Submission Results
Sequence Name: Not Available
GenBank Accession Number: 420261314 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 420261314.PHASTER.zip
gi|00000000|ref|NZ_AKKS01000002.1| Enterococcus sp. C1 contig2, whole genome shotgun sequence. 543819, gc%: 44.19%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 8.6Kb | incomplete | 10 | 8 | 497874-506571 info_outline | PHAGE_Bacill_G_NC_023719(2) | 43.15% | Show info_outline |
Region DNA
>1 497874-506571 TTGATTACAGTAAGTGATGTAAGTTTGCATTTTTCAGACCGCAAACTGTTTGATGATGTT AATATTAAGTTTACGCCTGGTAATTGTTATGGTTTGATTGGTGCAAATGGTGCTGGTAAA TCAACTTTTTTAAAAATTTTATCTGGTGAGATCCAACCTTCGACCGGGAACGTTTCTTTA GGTCCTGATGAACGGATGGCTGTCTTGAAACAGAACCACTATGATTACGAAGAGTTTCCA GTGATCGAAACGGTCATCATGGGCCATAAACGTCTCTACGAAGTGATGAAAGAAAAAGAC GCGATCTACATGAAGGAAGACTTTTCTGATGAAGATGGGATTCGTGCCGCCGAACTAGAA GGCGAATTTGCGGAACTTGATGGTTGGGAAGCAGAGCCAGAAGCAGCCGTTCTTTTGCAA GGCCTGAACATTCCCGATGAATTGCATCATGTCTTGATGAAAGATCTAACTGCTGGTCAA CGGGTAAAAGTCTTACTCGCACAAGCCCTTTTCGGTAAGCCAGACGTCTTGCTCCTAGAT GAGCCTACCAACGGATTGGATATCCAATCTATCAACTGGTTAGAAGAATTTCTAATCAAC TTTGACAACACTGTCATCGTTGTTTCCCATGACCGCCACTTCTTAAATAAAGTTTGTACC CATATGGCCGATCTAGACTTCGGCAAAATCAAATTGTTTGTCGGCAACTATGATTTCTGG TTGGAATCAAGCCAATTAGCGGCGAAATTACAATCACAATCAAATGCCAAAAAAGAAGAG CAGATCAAAGAACTGCAAGACTTTATCGCACGCTTTAGTGCCAATGCATCAAAATCCAAA CAAGCAACGTCTCGGAAAAAAATGTTGGATAAAATCACCCTTGATGATATTCAACCTTCG TCCCGCCGTTATCCGTTTGTTGGTTTTAAACCAGAACGTGAAATCGGGAATGACTTGCTG CAAGTCGACAATGTCAGTGTGACGATCGACGGCAAAAAGATTTTAGACAATATCTCTTTC ACCTTGAATAAAGACGACAAAGTCGCTTTTGTTGCCAATAGCGATATCACCACCACGACG CTATTCAAAGTCATCATGGGGGAAATCACTCCTGATACAGGTAGTGTTCGTTGGGGCGTC ACCACGCAGCATGCCTACTTGCCAAAAGATACGACCAGCGAATTCGATACGGATACCCCG ATCGTTGATTGGCTGCGTCAATACGCAAGCAAAGAAGAAGACGACAATACCTTCTTGCGC AGCTTCCTAGGTCGCATGTTATTCTCTGGTGATGAAGTATTAAAACCCGTCAACGTTCTT TCCGGGGGCGAAAAAGTTCGCTGTATGTTGTCGAAAATGATGCTTTCAAAAGCCAACGTA TTGGTGTTGGATGATCCAACCAATCACTTGGACTTAGAATCGATCACCGCATTAAACGAT GGTTTGATGGCCTTCACCGGCTCATTGTTGTTTGCTTCTCATGACCACCAATTTATTCAA ACCCTTGCGAACCGTATCATTGCGGTCTCTAGCAAAGGCGTGGTGGATCGTGCCGAAACG ACCTACGATGAATTCTTAGAAAACAAAGATGTCCAAAAACGCGTAGCAGAAATGAATCAA TAATCTGCTTCTACAAAAAAGAACGCTCCAGTTGCCTGCCACCAAGGCTGCAACTGGAGC GTTCTTTTTATTTTGTCTAATACTTCGGGCATGTTGGGCAGGTTACGCTTGTTCTAAACG GGCTTTGCCGAATGAAAACAGCGCCAAGCAGCCGTAGCCGGTATGACTGGAGATCGTTGG ACCTAATGGATAATGATGAATAATAATGTCAGGAACTTTTTCGGTCAAACGCTTGATGAG TTTCTCCGCTGCTTCGGCATCGCCAGCATTGGCAAAATAAACCGTATTGGTTTTTGATTC GTGAAGATTGGCGATGGTTTGATCCACGATTTTTTGGATCGCTTTGTTGCGTCCCCGCAC TCGATCAACGCTACGTAATTTTCCCGCGGTATCTACGGTAATGATTGGTTTCACATTCAA CAATCCACCGATCGCTGCGGCTGTTTTAGAGATTCTGCCGCCGCGTTCCAATTGTTTTAA ATCATCGACGGTGACCCATGAATCTAAACGCAGTTTATTTTCTTCTACCCATTGGCTGAC TTCCAGCAACGAACGCCCTTGGGCTTTTTGTTGGGCTGCTTCAGCCACTAAGAAGCCTTC GCCTAAACTAGCAGAGCGCGTATCGATCAAGGTGATCGCGACTTCTTTGTATTCTTCTTT TAGTAAGGCTACGGCTTGGACGGCACTTTGGAATGAGCCGCTCATTCCTGAAGAAAAACC TAAATAAAGGACCGGTGTGCCCGCTTCGACATATGGCCGAAAATATTCCATATAACGTCC GACATTGATTTGAGAAGTCGTCGGTTGCGCATGCTCTTTTAGTTTTCCTAAAAACCATTC CGTATCAAATTCTTTGCCCATATCATCGATATATTCTTTGCCATCTAATTCAATCAGCAT TGGAATATAGGCGACATCTAGCTCCGCTAATCTTGCTGCTGGTAAATCACAGCAGGAATC TGTCATGATTTGAAACATGGTTTCACCCCTCTCGTTACCCCCTATTATAGCAAAAAAAGA ACAAGACAGAAGAAATTCTCATCAAAAGCAGCCAAACTTATCGTTGACCGCTTCTGACAC AGAAGTTCTTTGTCTTGTTCTGATGCTTTCGCGTCAGGTTAAATTTGCGCCCAAACACTT TCTAAGATGTTGGTTTGGCTGCGGTCTGGCCCTACCGAGAAGGTCGAAATGCGGACACCG ACTAATTCAGAGATGCGGTGAACGTAATTGCGTGCATTTTCTGGCAGATCTGCCAATGTT TTGCAGCCAGTAATGTCTTCAGACCAGCCAGGAAGTTCTTCGTAGACTGGTTTGCAGCGG TTCAACTCTTTCAAGCTTGCTGGATAATGATAGATCAATTCGCCGTCTAGTTCATAAGCG GTACAGATTTTCACGGTTTCTAAACCGCTCAAGACATCGATCGAGTTAAGGGATAGGTTC GTGATCCCTGAGACCCGTTTTGAATGGCGCATCACGACGGTATCAAACCAGCCCACACGA CGAGGTCGTCCTGTCGTTGTCCCGTATTCACGACCTATCTTACGAATTTGTTCACCTGTT TCATCAAACAGTTCCGTTGGGAATGGACCATCTCCTACCCGAGAGGTGTAGGCTTTGCAG ACACCAACGACTTTGTTGATTTTTGAAGGGCCCACACCACTACCGATGGTGACACCTCCA GCAACGGGGTTGGATGACGTTACGAAAGGATAGGTTCCTTGGTCGATATCCAGCATCACG CCTTGTGCCCCTTCAAATAAAACTCGTTTGCCTTCATCTAAGGCATCGTTAAGGATCACC GAAGTATCCGTCACATATTTTTTGATTTGTTGGCCATATTCGTAATACTCTTCAAAAATA TCTTCAAAGGCGATTGGCTCTGCATCAAACATTTTCACGAATTGACGATTTTTTTCTTCT AAGTTGATACGCAGACGTTCTTCAAAAATTTCTTTGTCTAAAAGATCAGCGATCCGAATG CCGACTCTGGCTGCTTTATCCATATAGGCTGGTCCGATCCCTTTGATTGTCGTACCGATC TTGTTGTCACCTTTGGCATCTTCTTGCAGCTGATCCAAATGGATATGGTAAGGTAAAATA ACATGTGCACGATCAGAGATCTTCAAGTTTTCTGTTATTATATTGTTTTCTTTCAAGTAT GCTAATTCTTTAACTAATGATTTCGGGTTCACAACGACCCCGTTTCCAATGACACTGATT TTATCTGCATAAAAGATCCCTGAAGGAATCAAATGCAGTTTATAGGTCACACCGTCAAAT TTAATCGTATGGCCGGCATTGTCTCCACCTTGATAACGTGCAATGACTTCCGCGTTTTCA CTCAAAAAGTCCGTAATCTTTCCTTTACCTTCATCGCCCCATTGTGTACCTACTACTACT ACAGATGACATATAATGACCTCTTTCTTTAATTAGTGCATTCCTTAAGTATTGTAACAAG ATTCGCAAGCTCTTTCAATCTAAAATCGAATAATCGTTTTAAATTCTCATTTTTCAGGGG TAAAAAACGAACTATTTTCTTTGGAATAATTATTTATACACGTAAAAACGAATAAAGTCG GCACATAAAGAAAGCCCTACTACCATCAGCGCGATGCAGACGGCAGCAGGAGCCATTGTT TTTCAAATAATTGGTGTCTTACCCGAACTCTTCTCGTGGCGAGACCGAGGAGAATTTATT GTATTCTTTGATGAATAGAAGTTCGACCGTCCCCCGGGCACCACTCCGGTTTTTTTCAAT AATGACTTCGATCACATTGTTGTTTTGTTGTTCTTCTGGTTCATCGTCATCGTCGCCTTC ACTGCGGTAGTAGTCATCCCGATACAAGAAAGCAACGATATCGGCATCCTGCTCGATCGA CCCTGATTCCCGGATATCACTTAAAACAGGACGTTTGTCTTGTCGCTGTTCCACACCCCG AGAAAGCTGAGACAGTGCAATCACCGGCACTTTCAATTCCTTCGCCAGTTTCTTTAATTG GCGAGAGATCTCAGAGACTTCTTGTTGGCGGTTTTCGCGACCCGTTCCTTCAATCAACTG CAAATAGTCGATCAAAATCAAGCCGAGATTGCCTTTTTCTTGCGCGAGTTTCCGACAACG TGCCCGGATCTCAGAGATCTTGATCCCGGGGGTATCATCGATATAGATATTGGCGTTAGA AAGACTGCCCATGGCAACGATCAAATTCCGCCACTCTTCTTCTGAGAGCTGCCCCGTCCG CAAGTGACTGGCCTCAATCGAGCCTTCCGCACAAAGCATCCGGTTGACCAATGATTCAGC CCCCATTTCCAGACTAAAGATCGCCACGGAACGATCGGTTTTCGTTCCGACATTTTGTGC GATATTCAAGGCAAATGCGGTTTTCCCTACCGCGGGGCGGGCAGCCAGAATAATCAGCTC TTCTTTTTGCAGCCCCGCCGTCATTTTGTCTAAAGCCGCATAACCCGTAGGTAATCCGGT GATTTCTTCATTGTTTTGCGCCAATTGATCGATCGTTTCGATCGTCCGATTCAAGACTTC CGCTATCGATTGGAAGCCATTACTGTTGCGCTTTTCGGATACTTCTAAAATACTTTTTTC TGCTTGATCAATGATCGACTGCACATCTTCATCTTGTTCAAAGCCTTTGGTTACGATACG GCTCGCTGTTTGGATTAGATTGCGCAGCGTGGCTTTGTCGTCAACGATCTTCGCATAATA AGCAATACTTGCTGCTGATGGTGAAGCTTGACTCAGTTCAGTCAGATACGTCAGACCGCC AACATCTTCAAGACTGTTGCTTTTTTCAATTTCTGCTTTCAACGTGATCAAGTCGATCGA TTCACTCCGGTCGTTCAACTGGATCATTGCTTGAAAAATTATTTGATGGCTGCGGCGATA AAAATCTTCTGGGGCGATTACTTCCATTGCATCGATGATCGCATCGGCATCTAAAAAGAC TGCCCCTAGGACCGCTTGTTCCGCTTCAATATCTTGTGGGGGAACTTGATTTTGCCAAAC TTCATTCATGCCATTCGCTCCTTCGTCCATTCATTCTACAAGATTCCCATCCAAAGTACA AGATTGCTTGGACGTTTGCCGAAAAAAACCCCAACATGTGACTGTTGGGAGTAATGCTTA TTCTTGAATGGTATGAACATTGATCGTTGCTGTTACTTGTGGGTGCAATTTTACAGGTAC TTGCGTAAACCCTAATGCACGAATCGGCTGATCCAATTCGATTTTGCGTTTGTCGATCTT AATTTTGTATTGCTTGTTCAAGGCATCGGCAATTTGTTTTGATGGGATCGAACCGAACAA GCGGCCATCTTCCCCTGCTTTGGCATTGATCTTCACGACGGTTTCTTCTTTTTCAAGAAG TGCTTTTAACTCTTTCGCTTCTGCTAAGACTTCCGCATCTTGTTTTTCTTTGGCTTTTTG TTTGCCTTTTAATTCTGCCATGCTTTCATTGTTGGCAGGTTTGGCTAAGTTGTTTTTGAT CAGGAAGTTTTGTGCGTAGCCATTAGGGACTTCCTTGATATCGCCTTTTTTGCCTTTGCC TTTGACATCTTGTAAGAAAATAACTTTCATCTTGGTCACTCCTTGTTATTGTTCATTTTT CGTTAATTCCGCTCGCAACTGGTTTTCTACATCGCCAATGCTGCTGTTCTTTATTTGCGT GGCTGCGTTGGTAAAATGTCCGCCGCCGCCTAATGCCTCCATCAAGGTTTGTACATTGAC TTTTCCGGTACTTCTAGCACTGATACCGATCAAATCTCCTGGCTGTTTCGTAATGACAAA CGCGGCATGGATCCCATTGATCGATAGCAGAGTATCGGCCGCTTTTGCAACGGTGACACT ATCGTACACCCGATCTTCATCCGCTGCAGCAATCACGATATCTTCTCGGAAATGCTGGCT GCGAGAAACCAGTTCACTGATCATCAAATAGGAATCTAAATCCGTACTCAACATGTATTG AACCAATGACGTATCTGCGCCTTGATTTTTCAAATAGCCAGCAATATCAAAGGTCCGACC AGTGGTTCGCACCGTGAAGTTCTTCGTATCCACGTAGATTCCCGCTAATAAAGAAGTCGT AATAAATTTAGGGACTTGCGATCTGCGAGAAGCGCGATACTGGATCAATTCTGCTACCAG TTCCGATGCTGAAGACGCGGAAGATTCAATATACGTCAATAATGGCTTATCGGGAAACTC ATCCCCGCGACGATGGTGATCGATCACTGCGATTTTGTCAAATTCATCATAGACCGCTTG CGAGATCGACATCGACGGCTTATGGTAATCTACCATCACTAAGACACTTTCTTCATTTGA TAAATTGACTGCTTCTTCCCCAGTGATCACAAATCGTTCCAGCTCGGGGTATTTTTTCAA TTCTTCCAATGCCCGCTGAATGTCGGCGGTGATCTCTTTCGGATTTAAAATGATGTAGCA TTCTTTGTCGCTCATCATCGCCATGTAAGCCACCCCAAAAGCCGAACCTAAAGCATCCAT GTCCGGGTAACGATGACCCATGATAAAGATCCGCTGGTTTTCAGCAAAAATCTTTCTCAA CGCCGTACTCATGGCACGAGAACGAACACGCGTTCTCTTCGGCGTACCATCCGTATTACC GCCAAAGAATTGCGGTTTTGCTTCTTCTTTGGCTTCTTTTAAAACGACTTGATCGCCGCC ACGAACTAACGCAATGTCGAGATTGTTTTGTGCCACTTCACCAATCTCTTCAAAAGACTC TTCCCCATAGGAGATTCCCATACTGATCGTTAATGCCAGATCATTTTTTTCCGCAACTTG CCGTACTCTAGTCAAAAATTGGAATTTTTCTTCCTTCATCCGCTCAATATCTGAATACTT CGCGACGAAAAGAAACCGCTCGGAATTGATTCGTTTGTAAAAAACATGATTCTCACTTGC CCAATCAGAAATCAGTGTCGTGATCAGCGAGTTCAAATAAGAAACTTGTTTGTCGTCTTT TTTCTCAATCAAATCATCGTAATTATCAATTGAAATCAACCCAATTGCTGCCATCTTTTT TACCCCTCAATGTATCATCCCATTTTTTTGAAGCTTTGTTCCTTATTTTACCACAAAACA ATCAAATAGGCGATTGATGCAAAAAGTTCCACGTGAAACTTTTTTGGTGAGATAATCATG GAAAAATTTCTGTCACTCGTCATTTTATCTGTATATAAAATAACAAGTATTTCTTCAGTA GATAAAAAAATTGACAAGCTTCAAAAGAAACTTGTCAATGAAAATCATTCGATTTATTCT TCGCCTACGAATGGAAGTAATCCCATAATACGCGCACGTTTGATTGCAATGGTAAGTTTG CGTTGGTTTTTCGCACCAGTACCAGTTACACGACGTGGTAAAATTTTACCGCGTTCTGAA ATGAAACGTTTTAGTAATTCAATATCTTTATAATCGATATGTTCAATATGGTTTGCAGCA ATGTAGTCTACTTTACGACGTTTGCGTCCGCCTCTTCTTTGTTGTGCCATCCTATTTCCC TCCTATCAATTTCTTAGAATGGTAAATCATCGTCTGAAATGTCGATTGATGAGTTTCCGA ATGGATCGGAGTTGTCTCGATCAAAATTAGGCATTCCTGATGGTTGAGAGGATTGAGTTT GATTTGAGTTATTGTTACCAAATCCAGAAGAACTATTTGAGTTATACGTATTGCTGCTGC CAGATCCGCTATCAGTTGTGCGTCTTTGCTCGGAAGCATTTCGCGATTCTAATAATTGGA AGTTGTCAGCAACGACTTCTGTTACATAAACACGTTGGCCTTGTTGGTTGTCGTATGAAC GGGTTTGAATACGTCCAGTAACCCCTAATAAAGTTCCTTTGCGTGCATAGTTTGCTAATG TTTCCGCTGGTTTTCTCCAAATAACACAGTTGATGAAATCAGCTTCGCGCTCTCCACTTT GGTTGGTAAAATTGCGATTTACCGCCAAGGTAAAGGTTGCGACACCAGTGCCATTAGAAG TGTAACGTAAATCAGGATCTTTGGTTAGTCTTCCTACTAGTACAACATTATTAATCAA
Region Details
| Region | 1 |
| Region Length | 8.6Kb |
| Completeness(score) | incomplete(10) |
| Specific Keyword | NA |
| Region Position | 497874-506571 |
| # tRNA | 0 |
| # Total Proteins | 8 |
| # Phage Hit Proteins | 6 |
| # Hypothetical Proteins | 0 |
| Phage + Hypothetical Protein % | 75% |
| # Bacterial Proteins | 2 |
| Attachment Site | no |
| # Phage Species | 5 |
| Most Common Phage Name(hit genes count) | PHAGE_Bacill_G_NC_023719(2) PHAGE_Mycoba_ScottMcG_NC_011269(1) PHAGE_Mycoba_Catera_NC_008207(1) PHAGE_Entero_P1_NC_005856(1) PHAGE_Strept_phiARI0746_NC_031907(1) PHAGE_Strept_MM1_NC_003050(1) PHAGE_Escher_RCS47_NC_042128(1) PHAGE_Staphy_SPbeta_like_NC_029119(1) PHAGE_Strept_phiARI0468_4_NC_031915(1) PHAGE_Strept_315.1_NC_004584(1) PHAGE_Mycoba_ET08_NC_013650(1) PHAGE_Plankt_PaV_LD_NC_016564(1) PHAGE_Strept_phiBHN167_NC_022791(1) PHAGE_Mycoba_Nappy_NC_023725(1) PHAGE_Salmon_SJ46_NC_031129(1) PHAGE_Mycoba_Cali_NC_011271(1) |
| First Most Common Phage # | 2 |
| First Most Common Phage % | 25% |
| GC % | 43.15% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NZ_AKKS01000002.1| Enterococcus sp. C1 contig2, whole genome shotgun sequence. 543819, gc%: 44.19%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 8 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 497874..499496 | PHAGE_Bacill_G_NC_023719: gp245; YS9_RS02380; phage(gi593777701) | 8.03e-17 | Showinfo_outline |
| 2 | complement(499596..500471) | PHAGE_Staphy_SPbeta_like_NC_029119: DegV domain-containing protein; YS9_RS02385; phage(gi985761237) | 2.47e-15 | Showinfo_outline |
| 3 | complement(500612..501904) | PHAGE_Mycoba_Cali_NC_011271: gp254; YS9_RS02390; phage(gi204305879) | 1.43e-25 | Showinfo_outline |
| 4 | complement(502152..503522) | PHAGE_Strept_315.1_NC_004584: putative DNA polymerase III delta prime subunit; YS9_RS02395; phage(gi28876155) | 5.55e-179 | Showinfo_outline |
| 5 | complement(503631..504083) | 50S ribosomal protein L9; YS9_RS02400 | 0.0 | Showinfo_outline |
| 6 | complement(504099..505547) | PHAGE_Bacill_G_NC_023719: gp260; YS9_RS02405; phage(gi593777716) | 2.94e-08 | Showinfo_outline |
| 7 | complement(505787..506023) | 30S ribosomal protein S18; YS9_RS02410 | 0.0 | Showinfo_outline |
| 8 | complement(506047..506571) | PHAGE_Strept_phiARI0468_4_NC_031915: DNA polymerase; YS9_RS02415; phage(gi100036) | 9.45e-68 | Showinfo_outline |
Sequence
>497874..499496
EnterococcusspC1MITVSDVSLHFSDRKLFDDVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIQPSTGNVSLGPDERMAVLKQNHYDYEEFPVIETVIMGHKRLYEVMKEKDAIYMKEDFSDEDGIRAAELEGEFAELDGWEAEPEAAVLLQGLNIPDELHHVLMKDLTAGQRVKVLLAQALFGKPDVLLLDEPTNGLDIQSINWLEEFLINFDNTVIVVSHDRHFLNKVCTHMADLDFGKIKLFVGNYDFWLESSQLAAKLQSQSNAKKEEQIKELQDFIARFSANASKSKQATSRKKMLDKITLDDIQPSSRRYPFVGFKPEREIGNDLLQVDNVSVTIDGKKILDNISFTLNKDDKVAFVANSDITTTTLFKVIMGEITPDTGSVRWGVTTQHAYLPKDTTSEFDTDTPIVDWLRQYASKEEDDNTFLRSFLGRMLFSGDEVLKPVNVLSGGEKVRCMLSKMMLSKANVLVLDDPTNHLDLESITALNDGLMAFTGSLLFASHDHQFIQTLANRIIAVSSKGVVDRAETTYDEFLENKDVQKRVAEMNQ
Sequence
>complement(499596..500471)
EnterococcusspC1MFQIMTDSCCDLPAARLAELDVAYIPMLIELDGKEYIDDMGKEFDTEWFLGKLKEHAQPTTSQINVGRYMEYFRPYVEAGTPVLYLGFSSGMSGSFQSAVQAVALLKEEYKEVAITLIDTRSASLGEGFLVAEAAQQKAQGRSLLEVSQWVEENKLRLDSWVTVDDLKQLERGGRISKTAAAIGGLLNVKPIITVDTAGKLRSVDRVRGRNKAIQKIVDQTIANLHESKTNTVYFANAGDAEAAEKLIKRLTEKVPDIIIHHYPLGPTISSHTGYGCLALFSFGKARLEQA
Sequence
>complement(500612..501904)
EnterococcusspC1MSSVVVVGTQWGDEGKGKITDFLSENAEVIARYQGGDNAGHTIKFDGVTYKLHLIPSGIFYADKISVIGNGVVVNPKSLVKELAYLKENNIITENLKISDRAHVILPYHIHLDQLQEDAKGDNKIGTTIKGIGPAYMDKAARVGIRIADLLDKEIFEERLRINLEEKNRQFVKMFDAEPIAFEDIFEEYYEYGQQIKKYVTDTSVILNDALDEGKRVLFEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKINKVVGVCKAYTSRVGDGPFPTELFDETGEQIRKIGREYGTTTGRPRRVGWFDTVVMRHSKRVSGITNLSLNSIDVLSGLETVKICTAYELDGELIYHYPASLKELNRCKPVYEELPGWSEDITGCKTLADLPENARNYVHRISELVGVRISTFSVGPDRSQTNILESVWAQI
Sequence
>complement(502152..503522)
EnterococcusspC1MNEVWQNQVPPQDIEAEQAVLGAVFLDADAIIDAMEVIAPEDFYRRSHQIIFQAMIQLNDRSESIDLITLKAEIEKSNSLEDVGGLTYLTELSQASPSAASIAYYAKIVDDKATLRNLIQTASRIVTKGFEQDEDVQSIIDQAEKSILEVSEKRNSNGFQSIAEVLNRTIETIDQLAQNNEEITGLPTGYAALDKMTAGLQKEELIILAARPAVGKTAFALNIAQNVGTKTDRSVAIFSLEMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWRNLIVAMGSLSNANIYIDDTPGIKISEIRARCRKLAQEKGNLGLILIDYLQLIEGTGRENRQQEVSEISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRSEGDDDDEPEEQQNNNVIEVIIEKNRSGARGTVELLFIKEYNKFSSVSPREEFG
Sequence
>complement(503631..504083)
EnterococcusspC1MKVIFLQDVKGKGKKGDIKEVPNGYAQNFLIKNNLAKPANNESMAELKGKQKAKEKQDAEVLAEAKELKALLEKEETVVKINAKAGEDGRLFGSIPSKQIADALNKQYKIKIDKRKIELDQPIRALGFTQVPVKLHPQVTATINVHTIQE
Sequence
>complement(504099..505547)
EnterococcusspC1MAAIGLISIDNYDDLIEKKDDKQVSYLNSLITTLISDWASENHVFYKRINSERFLFVAKYSDIERMKEEKFQFLTRVRQVAEKNDLALTISMGISYGEESFEEIGEVAQNNLDIALVRGGDQVVLKEAKEEAKPQFFGGNTDGTPKRTRVRSRAMSTALRKIFAENQRIFIMGHRYPDMDALGSAFGVAYMAMMSDKECYIILNPKEITADIQRALEELKKYPELERFVITGEEAVNLSNEESVLVMVDYHKPSMSISQAVYDEFDKIAVIDHHRRGDEFPDKPLLTYIESSASSASELVAELIQYRASRRSQVPKFITTSLLAGIYVDTKNFTVRTTGRTFDIAGYLKNQGADTSLVQYMLSTDLDSYLMISELVSRSQHFREDIVIAAADEDRVYDSVTVAKAADTLLSINGIHAAFVITKQPGDLIGISARSTGKVNVQTLMEALGGGGHFTNAATQIKNSSIGDVENQLRAELTKNEQ
Sequence
>complement(505787..506023)
EnterococcusspC1MAQQRRGGRKRRKVDYIAANHIEHIDYKDIELLKRFISERGKILPRRVTGTGAKNQRKLTIAIKRARIMGLLPFVGEE
Sequence
>complement(506047..506571)
EnterococcusspC1MINNVVLVGRLTKDPDLRYTSNGTGVATFTLAVNRNFTNQSGEREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTRSYDNQQGQRVYVTEVVADNFQLLESRNASEQRRTTDSGSGSSNTYNSNSSSGFGNNNSNQTQSSQPSGMPNFDRDNSDPFGNSSIDISDDDLPF
Enterococcus sp. C1 contig2, whole genome shotgun sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 543819 bps
Phages: 1
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Click on a region in the genome above to show details here.
Click on a region in the genome above to show details here.
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Locus 1: YS9_RS02380 (Region 1)
Locus: YS9_RS02380ORF Start: 497874
ORF Stop: 499496
Strand: Forward
Protein Sequence: MITVSDVSLHFSDRKLFDDVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIQPSTGNVSLGPDERMAVLKQNHYDYEEFPVIETVIMGHKRLYEVMKEKDAIYMKEDFSDEDGIRAAELEGEFAELDGWEAEPEAAVLLQGLNIPDELHHVLMKDLTAGQRVKVLLAQALFGKPDVLLLDEPTNGLDIQSINWLEEFLINFDNTVIVVSHDRHFLNKVCTHMADLDFGKIKLFVGNYDFWLESSQLAAKLQSQSNAKKEEQIKELQDFIARFSANASKSKQATSRKKMLDKITLDDIQPSSRRYPFVGFKPEREIGNDLLQVDNVSVTIDGKKILDNISFTLNKDDKVAFVANSDITTTTLFKVIMGEITPDTGSVRWGVTTQHAYLPKDTTSEFDTDTPIVDWLRQYASKEEDDNTFLRSFLGRMLFSGDEVLKPVNVLSGGEKVRCMLSKMMLSKANVLVLDDPTNHLDLESITALNDGLMAFTGSLLFASHDHQFIQTLANRIIAVSSKGVVDRAETTYDEFLENKDVQKRVAEMNQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: YS9_RS02380, gp245, phage(gi593777701), PHAGE_Bacill_G_NC_023719
Homolog/Ortholog E-Value: 8.03e-17
Locus 2: YS9_RS02385 (Region 1)
Locus: YS9_RS02385ORF Start: 499596
ORF Stop: 500471
Strand: Backward
Protein Sequence: MFQIMTDSCCDLPAARLAELDVAYIPMLIELDGKEYIDDMGKEFDTEWFLGKLKEHAQPTTSQINVGRYMEYFRPYVEAGTPVLYLGFSSGMSGSFQSAVQAVALLKEEYKEVAITLIDTRSASLGEGFLVAEAAQQKAQGRSLLEVSQWVEENKLRLDSWVTVDDLKQLERGGRISKTAAAIGGLLNVKPIITVDTAGKLRSVDRVRGRNKAIQKIVDQTIANLHESKTNTVYFANAGDAEAAEKLIKRLTEKVPDIIIHHYPLGPTISSHTGYGCLALFSFGKARLEQA
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: YS9_RS02385, DegV domain-containing protein, phage(gi985761237), PHAGE_Staphy_SPbeta_like_NC_029119
Homolog/Ortholog E-Value: 2.47e-15
Locus 3: YS9_RS02390 (Region 1)
Locus: YS9_RS02390ORF Start: 500612
ORF Stop: 501904
Strand: Backward
Protein Sequence: MSSVVVVGTQWGDEGKGKITDFLSENAEVIARYQGGDNAGHTIKFDGVTYKLHLIPSGIFYADKISVIGNGVVVNPKSLVKELAYLKENNIITENLKISDRAHVILPYHIHLDQLQEDAKGDNKIGTTIKGIGPAYMDKAARVGIRIADLLDKEIFEERLRINLEEKNRQFVKMFDAEPIAFEDIFEEYYEYGQQIKKYVTDTSVILNDALDEGKRVLFEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKINKVVGVCKAYTSRVGDGPFPTELFDETGEQIRKIGREYGTTTGRPRRVGWFDTVVMRHSKRVSGITNLSLNSIDVLSGLETVKICTAYELDGELIYHYPASLKELNRCKPVYEELPGWSEDITGCKTLADLPENARNYVHRISELVGVRISTFSVGPDRSQTNILESVWAQI
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: YS9_RS02390, gp254, phage(gi204305879), PHAGE_Mycoba_Cali_NC_011271
Homolog/Ortholog E-Value: 1.43e-25
Locus 4: YS9_RS02395 (Region 1)
Locus: YS9_RS02395ORF Start: 502152
ORF Stop: 503522
Strand: Backward
Protein Sequence: MNEVWQNQVPPQDIEAEQAVLGAVFLDADAIIDAMEVIAPEDFYRRSHQIIFQAMIQLNDRSESIDLITLKAEIEKSNSLEDVGGLTYLTELSQASPSAASIAYYAKIVDDKATLRNLIQTASRIVTKGFEQDEDVQSIIDQAEKSILEVSEKRNSNGFQSIAEVLNRTIETIDQLAQNNEEITGLPTGYAALDKMTAGLQKEELIILAARPAVGKTAFALNIAQNVGTKTDRSVAIFSLEMGAESLVNRMLCAEGSIEASHLRTGQLSEEEWRNLIVAMGSLSNANIYIDDTPGIKISEIRARCRKLAQEKGNLGLILIDYLQLIEGTGRENRQQEVSEISRQLKKLAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRSEGDDDDEPEEQQNNNVIEVIIEKNRSGARGTVELLFIKEYNKFSSVSPREEFG
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: YS9_RS02395, putative DNA polymerase III delta prime subunit, phage(gi28876155), PHAGE_Strept_315.1_NC_004584
Homolog/Ortholog E-Value: 5.55e-179
Locus 5: YS9_RS02400 (Region 1)
Locus: YS9_RS02400ORF Start: 503631
ORF Stop: 504083
Strand: Backward
Protein Sequence: MKVIFLQDVKGKGKKGDIKEVPNGYAQNFLIKNNLAKPANNESMAELKGKQKAKEKQDAEVLAEAKELKALLEKEETVVKINAKAGEDGRLFGSIPSKQIADALNKQYKIKIDKRKIELDQPIRALGFTQVPVKLHPQVTATINVHTIQE
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: YS9_RS02400, 50S ribosomal protein L9
Homolog/Ortholog E-Value: N/A
Locus 6: YS9_RS02405 (Region 1)
Locus: YS9_RS02405ORF Start: 504099
ORF Stop: 505547
Strand: Backward
Protein Sequence: MAAIGLISIDNYDDLIEKKDDKQVSYLNSLITTLISDWASENHVFYKRINSERFLFVAKYSDIERMKEEKFQFLTRVRQVAEKNDLALTISMGISYGEESFEEIGEVAQNNLDIALVRGGDQVVLKEAKEEAKPQFFGGNTDGTPKRTRVRSRAMSTALRKIFAENQRIFIMGHRYPDMDALGSAFGVAYMAMMSDKECYIILNPKEITADIQRALEELKKYPELERFVITGEEAVNLSNEESVLVMVDYHKPSMSISQAVYDEFDKIAVIDHHRRGDEFPDKPLLTYIESSASSASELVAELIQYRASRRSQVPKFITTSLLAGIYVDTKNFTVRTTGRTFDIAGYLKNQGADTSLVQYMLSTDLDSYLMISELVSRSQHFREDIVIAAADEDRVYDSVTVAKAADTLLSINGIHAAFVITKQPGDLIGISARSTGKVNVQTLMEALGGGGHFTNAATQIKNSSIGDVENQLRAELTKNEQ
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: YS9_RS02405, gp260, phage(gi593777716), PHAGE_Bacill_G_NC_023719
Homolog/Ortholog E-Value: 2.94e-08
Locus 7: YS9_RS02410 (Region 1)
Locus: YS9_RS02410ORF Start: 505787
ORF Stop: 506023
Strand: Backward
Protein Sequence: MAQQRRGGRKRRKVDYIAANHIEHIDYKDIELLKRFISERGKILPRRVTGTGAKNQRKLTIAIKRARIMGLLPFVGEE
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: YS9_RS02410, 30S ribosomal protein S18
Homolog/Ortholog E-Value: N/A
Locus 8: YS9_RS02415 (Region 1)
Locus: YS9_RS02415ORF Start: 506047
ORF Stop: 506571
Strand: Backward
Protein Sequence: MINNVVLVGRLTKDPDLRYTSNGTGVATFTLAVNRNFTNQSGEREADFINCVIWRKPAETLANYARKGTLLGVTGRIQTRSYDNQQGQRVYVTEVVADNFQLLESRNASEQRRTTDSGSGSSNTYNSNSSSGFGNNNSNQTQSSQPSGMPNFDRDNSDPFGNSSIDISDDDLPF
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: YS9_RS02415, DNA polymerase, phage(gi100036), PHAGE_Strept_phiARI0468_4_NC_031915
Homolog/Ortholog E-Value: 9.45e-68
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download