGMSFGFKIAPGGDSWSVNSQGNTIHTINKIDQVFELSLTPIPAYTETSVQVQRDLAQFLSSKKEVVKMAEKPEEKEEQSVDDQKRSIEQLQQQLSDLKAQVKTKVVIDKPEEEKRDATPDMASDETTAQPTSGDLVSMIATLQAAIQSLSQQLADQQAPSQMDDDVPDDDSNVVLDEKKPEQETAETEKRDDKPAEVTAEQDVKQENKRDGAKDMSKNLTADKVEDEEVRDFKEFLKTGEIKRDSTGFDSNAGEAVLPSQVLDIMSQPKDPAQLGGYVTKVQVSAPTGKIPVLSKASAQLVSAAELADNPKLANASLTQVNYDVQTLRGSLPISLEMTQDYPNITSLLTQYINDIKDQTEQHKIGAVLQTATPVAAASIDDIKDAFNVGLSNYTDRMFVVSESFFAAIDKQKDAEGRYLLQDSITSPSGKQLFGAPLVVVADDVLGKSGDAKAFIGSVKNFVVETVKGNINLSWQRNENFEQVLLAALRADFKAADTAAGKFITYTAPVATVPTTTSGK
complement(1544447..1545547)       PHAGE_Lactoc_bIL309_NC_002668: portal protein; LRHM_RS07315; phage(gi13095846)       2.38e-99            LactobacillusrhamnosusGGMSIWNPYERMQKRSMTIPSTNLSSYIISGGQVLPNHLVDASTALNNSDLYAVTNLLSSDIASASFEVAAPFDKVINNPNNLISPFNFWQSAVVQMLLTGNAYIAITRDSNNVPMRLEMAPAAQVVVTLADSSADISYAVNWGDERGTINYPSANMLHFRLMASGSNGQQYIGISPLESIASQVNIQDYANKLTLSTIKNAINPSTVIKVAEGALSPEEKEATRKAFENANTGDNAGRPMVLDQLYDVQNLSINADVSKFLTSNDWSKTQIGKVFGVPDSYLNGQGDQQSSLDMTKSLYSNTLRRYVKPIESEMGAKFGVPVNIDESSAVDADNDLLISQIQKLLSGTTPAITPLQAQQMLAKRGVI
complement(1545544..1545726)       DUF1056 family protein; LRHM_RS07320                                                 N/A                 LactobacillusrhamnosusGGMSKLIMLKELLPTVLFVSGLIAIVTSAYLFNSTIGTLVLGSVLLFCGWLLTPTSKAGGSR
complement(1545850..1547721)       PHAGE_Lactob_Lv_1_NC_011801: terminase large subunit; LRHM_RS07325; phage(gi219563199)     0.0                 LactobacillusrhamnosusGGMPDWTVERAYKQQRDNGAYDKIADKYHDPMTAYAFQVLEGTTMAGQDIKLACWRHLQDLTRISSDDFPYTYDLGKCHEVLNFASICPDVDTGKPLPLMLWQKALLCSSQGWRNEKGERRFHRVQFSVARTNGKTYITNILLAYDYLIASDGMYNQDMGYIAPVVAQSKKGWRYIQLTFDRLGELTDVKRTYKTQQIKTLDDVVRSKKTRNQLLRLSHESGQFDSYHFRLAVADESGDDGRIGTIKENIGKITSGQVQVYDHQFWSISTAYPDSTSSFYLDEKLAREAMQKDYSRDLDDVLLINYSQDSEDEVDDPSSWTKSNPILELKKDTMLPSLVSERDKKKLDGTLDEFKNKNLNMWIKASDNRYLNIHDIENAVADKPPFSISGHDVYIGFDLSKLADDTAVAFIYPYQLAGETHYYIQQHSWVPLSHTGGSIAEKEKQDGINYRQAEQLGFATIAKGRFGYIDEDSVTTWIMSYIEENGLNVKFFVFDRWGTSDVLDKLSQEEPFPLMPLKQTSDKLDKPTHEFKKAIREGRVHYDDDPILKYALTNAVIVGSSAGIKVDKDRATSKIDAVDAVIDAFSRAYYAFSDFDPDADNDKNRSPLSGMSDEERHKFLMNAAF
complement(1547736..1548200)       PHAGE_Lactob_Lv_1_NC_011801: terminase small subunit; LRHM_RS07330; phage(gi219563198)     1.45e-32            LactobacillusrhamnosusGGMGRKMKITQDASDRADQRARTEELAKKTSGMEPLQVTPPRFLQGYAYTAWRELVPLLNAAGLCKQVDKPLVIALCQQIQLSRQAYEDINENGLSTGSRKNPAAAILNDATTKIKSLSDALGLSPQARASIVLDNQDDDDGPTLKQALKAGDKSW
complement(1548682..1549242)       PHAGE_Clostr_phiCD38_2_NC_015568: recombinase/resolvase; LRHM_RS07335; phage(gi333798162)     3.29e-48            LactobacillusrhamnosusGGMIYGYARVSTDGQNLSVQIQTLKQAGAIRIYSEKYTGTTMVRPVFKEMICLMQPGDKLIVTKLDRFARNTKEALEVIQRLFDKNISVMILNLGTIDNTPTGRLVFTVFSAFAQFERDMIISRTQEGKQYARAHNPHFKEGRPNTYSEDDIRKAFRLREKNLSYRRIRRITGISETTLKRRFKQIES
1549648..1550397                   glycosyltransferase family 2 protein; LRHM_RS07340                                   N/A                 LactobacillusrhamnosusGGMIGSSLQPYIYSLNIFILCMSALGLLRMFITFWFANVYDYQFIKYRYAHHRRIKRFSPSISVIVPAFNEEKAIIQTLASICRSTYKKISIVVVDDGSSDNTAILVKEFIEVHPDNDIKLIQQPNSGKSVAINNALFNYDNSVLTMVLDADSLLKEDAIEKMVKWFLNPKIVALAMNVKMLTLPTFIGACQRFEFISAYRGKCAEHVLKTLYIIGGIGSTFRTDKLKNIGGYDTNTPTEDIDLTLKLLSR
1550463..1551959                   PROPHAGE_Xantho_33913: IS1478 transposase; LRHM_RS07345; phage(gi77747808)           1.17e-18            LactobacillusrhamnosusGGMQASFARNAYALGFTLALIADLSEELIMVYRQKATQLSLESFGSALGTPLSPDNEWVQYAELIPWAKLEEAYQLQFPSKTGRAAKPFRLLYGATLIKLKKGLTDRQVVDDIRDTPAYQYFIGLPEYRAKKPFEHTTLVHFRQRLSAISDLIRNITNDFTRERLEADLPEGTHVLISDATAVPVKIKYPQDTTLLNQSRLNLEQMVTDLAHGLGVEIPRTYRREAKGKWTAFSRKPRRQNKERRKQLQAQLQYIRRDLRYVAELLAQGGQLTDWQAQRLEVIKQVYEQQLFMFENHTHHVENRIVSLQQPYIRPIVRGKAKQSVEFGAKIDCSMLDGVIDVERFDFNSFNESTDLEVTLDHAFDLVGEYPDEVLVDTLYRTRDNINLCKKLGIKLNGPKLGRKPKHVDPKQRKADVSAENRRGAIERKFAFLKGSLGLDLVNTRTAESLVVTVDSAIALANIDLLLKLFSVPISIVVEQGGLHYQINYKVTEIRPETAT
1552054..1552500                   hypothetical protein; LRHM_RS07350                                                   N/A                 LactobacillusrhamnosusGGMIKQRYRWKYGRFIAFVKYHNLFFNMDKKFSKMLTFFQLPLAVFQELFMLVEPFVYLYLLFVTIYFQDLGMFIAMVSYVFVVISLSVTASRESLKSKLLLLCTAPFNFFLSYILTIVEYVSLINSILHLHSIVDYNNNHANWSHVERL
complement(1552616..1552894)       hypothetical protein; LRHM_RS07355                                                   N/A                 LactobacillusrhamnosusGGMDNDFEKDVEYVAPGYQPMGQILTPETVIESSEDLLEYRQIINDRLMTRGCDTGLITIQLADLNNEAISQLTDEVKDAGWQVVMEDKNLYIQ
complement(1552887..1553327)       PHAGE_Lactob_Lv_1_NC_011801: HNH nuclease; LRHM_RS07360; phage(gi219563244)          2.42e-31            LactobacillusrhamnosusGGMHEQSWQAKKADYRRSKLAMAIKANKSKEYDKKQRDPKAVAFYHSKQWQAVRDYVYARDLATCQVCGNVVQDRKIVDHIICRRLCSSKQALDSGNLWTLCYKCHFRKTKLEQLIADKPNGDTILKHLNKQWWTKVLKEKKEDKQNG
complement(1553426..1553830)       PHAGE_Lactob_phiAQ113_NC_019782: single-strand DNA binding protein; LRHM_RS07365; phage(gi446730277)     4.82e-21            LactobacillusrhamnosusGGMNSVNLVGNVANSVKSGNNSATAMLAIHRIYSQAKDKQTADFVPIVAFGKMAEVLSNYASKGTRIGISGRIRTGQYERDGKTEYTWQVVAEHIYLLSSKPHNDASKDSSANLSDDLINSLSPKLSGLKDSDLPF
complement(1553817..1554584)       hypothetical protein; LRHM_RS07370                                                   N/A                 LactobacillusrhamnosusGGMLSEKTIKELISTPAFLSNASKLAGMLHMSRQDASQELLIELLSHRLHKWSDKDVEIAIAAESPSLKWKVKYARKDLVRKQAKSASREVEKAQMVAHMTRQASNEAETLEALERLQELFKNKATKSWAESLLRVAQKETMVRFHQTPRQFNNKLVKVCKYARQRQPKQSNSHTKELKLLKEWDDLITDPDTSDSDVQAFIGEHEEYIDNIIDDPQVAFQGHLIKDFAHAGKDKYILVNLMAKREQELKEKSNELS
complement(1554585..1554791)       hypothetical protein; LRHM_RS07375                                                   N/A                 LactobacillusrhamnosusGGMKNKENVTLDTFSILNSAGWFLTIANIAGITQLSWANILNYWLALLGIAVTMGIVTAIIGLRTKGGEK
complement(1554852..1555454)       PHAGE_Bacill_CampHawk_NC_022761: HNH homing nuclease; LRHM_RS14090; phage(gi557478907)     2.97e-17            LactobacillusrhamnosusGGMKVGIITMTSTVNKESNLEFFIKATLKARIKAHDEEEFKQCKPPYSRYKISRNGVVIGPRSNRPIKQYINNSNYVVVGVTKDGSNKHTTVTLSHLLGLAWIPNPENLSDVDHIDDNRLNNALYNLRWVSHRDNLVKEHRRQLMKRANGRPVRKVNDDSSFEVYSSIKEAAEAVGLSNTSVAGSANGTLHLNKPYHFVFAR
1559725..1559804                   attR                                                                                 N/A                 CACCATCAGGCTTACACTATCCCTGACTCGCTTGGGTTTGGTACAAATGCGACCCTTTTTCTCATCACCGATTCAATTTC

#### region 4 ####
complement(2034202..2035578)       PHAGE_Oenoco_phiS13_NC_023560: hypothetical protein; LRHM_RS09575; phage(gi589286272)     6.63e-13            LactobacillusrhamnosusGGMIKKIWSKVSRDSRYSALGIAFLVLLVEHIFMREYVGDAIAVFSHLIDHSSLLSVLYWRYSSWTSRVLIEAPLIRLSSGMHTTTWAVIDTLMWMLLIWSLMALTHYKHNYLVISLVFIYPIIQMQSAGWMATTINYLWPLAMGSYAMVLLDRIYNQKKVGVVPALLALFALAFATNFETFGIMYLCLLTYFSLAMCYFRRFTILGFIFTVLQYAISIANIVFALYSPGNKLRLVTETKDNMLDFSGLTVVDKFVIGVNHAFSEMTDNSFLFLCFAFMIFLVAVTSQRRSKVLVATGIVPLAFVLTRTILKPIVIIYSPKFDQLFNDVADQARVGATNYFNFTSYVPFVLYSLIFAAVLIVLLNAFEKLSTGLFLDVVLISGLLTAVAVGFSPTVYASGPRTLLFLNFSFIYIIVRIYTEQYKYISPKKLLNVFLRWGTAVTAVFFVISNLISIGLTQG
complement(2035820..2037196)       PHAGE_Oenoco_phiS11_NC_023571: hypothetical protein; LRHM_RS09580; phage(gi589286659)     9.70e-12            LactobacillusrhamnosusGGMIRRIGAKIRDNSQLQCLSIAFFVVTLQHLFIREYTGDAATAFSHYLDRTTLLATLHWRYTTWTSRIFIESVLLKLSQNMHIKVWIIIDILMWMLLLWSLMKLTRGRHNYLIMSLVLMIPLSLMNGAGWMATSINYFWPAALGTFALVSLYKIYYHEKANIVTGLVTLLGLAFATNFETYGVMYLCILSFFAVAMILKRRVSTLGVLFTASQYLICIANVGLALIAPGNKARVLVETKFRMLDFANLGPFDKLVMGYTHTFSELTDKNFFFFLFTIMLVVIALFLKSKSRRILVAAFIPFSFVLARTIIAPIAKVYLPEFSALFKDAAEQQRIDALNYFNVMYYIPFLLYVVLLISILLVLCNAFKNFNFGIFLTVVFVSGLLTTVAVGFSPSMYVSGPRTFLFLDIILIYIITIMYEKSKPFISQNMYLNFIAKWGLIAFTVFSVINNFIAIGISYS
complement(2037193..2037708)       hypothetical protein; LRHM_RS09585                                                   N/A                 LactobacillusrhamnosusGGMTDSFKRKVISWLIIGTGLLVALVCVVVQYRSHAVPKVEPVTKFSIMPKKRVKYSIETLGLKNRDYTEISGWIFVKGQEPQKFVTSLVLYTKDSKEVQIFPLKMEDRNDVAKMRGKAGVYNYMNSGFHGYIPIKYMTNEKEKKYKIGFLVANKQQTDLVKTGIDYKVGGVK
complement(2037973..2038815)       PHAGE_Entero_phi92_NC_023693: Phi92_gp064; LRHM_RS09590; phage(gi726646997)          1.26e-43            LactobacillusrhamnosusGGMKILITGAQGQLGTELRHLLDARGITYRATDAKDLDITDEAAVNQYFADYQPDVVYHCAAYTAVDKAEDEAKALNQLVNVDGTRNLAKAAAKVDATLVYISTDYVFDGDSKEIYTVDDQPAPRNEYGRAKYEGEQQVQKYLKKYYIIRTSWVFGEYGHNFVYTMLNLAKTHKELTVVDDQYGRPSWTKTLAEFMTFAVDQHLDYGIYHLSNDNSCNWYEFASAILADKDVTVKPVSSAEYPQKAWRPRHSILDLSKTKATGFEIPTWQDALKDFLKIVDK
complement(2038875..2039900)       PHAGE_Synech_ACG_2014f_NC_026927: long tail fiber distal subunit; LRHM_RS09595; phage(gi100279)     6.53e-45            LactobacillusrhamnosusGGMKLMITGGAGFIGSNFVHFVYKNHPDVQIMVLDKLTYAGNKANIEDVLGDRVKLVVGDIADKELVDKLMGQVDTVVNFAAESHNDNSLINPDPFLHSNVIGTYTLLEAARKYDVRFHHISTDEVYGDLPLREDLPGHGEGPGEKFTINSRYNPSSPYSSTKAASDMLVHAWARSFGVRATISNCSNNYGPYQHIEKFIPRQITNILNGIKPKLYGTGKNVRDWIHTNDHSSAIWDILTKGKIGETYLIGANGEQDNKTVLELILKLMGKPTDYYDQVKDRPGHDMRYAIDASKTREELGWKPQYTDFEEGLADTIKWYTDHRSWWQDEKSAVEAKYKQNGQ
complement(2039903..2040475)       PHAGE_Entero_phi92_NC_023693: Phi92_gp065; LRHM_RS09600; phage(gi726646998)          2.66e-44            LactobacillusrhamnosusGGMSLKVIPTKLKDVKLVETDVFGDNRGFFTETYTREKFVEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHLIMSEKDQHHPQLKDAENNFVYGEI
complement(2040489..2041361)       PHAGE_Entero_phi92_NC_023693: Phi92_gp066; LRHM_RS09605; phage(gi726646999)          7.81e-125           LactobacillusrhamnosusGGMKGIILAGGSGTRLYPITEAISKQLVPVYDKPMIYYPLSTMMLAGIRDILVISTPRDIDRFQDLLKDGKQLGLNISYKIQEKPNGLAEAFIVGADFIGDDSVCLILGDNIFYGSGLSKLVQRSAAKTTGATVFGYQVNDPERFGVVAFDEQHHVQSIVEKPEHPESNFAVTGMYFYDNQVVDIAKNLKPSPRGELEITDVNKAYLERGQLDVELLGRGFAWLDTGTHESLHEAASFIETVQKRQNLKIACLEEVAYRMGYIDRDQLRKLAQPLKKNDYGQYILRLADEEA
complement(2041728..2042177)       lysozyme M1 (1,4-beta-N-acetylmuramidase); LRHM_RS09610                              N/A                 LactobacillusrhamnosusGGMYASGPFFTSVATAVGNTNAKALNGQHFTAFEEDKTAKGTFVKVKLNDGSVYWTDKRALAIDKYDKILSDKKVDYSGVINQSSSADGLYVSGPFFTSVATAVGNTNAKALNGQHFTALEEKRTAKGTFVQIKLANGSLYWIDKRALDIA
complement(2042196..2043449)       PHAGE_Lactob_c5_NC_019449: putative endolysin; LRHM_RS09615; phage(gi418488198)      6.23e-23            LactobacillusrhamnosusGGMKNFTIGDSSVPRNDVVDVSDWQSWMTQNDYTQLHNLGIKGVVVKVTEGTYYTNGIAANQIKFARNAGMVVSAYHYATFDSASAAVAEANYFANRLDSLNVGKNVTVVADIESDAVSGDIAGNLKAFWQTMTQRGYQNHVAYTMRYYKHLDALTSTTGKDRTWIAQYPYTPSANSLWDQDFGAWQFSSTGHLPGHSQNLDVSIDYQGLFTRENGAASTSTAPSSVSYDPIVSQKTVSYSGSLDQSVRADGLYASAPFYTSAATSVGNTAAKAYNGAHFTALQEETTAKGTFVQIRFNNGSVYWIDKRALAIEQYDTVTSKTPVSYTGSLDQNSRADGLYTAGPFFTSVATAIGNTNAKALNGQHFTALEEDTTAKGTFVEIKLNDGKIYWVDKRALAIDRYDKVISTTAVSYTGSFD
complement(2043486..2043689)       hypothetical protein; LRHM_RS09620                                                   N/A                 LactobacillusrhamnosusGGMKKGALWTSAAIASSFLCSTLILGTPTFAAENSGATISAQSSLNESQMSGGMQKSVLDAGNNTTTTG
complement(2043749..2045245)       PROPHAGE_Xantho_33913: IS1478 transposase; LRHM_RS09625; phage(gi77747808)           1.16e-18            LactobacillusrhamnosusGGMQPLFARNAYALGFTLALIADLSEELIMVYRQKATQLSLESFGSALGTPLSPDNEWVQYAELIPWAKLEEAYQLQFPSKTGRAAKPFRLLYGATLIKLKKGLTDRQVVDDIRDTPAYQYFIGLPEYRAKKPFEHTTLVHFRQRLSAISDLIRNITNDFTRERLEADLPEGTHVLISDATAVPVKIKYPQDTTLLNQSRLNLEQMVTDLAHGLGVEIPRTYRREAKGKWTAFSRKPRRQNKERRKQLQAQLQYIRRDLRYVAELLAQGGQLTDWQAQRLEVIKQVYEQQLFMFENHTHHVENRIVSLQQPYIRPIVRGKAKQSVEFGAKIDCSMLDGVIDVERFDFNSFNESTDLEVTLDHAFDLVGEYPDEVLVDTLYRTRDNINLCKKLGIKLNGPKLGRKPKHVDPKQRKADVSAENRRGAIERKFAFLKGSLGLDLVNTRTAESLVVTVDSAIALANIDLLLKLFSVPISIVVEQGGLHYQINYKVTEIRPETAA

#### region 5 ####
complement(2080645..2082795)       PHAGE_Klebsi_K64_1_NC_027399: hypothetical protein; LRHM_RS09770; phage(gi849122351)     9.97e-143           LactobacillusrhamnosusGGMANFNDPFFNHDMDDVFNQMLQGMGKGESARYVVNGHEMTPDEFAQYRATGQLPKQGDEIPVETTGEQAVKKGGILEKLGRNLTQEAKDGLLDPVIGRDHEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQAIVKGNVPESIKDKQIWSIDLSNLEAGTQYRGSFEEKIQNLIKEVKAAGNVLLFFDEIHQILGAGATGGEESGGKGLADIIKPALSRGEITVIGATTQDEYRNTIMKDSALARRFNDVTINEPSAADTVKILEGVKKLYEQHHHVQLPENVLKAAVDYSIQYIPQRSLPDKAIDLIDMTAAHLASKHPIVDKVELEKQIKDLNAQKDAAAKAEDFEKAANLKKEIADKQHQLEGTNNEKPVVATPNDVAAAVERLTGIPVSKLGASDIERLKGIGKRLKGKVIGQDEAVDMVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYSDRTAVSKLIGTSAGYVGYNDNKNTLTEQVRRNPYSIVLLDEIEKADPQVLTLLLQVLDDGRLTDGQGNVVDFKNTVIIATSNAGFGNEALTGEKEKDEDLMKRLAPYFRPEFLNRFNGIVEFSHLTKNDLGKIVDLMLEDVNKTLAKKGITLTVTDAAKDWLIAQGYDEAMGARPLRRVIERNIRDKVTDFYLDHLKAKKLQADLIDGAIIVSEVQPASDKPKKEASGAK
2082860..2083144                   hypothetical protein; LRHM_RS15105                                                   N/A                 LactobacillusrhamnosusGGMHKILLLSTRSQGQKPACKGLGCTGQNPTSTSKATYTPVSKRPCSRSTKKHSQALWQYFRVVLIHLLALILLRLFLVYIMYYSMKLALTQPEC
complement(2083186..2083950)       tyrosine protein phosphatase; LRHM_RS09775                                           N/A                 LactobacillusrhamnosusGGMIDVHCHMLPGIDDGSKDLTTSLELAQAAVADGITHALMTPHHMNGRYTNHAADVIRMTDEFQDELDRRNIPLTVFPCQEVRINGQLLEAIDHNDILTCDVSGHYVLIEFPSDDVPLYTQNMLFEVMQRGMIPVIVHPERNTRLMKHPGLLYQMVERGAFAQVTASSYVGTFGKKVQQFSEDIIDAGLAHVFASDAHHLPGRSYEMSAAFKRLTRKRGEKKARIFEENARALVNGDPLVRFNERKVEKRLLSRY
2084107..2085000                   transcriptional regulator; LRHM_RS09780                                              N/A                 LactobacillusrhamnosusGGMKKILVRVLLVVLVAALGFGGFVYYMVHNSTSQIYSYNKKTNKSSDDKTTSKKPVAYLLLGTDTGELGRSYKGRTDTMIVMVLNPKSKTTTMVSVPRDTKVDFDDVTIKINAAYSYGSSDTAMEAVEKLLNIKLDGYLLVNMKGLEQMVDAVGGVTVTSPLSFDYEGKSFVKGQSYNLSGSDALKFSRMRYDDPQGDYGRQMRQQLILTSVIGKLKKNPTTVLSQSFLDAVGKNVRTDVSLGSVKNLAMDYRDAGNTIKSDQLHGTGQNIDGQDYEVMSDSELTRVHDVIQNALNAK
complement(2085099..2086124)       PHAGE_Synech_ACG_2014f_NC_026927: long tail fiber distal subunit; LRHM_RS09785; phage(gi100279)     1.59e-44            LactobacillusrhamnosusGGMKLMITGGAGFIGSNFVHFVYQHHPDVQIMVLDKLTYAGNKANIEDVLGDRVKLVVGDIADKELVDQLMGQVDTVVNFAAESHNDNSLINPDPFLHSNVIGTYTLLEAARKYDVRFHHISTDEVYGDLPLREDLPGHGEGPGEKFTINSRYNPSSPYSSTKAASDMLVHAWARSFGVRATISNCSNNYGPYQHIEKFIPRQITNILSGIKPKLYGTGKNVRDWIHTNDHSSAIWDILTKGKIGETYLIGANGEQDNKTVLELILKLMGKPTDYYDQVKDRPGHDMRYAIDASKTREELGWKPQYTDFEEGLADTIKWYTDHRSWWQDEKSAVEAKYKKNSQ
complement(2086127..2086699)       PHAGE_Entero_phi92_NC_023693: Phi92_gp065; LRHM_RS09790; phage(gi726646998)          2.58e-44            LactobacillusrhamnosusGGMSLKVIPTKLKDVKLVETDVFGDNRGFFTETYTREKFIEAGIKNDFNQDNQSLSAEAGVLRGMHYQMAPYAQTKLVRVVTGVVEDVLVDIRKGSPTYGQWEGYILSQYNHRQLLVPKGFAHGFITLTPNVNFVYKVEGYYAPEADRGIAFDDPDIGIDWPMSTAHLIMSEKDQHHPQLKDAENNFIYGEI
complement(2086713..2087360)       PHAGE_Escher_phAPEC8_NC_020079: putative glucose-1-phosphate thymidylyltransferase; LRHM_RS09795; phage(gi448260372)     2.00e-83            LactobacillusrhamnosusGGSYKVQEKPNGLAEAFIVGADFIGDDSVCLILGDNIFYGSGLSKLVQRSAAKTTGATVFGYQVNDPERFGVVAFDEQHHVQSIVEKPEHPESNFAVTGMYFYDNQVVDIAKNLKPSPRGELEITDVNKAYLERGQLDVELLGRGFAWLDTGTHESLHEAASFIETVQKRQNLKIACLEEVAYRMGYIDRDQLRELAQPLKKNDYGQYILRLADEEA
complement(2087374..2088870)       PROPHAGE_Xantho_33913: IS1478 transposase; LRHM_RS09800; phage(gi77747808)           1.16e-18            LactobacillusrhamnosusGGMQPLFARNAYALGFTLALIADLSEELIMVYRQKATQLSLESFGSALGTPLSPDNEWVQYAELIPWAKLEEAYQLQFPSKTGRAAKPFRLLYGATLIKLKKGLTDRQVVDDIRDTPAYQYFIGLPEYRAKKPFEHTTLVHFRQRLSAISDLIRNITNDFTRERLEADLPEGTHVLISDATAVPVKIKYPQDTTLLNQSRLNLEQMVTDLAHGLGVEIPRTYRREAKGKWTAFSRKPRRQNKERRKQLQAQLQYIRRDLRYVAELLAQGGQLTDWQAQRLEVIKQVYEQQLFMFENHTHHVENRIVSLQQPYIRPIVRGKAKQSVEFGAKIDCSMLDGVIDVERFDFNSFNESTDLEVTLDHAFDLVGEYPDEVLVDTLYRTRDNINLCKKLGIKLNGPKLGRKPKHVDPKQRKADVSAENRRGAIERKFAFLKGSLGLDLVNTRTAESLVVTVDSAIALANIDLLLKLFSVPISIVVEQGGLHYQINYKVTEIRPETAA
complement(2088939..2089166)       PHAGE_Entero_phi92_NC_023693: Phi92_gp066; LRHM_RS09805; phage(gi726646999)          1.11e-30            LactobacillusrhamnosusGGMKGIILAGGSGTRLYPITEAVSKQLVPVYDKPMIYYPLSTMMLAGIRDILVISTPRDIDRFQDLLKDGKQLGLNIS

#### region 6 ####
2943899..2943913                   attL                                                                                 N/A                 TGGGTGGTCAGGGGA
complement(2944011..2945168)       PROPHAGE_Oceano_HTE831: integrase; LRHM_RS13790; phage(gi23097608)                   7.24e-66            LactobacillusrhamnosusGGMASIKKYATKDGKEFWRVQVFAGNDLQTGHKKYKVRRGFKTKKEATVAAARLELAISNGDLEEEKPKPVFFRDVYEEWYGNYINTVRESTWARTAGMFNNHILPAFGGKRIATITTKDVQKAVKRWFEFTSANYKRWYNYVSSVMDYAVRQGYMSKNPAKAVVLPHHDDLAGDKPENFWTKEQMNHFFACIDQENHFDVFIMFRVLAFTGVRRGELLALTWNDVSFKENSIKVNKTLTQGDKGHQIVQAPKTRAGRRTIPVDGQTMAYLKRWRRIQQETFLQLGINTMQPNQLLFTNTKNGYQSLNTPSKRLHKLQDDNGLTPRITIHGFRHSFISNLLIAGVPVTSVQKLVGHTDPTITLGVYAHVSAKQESEATAALAKYMQN
complement(2945286..2945897)       PHAGE_Lactoc_bIL311_NC_002670: repressor; LRHM_RS13795; phage(gi13095660)            8.34e-15            LactobacillusrhamnosusGGMTKLLEPNSHLSLGERIKSIRISKGETMEEFALSVGLTSSGKSAVSRWERGLSAPSADTMKKIANHGGISVQFLVTGKPAFEDLPEDQQMELRKQRDEWLHNLEVNSENLWTELFSDDYVKKLTWQEKTFLENSMRFVQLMKPERQNVAIMKFSSIVAGIIRARTHDYSADQIEEMKTDFAKELSDIIDISQKSPTQKIQDYE
2945976..2946224                   PHAGE_Lactoc_bIL311_NC_002670: ps3 protein 14-like transcriptional regulator; LRHM_RS13800; phage(gi19343481)     4.38e-14            LactobacillusrhamnosusGGMNVDVNRKERAIMQRIKGYRVMLNLSQQDVAKELGISRQSYWSKENGRTSFNDKEKTKIRDLFRKTGIPVTIDSLFFDGKVD
2946249..2946524                   helix-turn-helix domain-containing protein; LRHM_RS13805                             N/A                 LactobacillusrhamnosusGGMALMKAQITLPADFDQILQERIHREVVRVMNETKQQPMQKKLNIGQAAAYAGVARNTLLSWTKKGLLVQVVGGVKRINTADIDDYMNNHGK
2946592..2946813                   hypothetical protein; LRHM_RS13810                                                   N/A                 LactobacillusrhamnosusGGMNLFSKEEIALDHELGNLIDDIQLNVHAIAEDSTVTVDGKYISNSELAVTTAKELLRVSEILKLYENEDDADD
2946924..2947115                   hypothetical protein; LRHM_RS13815                                                   N/A                 LactobacillusrhamnosusGGMARMASTRLGFQWHDYVQADAECDRYWAFKKAERRSLHEATKKSPRVVPQGEKKTSEKIYIDF
2947160..2947432                   hypothetical protein; LRHM_RS13820                                                   N/A                 LactobacillusrhamnosusGGMMKNVSNSTKAPDLGEASFDLSTAKGLLEALRDQFDTMEGSVVSYRNNRTENAAILAYSTNRSFYTWMALLKAIQEYVESSLATIDEVNK
2947429..2947617                   hypothetical protein; LRHM_RS13825                                                   N/A                 LactobacillusrhamnosusGGMMKEDYYTTAQALLSDTSAMVNILRHQINDEQQSALADTVADMIIDARRLLLEGDVADGRRA
2947601..2948428                   PHAGE_Lactoc_bIL310_NC_002669: hypothetical protein; LRHM_RS13830; phage(gi13095885)     6.07e-26            LactobacillusrhamnosusGGMVDVLKVALGYQQHGFAVYPLAPETRTPLAGSHGYKDATKDPEQAKKWWGEHPNYNIGLGLDGVLVFDIDMGHKSGANGNDTLAKLSAEGRADQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDLFSKNGEKTGLDYIATGVPVFPSIRENGMYQPLKGHKITKLAPVPQWLLDEIQRVSHPNPVFGGSTVYRGKRWTGKLLDEIVNGTSTGNRNDFLTKIAGKMFFTGAEPQTVYNLLFTTNDNYLDTPLAESEVNKIFKSVLKAEERRRAVG
2948421..2949845                   PHAGE_Staphy_2638A_NC_007051: ORF003; LRHM_RS13835; phage(gi66395453)                1.14e-72            LactobacillusrhamnosusGGMVKAMPEDIKQEANKVVNVDFTGQEQWRNDLKLDGNGGIRKDSVVNIQLLLDNDQAFANVVAWDDFSEMLIKTKGVKGLPIRKGFWTDEDDAVVRSYMERKHNLLFSKQNEQDAMVVVGKEHSINPVKDWIEAEQWDGTPRAERYFIDYLGAEDSEYTRAVTRKWLAGAVKRVYQPGCKFELVPILEGKQGLGKSTAARNLFPTKFSDSLKSMGKTDEDYKKLQGNWIMELGELSAMKKTEIESAKSFISAQSDSYRGSYSHYVYPHLRKCVFIGSTNQQDYLKDATGERRFFPIRCGVTKPTKTVWRNEESVPKINHDIHQVLAEVKTWVDAGESVFADDKLMQLAKPYQQEAETVDPMKEAIEDFLNMKVPSNWENLSLSLKASFFHTHIDHNGDVATWLQQHLDAGELQPLQQTTTREIMEVVFDKSVDRYLMGRTGSEAKRIKLIMDNMDGWDRERVRINGQRSRGYVRK
2950125..2950547                   PHAGE_Strept_315.2_NC_004585: hypothetical protein; LRHM_RS13840; phage(gi28876240)     5.13e-22            LactobacillusrhamnosusGGMLYPESTWARFEQEFPIPEKYRKYYEYKNWHIEPKSSDLSQFEQDHPFAFMLMPEDMQNALYLWTKGLAKRKTINSDYTSYGIKHLFTDLPGGFYITNGMMKGALLAAGFEIADYAELNWRANISGRSIKEQIKLAPHIS
2950578..2951003                   PHAGE_Staphy_phiPV83_NC_002486: phi PVL ORF 63 homologue; LRHM_RS13845; phage(gi9635713)     3.49e-20            LactobacillusrhamnosusGGMQMSVPLHICMHPGCRRMIPFNQRFCEEHKQDKSKQATNQERMQYEEKELRFYKSTTWTKLSKSFRLRNPTCASCLKRGIIRQAVLVDHIEPIKTAYGWQHRLDESNLQSLCQTCHNAKTAREVAQRRMRSPDRSTPAPKF
2951128..2951598                   PHAGE_Staphy_phiPV83_NC_002486: phi PVL ORF 1 homologue; LRHM_RS13850; phage(gi9635714)     1.30e-21            LactobacillusrhamnosusGGMGAPLKSVTNLSAHLSKKQLADRVASEKALFTYKELQVQPPTWLDDYAVTEWHRIVPLLKKDIPVSELDAALIASHCQAYSDIQKAAELVQEQGMMVETTDSVKANPAVKMKLDATNQMMRIDEVLGLSVYSRAKLALKSETKKKPDDPFAELVSS
2951595..2953298                   PHAGE_Lactob_LF1_NC_019486: bacteriophage terminase large subunit; LRHM_RS13855; phage(gi418489385)     3.51e-140           LactobacillusrhamnosusGGMNYATEYTDKVLSGEIVAGKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAIEFIELMPARDGSPLKLELFQKYLISELFGWRDKETGNRRYDRAYISMARKNGKSFLMADLGALYLLMENKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRAVPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGPMYKEYKFVSKILTGREQADRYFIAIFEQDSKAEAFAPETWEKSNPLLANAERAKTMRPSLQADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKATIEPPDTREKDVYIGLDLSKSSDLTSISWLVPEDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLESGMIDYDEVLRFILDLIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIPTTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMNAYTIAMDQNKESEVADNDFYSSDDFGF
2953264..2953443                   hypothetical protein; LRHM_RS13860                                                   N/A                 LactobacillusrhamnosusGGMTFIRAMTLVFNLQTVLLILGLICMVAGIWWLFGFGVGMLAVGTALISVAVIINFNKGR
2953448..2954632                   PHAGE_Staphy_phiRS7_NC_022914: portal protein; LRHM_RS13865; phage(gi560185961)      1.39e-71            LactobacillusrhamnosusGGMSFFTNSATQPRDDNSDPFLDALVSMTSNDSGLYVGIGALRNSDVFTAVRVIAGDLATNPIEYSDKRISVLLNKAPNDHMTAWGFKFALATNMLLNGNSFARVTKNPSGQVTGFELVPNSQMVVKQDDTTGIISYEYTPDSGRSQRLNASEVLHFKCFTQDGYKGLSPLYSLHDEVGVQKSGHALLKGFFNSGVQGTGILKVNKTQLDTKAKENIRNKFEAANSGDNALKTIILDNDMDYKQLEVNTDVLNLVNSSDWTTKQIAKAFGLPLDRLGIESEHSNAVQSNVMYLQNTLIQYFTCFTSEMDAKLSTGDNRFSFNTDKLFSADPATMQELAVKGLQGGVLTTNEARAKLNLPPIPGGDEIMASLNYTPLSNLTSYQNTRQRSDPENESR
2954619..2956178                   PHAGE_Entero_IME_EF4_NC_023551: major capsid protein; LRHM_RS13870; phage(gi589893039)     6.42e-45            LactobacillusrhamnosusGGMNQDDVEKRLNPNAGLTAKADDSQGQDDPDTKKQDDTTNGPKKLSGYAVVFNSPSKDLGGFKEVVDPHAFDHVDLSDVYMVSNHDFSQVLASTKAGTLTLNVDDKGLQFEATLPDTTTASDAYNNVQAGNLSAMSFTFNAAPDGDTFTKDDSGQVIRTIKQVKSLFDVSLVAIPAYDDTNVQVDKRSYTEWLKDHVEDPEQQLPPTEKRKGVNHMTEKTIIDKEEHTESRAYEDYIRSMGEQRDGLTTTTAGAVVPKEVINDVWDLKQSDYDLAKYVTVKQVGTPVGTYPIALTNNGVLATKKELADVADVDANMFKGVDYKVATRAGKIYLSNELVEDSEVDIVAEVKNQLKKLVQNTDNSNIISVLTGKSTTGDNFKHLTGTGLDDLKKTFNIELDPALSLSVIVNQDAFNYLDTLKDSQGRYLLQPSITAPSGKQLFGAPVIVVANKVLPTDKVGTYRIIIGDFSQAIFLAQKNEVNTQWERFDSYSQGLAVVIRNDYEVVDPDAARIVDITPVKA
2956240..2956530                   PHAGE_Entero_EFAP_1_NC_012419: head-tail joining protein; LRHM_RS13875; phage(gi225626391)     1.79e-11            LactobacillusrhamnosusGGMSVTTEDLKKALRISHSEDDAMLSAYLLTAKQFVISAVDQTLTDENFGDDPRFDFAVSLLAQHWYINRGVDGATYVPDSVVSMIQQLRGVDYATGK
2956514..2956855                   PHAGE_Lactob_A2_NC_004112: putative head-tail joining protein; LRHM_RS13880; phage(gi22296529)     8.50e-18            LactobacillusrhamnosusGGMPLVNSISQLNEPITLVSYTMGNVNGVPVSNVRKEHFTTWALVLSQYLSEVRASVGTKLEDTVTFVVRYDQPETILNSWRIEWQGKKYDIVKLTPDTAKKQWTTIIGKPVANK
complement(2957530..2957778)       GlsB/YeaQ/YmgE family stress response membrane protein; LRHM_RS13885                 N/A                 LactobacillusrhamnosusGGMHFLWALIVGAIIGAIAGAITSKGKSMGWFANIIAGLVGSAIGEGLLGHWGPQLAGMALIPSIIGAIIVVAVVSFFVGRSKD
complement(2958028..2958100)       tRNA                                                                                 N/A                 GGGTGGTTAGCTCAGCTGGCAGAGCAACGGACTCTTAATCCGTGGGTCCAGGGTTCGATCCCCTGACCACCCA
2958028..2958042                   attR                                                                                 N/A                 TGGGTGGTCAGGGGA
complement(2958306..2959226)       PHAGE_Cronob_vB_CsaP_GAP52_NC_019402: putative ribose-phosphate pyrophosphokinase; LRHM_RS13895; phage(gi414087562)     2.24e-20            LactobacillusrhamnosusGGMHELKLFSLNGNRPLAEKIAAEVGLPLSPARVNHFADGEVQIELPESVRGADVYVIQSVSDPVNENFMELMIMVDALRRASAHHINVVISYYGYARADRKARSREPITAKLVANMLEMDGVDRIVAVELHADQIQGFFDIPVDHLKAHRLIGDYFRKLNLGDNVVVIAPDHSGTKQARALAEELHTPIAIVDKRDQEHIGVIGNVEGMHAIVIDDLIDTGDRIVDSYKALSAAGALDVYAAATHGVFSRGAVDRIKHLGLKKVVITDTIQLDPKHQFEGLDQISVGPMLGKAIKLINSNQSIHVLF
