Submission Results
Sequence Name: Not Available
GenBank Accession Number: 521232454 open_in_new
GenInfo (GI) Number: 0000000000 open_in_new
Download Results: 521232454.PHASTER.zip
gi|00000000|ref|NC_021667.1| Klebsiella pneumoniae plasmid IncA/C-LS6, complete sequence. 171925, gc%: 52.29%
Download summary as .txt file: summary.txt file_download
Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 20.7Kb | incomplete | 50 | 9 | 135084-155810 info_outline | PHAGE_Staphy_SPbeta_like_NC_029119(2) | 53.21% | Show info_outline |
Region DNA
>1 135084-155810 AAACCCCTGCTTTACTTCCCAAGTCTTCTTACTCATGGTGAATACCATCAGTAAGCAGATTTTGTTCTCT TCGGAGAGCGAAAAGTGCGATAGCTGGTCGCCAAAAACAAACAGCAAATTAACGTTAATTTATTAATCCC TGCGGGAGTCTATCTCCTGCTGGAGATACCTCCCGTTATTTCTGGAGGTATCCATGAACAAATTCCAAGA CTTTAAGTTGGTTTATCGTCAAGGTGGTCGTCGCTTAGAGCGTGTCTTTACGGACACTCTTTACGCGAAT GTGAAGCGTGTCGCTGACTCGTTTCCTCCGACCGTTCTTTGGCGCATTCAGCCAGCGTAAAACTCGGAAC CTTAAAGCTCGGCTTTGGCCGTGACCTTTCAATAACCCATGCGGGTACACTTCCCCGCACGGGGTAGGTG TACCCATTAACTTTGGAGTACACCTTATGAACCAAGTAGCTAAATTGGACCTCGCCCAAATCCGTCAACA AGCCATCAATGATGGTCTGCTGGTGGACCAATCTTCCATCGGTAAACAAGCTGGTTTCCTGACCAATGTG GCAGTGACCCCGGCAATTGTCGATGGAGTATTTGGTGCAGATGGTAAGCACTCGGTAGAAGACTTCCTTT TCATGTTTTTGCAGCTTTGTGTTGCTCAAACAAAGGTCGCTTTTACCGACAACAAGAATTGGGGAAAGAT TCGTCTTTATTACCCCATGCCCACTGTAGATGGCTTTTTCAAACCCACTGAGGTTGTGATTAAGTCAGAT CCTGTAACCGCAGATGTCACAATCATGATGGCCTCGGAAGAGGGCGCTCATTTGTGCTTGTGATATTCAC AAAATTCGCCTCCGTTTCGGGGGCGACCTTTTTAAACCCCTCGCCGGGGAGAACTCCCCGGCTGGGGAGC CTCCTTGGCACATTCTCCCGGTGTCGGGGTTTCCTTAAAACCCTGGCGACGGGGGTTTAAGGAAGCCTCG ATGCTGGGGTTCACGCTAAGGAGAAAACCTATGTCTTACTACAAAGCTGACACCGTTCGTGAAGCTGCAA ACGGAAACTGGCTATTCATCCTGGCGGCCCTAGCGCCCCATCTTGAACCAGCTCTCCGTAAACCTGGTCG TCATGTTTCTTGTCCTATCCACGGCGGGAAAGATGGCTTCCGACTGTTCAAGGATGCCCACCTGACTGGT GGCGGCGTATGCAATACATGCGGTGCCAATCATGATGGTTTTGAGCTGCTGATGTGGCTCAATAACTGGG ACTTTAAACAGTGCCTGAGCGAGGTTGGTGATTATCTGGGCGTTGAGAAAGAGCAACCCCAGTATCAACA AGCCGCTGCACCGACACGAGCTCCTGTCCAGGCCAAAGCGCCTGTTCAGCAAGAGCCTATGAAGGTGAAT AACAAGGTTCTCGATTCCAAGAATCGTAAAAAATCCATTGCCGGTACTCTGATTGCCCACGGTAAAGCTC CTTATGAGCATAACGAAGACAACGAGCTCAGCTACTTTGCCTTCATCCGTGACAAGAGCGGTTTGGAACG CACCATCTGGGGCGTGGATCTTGAAAGAGCCATTGGTGAAAGTGAAGCCAAGTATGGGGATGAGATCGTC ATGACAAACCTCGGGCGCGAGCCTGTAACTGTCGTCGTTGAAGTTAAGGACGAGCAGGGGAATGTTGTGA GAGAACAACCTATGCAAACGCATCGCAACACCTGGCTGGTGGAACGTCGCGGCGCTACGGTAACGCAGTT CCGCGCTCGCTCGAACGGTGGTGTTGAGCCGGTGAGTCACCATGTTGAGTCGGCCCCTGTGGTCAACCGC AAGGTAGAAACTCCGGCACCGCAAGTACAACCTGCGGCCACACAACCGGAAGAGCAAAGCAGCGAAAATA AGCCGAAAGTTGTTCCGATGTTTCGTGAACAACCTAAGCCTTGGTTGCTTGAGCTCCAAGAAGAAATGGA GAAGAGAATGGAGCGCGAACGCGCTTACAGTGCTCGTCTCCGTGAGAAAATCGAGAAGGTATGGAACGAG TGTTTGCCGTTCTCCAGTCATGTGACTGAGCCAATGCGTCTGTACTTCAAAAACCGCGAGCTGCTGTTCA AAGTTGATGAAGTAGAAAAAACAGACTGTCTGCGGTTCAATCCGGCTATGGCCTACTACGACGAAGATGG CAATGAAGTTGGGAAATTCCCGGCTATCGTCTGCGCTATCCGAGATGTGGAAGGCAACCTGGTAACGCTC CACCGCACCTATCTCACCCAAAACGGTAAAAAAGCCAAGGTCGGCAACGCCAAAAAGATGATGCCCATTC CTGACGGTTTGGATGTCAATGGCGCGGCCATCCGCCTCGGTGAACCGACTGAGGGTATCCTGGGTGTTGC AGAAGGGCTGGAAACAGCTCTGTCAGCTTATCGAGTCACTCAAATCCCGGTTTGGTCAACGGTCAATGCC ACCCTAATGGAGTCCTTCGAGGTTCCAGAAGGTGTTCACACCGTACTGATCTGGGCTGACAAAGATAAGT CTGTGACTGGGGAGAAGTCAGCGAACGTGCTGAAAGCCAAGCTGGAGAAGCGCGGCATTCGTGTGTACGT CCTGCTGCCTAAGCTCCCGATCCCGCCCAGAGCGAAAGGGATTGACTGGAACGATGTCCTGATGAGTCAG GGAAGCCTCGGTTTCCCGAATGCTCGCTACCTGCGCGATTTCATTGCGAGAAGGAGAGCTGAGTATGGCC GTCATTGATGTCTCGAAGGTTGATACAACGCCTGGTAACGACGCGGTGTGCCCCTTCTCTCCCCCTGAGG GGTGGGAGGGGGACTCTGCGGCCTACGTTGAGCTTATGCGGTCTCGGTATCGTCATCTGATGCACGGCCA GAGAATGATGGTGACAGCCTCCTTCGCAAGAAGGGAGCCTATCCAAGTTACTGGCCCGTTTGCTGATGAA GCGACGAAGATCATTAACTCAATGAAGATGAACAAGGCGAAGCCAACAGCTTTGTCTGCCTAAAACTTTA ACCCTGAGGGGGTGTTCATGCCCTCTCAGGCATGATTCGCCTCCTCTTCAACTATGGAGGTAATCATGAA AAAGTTTTTGCGTATTAAGACGTGGTTTGTGCGTCTTTTCTCTCCTGACAAGAAGACTCTGGGAGCTATC GGTGAAGACCTGCGTAAGGTCGCCGTAACAGCCATCGGTGTCGGTATTGTAGGGGTCGTCTCAGAAAACG GAATCTATGGTCACTCCCGTTTTTGCAACACCGATTTTGACGACAAGTTGGCTTGCTTGAATCTATCCGG CGTCTGAATGGGATTTTATTCCCGCGCCTTGATGAGTTCCGCGCCTGATGAACCTCCAGAAAATATACGG CTTCAATGAGCCTTTCCGTTTTACAGGTTCCTCAACAGGCCGGTGGGCCGTTAGTATCATCAATATCAGT ATTCGCAAAACCAGATCAGTAATTCTTTAAACCGGTGTATTTCTGCCGTTATGCTACATAAGTTTGCTGT CGTGCCGTTAGGGCCCAGGCTATTCTGGCCAGCTTGTTTTCCAGAGCACAAGTGACGACAAAGTTGCTTT TCCGGCACAGTAAATCCCTGACCCAATCGGCCAATTTGCCAGACTGGTGTTCCAGTTTTTGTATGAATAC CCTGGCACATTGAACCAACAAAGTTCGGATCTTTTTATTACCTCGCTTACTAATTCCCAGCAATGTCGTC CTACCTCCCGTGCTGTACTGCCGAGGTACAAGCCCTGTTGCCGCCGCAAAGTCACGGCTGCTGGCGTACT GCTTCCCGTCGCCAATCTCAGTTGAAATAGTACTCGCTGTCAGTGTTCCGACGCAGGGAATGCTCAGCAA GCGCTGTCCAACCTCATCTTCGTCCAACTTTCGTTTCAACTGGGATTCCAAATCTTTAATCTGCTCAACA AGATAGTGATAATGCTGTTGTAATTTCAGCAATAACTGGCTGAGGTAAAGAGGCAAACTATTATCCTCAA GAATGGTACTCAGTCGGCTAATAACGGCAGCTCCTCGGGGAACGCTAATGCCAAATTCCAGCAGAAAAGC ATGCATTTGATTGGTTGTTTTTACCTTATCCTGAACCAGGGATTCACGGACACGATGCAGAGCCCGCATT GCCTGCTGAGATTCCGTTCTGGGCTGCACAAAACGCATAGACGGACGCGATGCAGCTTCACAAATAGCTT CGGCGTCGACAAAGTCGTTTTTATTGCTTTTAACGAACGGGCGGACAAATTGTGGTGATATCAGCTTTGG GGAATGCCCCAACTCTTCCAACTTGCGTGCCATAAAGTGAGAACCGCCACAGGCTTCCATTGCGATGGTT GTAGCGGGGCATGTCGCCAAAAATTCGATCAACTTTGGCCGGGTAAATTTTTTACGGTAAACAGCCTTCC CGCGACGATCCTGGCAATGAATATGGAAAGAGTTTTTACCCAGATCGATACCAATGAGCGCAATGTTTTC CATGATAGTTCTCCGAATGAAAGCCTGTCCTCAGCATAGTACCGGGAAGGAGGGAGTGACCATCTCATTA AATAAAGCACGCTAAGCCGGTGGCAGCGGTCGCAATGGCCTAAACTTCCCCGCACCGACCTTGGCGCTGC TGCGCCATAGGTAATCGCCGGTCAGGTTGATGTGCTCCCACCCCAGCGGCGACAGATATTGCAACAATGT GTCGTCCAGCGCCGTGCCGTTGCCACGCAAAGCACTGGTGGCACGCTCCAGATATACCGTGTTCCACAAC ACGATGGCCGCCGTCACCAGATTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCAAAACTGCGGTCGCGGA TTTCACCCAATCGGTAGAAGAAGACCGCCCTGGCCAGCGCGTTGCGCGCCTCGCCCTTATTCAGCCCCGC ATGGACGCGGCGGCGCAGCTCCACGCTTTGCAGCCAATCCAAAATGAACAGCGTGCGCTCGATGCGCCCC AGCTCGCGCAACGCCACGGCCAAGCCGTTCTGGCGCGGGTAGCTGCCGAGTTTGCGCAGCATCAGCGAAG CCGTTACCGTGCCTTGCTTGATGGAGGTGGCCAGCCGCAGAATTTCATCCCAATGGGCGCGTATTTGCTT GATGTTCAGCCTGTCGCTGCTAATCATCGGCTTGAGCGCGTCATAGGCGGCATCGCCCTTGGGGATGAAT AGCTTGGTTTCGCCCAAGTCACGGATACGCGGCGCGAAGCGAAATCCCAGCAAATGCATCAAGCCAAACA CGTGATCGGTGAAGCCTGCCGTGTCGGTGTAGTGTTCCTCGATGCGCAAGTCCGACTCGTGGTACAGCAG GCCATCAAGCACGTAAGTTGAATCACGAATGCCCACGTTGACCACCTTGGCACTGAAGGGCGCGTACTGG TCGGAGATATGGGTGTAGAAAGTCCGTCCTGGACTGCTTCCATACTTCGGGTTGATATGACCAGTGCTTT CTGCTTTGCTGCCGGTTCTGAAGTTCTGGCCGTCCGACGATGACGTGGTGCCGTCACCCCAGTTGCCGGC GAAGGGTTGCCGAAACTGCGCATTCACCAGCTCGGCCAGCGCCGTCGAATAGGTTTCATCGCGGATGTGC CAGGCTTGCAGCCAAGACAGCTTGGCGTAGGTGGTGCCAGGGCAGGACTCGGCCATTTTGGTCAGACCCA GGTTGATCGCGTCGGCCAGGATCGTCGTCAACAGCAAGGTTTTGTCCTTGGCCGTGTCGCTGGTCTTCAG GTGTGTGAAGTGGCGGGTGAAGCCCGTCCATTCATCGACCTCCATCAGCAACTCGGTGATTTTGAGGTGC GGCAGCAGCATAGCTGTCTGGTCGATCATGGCTTGCGCGGCGTCTGGTACTGCCGCGTCCAGCGGCGTGA TCTTCAGGCCTGACGCGGTGGTGATGATGGCATCCGGTAAGTCGTTGGCCGCAGCCATGCGGTTGACTGT GGCGAGTTGCGCCTCCAACAATTCCAACCGGTCATGCAGGTATTGGTCGCAGTCGGTGGCCACTGCCAGC GGCAATTCGCTGGCCAGCTTCAAAGTGGCGAACTTCTCGACCGGCACCAGGTATTCGTCGAAGTCCTTGA ACTGGCGAGAACCCTGCACCCAGACATCACCGGAGCGCAGCGCGTTCTTCAGCTCCGACAGGGCGCATAA CTCGTAGTAACGCCGGTCGATGCCGTCGTCGGTCAGAACCAGCTTTGCCCAGCGCGGCTTGATGAATGCG GTTGGCGCATCGGCGGGCACCTTGCGCGCGCTGTCGCTGTTCATGCCGCGCAGCATGTCGATGGCATCGA GCACACCCTTGGCGGCGGGCGCAGCCCGCAATTTGAGCACGCCCAGGAACTGCGGCGCGTAGCGGCGTAG CGTGGCATAGCTTTCACCGATGTGGTGCAGGAAATCAAAGTCGGCAGGCCGCGCCAATGTTTGCGCTTCG GTGACGCTGGCGGCGAAGGTGTCCCAGGGCATAACGGCCTCGATGGCGGCGAACGGATCGCTGCCGCTTT GCTTGGCCTCAATCAACGCTTGACCGATGCGCCCATACATCCGCACCTTGTCGTTGATCGCCTTGCCGGA AGCCTGGAACTGCTGCTGATGCTTGTTCTTGGCCGCGTTGAACAGCTTGCCGATGATGCGATCGTGAAGG TCGATGATTTCATCGGTGACGGTGGCCATGCCTTCGATGGCCAGCGCTACCAGCGTGGCATAGCGTCGTT GCACCTCGAACTTTGCCAGATCAGCAGGCGTCATCTGGCCACCTTCACGAGCGATTTTGAGCAGGCGGTT CTGGTGAACCTGCCGCTCGATGCCTGCGGGCAGATCAAGTGCTTGCCAGGATTTCAGGCGCTCAATATGT TCGAGCATGTGGCGAGAGTTCGGTTTGGCAGGCGACTGGCGCAGCCATGCCAGCCACGTCACTTTACTGC CGTCCTTGCGCTTGAGAAGTTCGTCCAGGCGCTGACGGTGGGGTGATAACAAAGAATCGGTCAGCGCCGC GTAAATGCGTCGGTTGGCACGGGTGATGGCCTCGGCGCTTGCGCGCTCGATGGCATTCATGGCGGGCAGG ATAATGCTCTGCCGCCGCAGATTCTCGACAAGTGCGCTCGCCAGCACGATGCCTTTGTCGGTCTGCAAGG CCAGCTCGGTCAATGTATGCACGGCTTGCCGATAGTGGCTCATGGTGAAGGGCTTGAACCCAAAAACCGT TTGCAGCTCGACCAAGTGCTCCCGCCGTGTCTGTTCGCGCTGGCCGTACTCGCTCCAACTTTCCACTGGC ATCTTGAGTTGCGCGGCCACCATGCGCAACAGGGGCGGAAACGGAGGCTCATCGACGCCCAAAAAGGTGC CAGGGAATCGCAAGTAGCAAAGCTGCACAGCGAAGCCCAATCGATTCGCGGCGCCGCGACGCTGACGGAT CACCGACAGGTCGGTTTCGTTGAACGTGTAGTGCCGTATCAGTTCGTCTTTGGCATCTGGCAGTGCCAGC AGGCTTTCGCGCTCGGTGGCGGACAGGATTGAGCGGCGTGGCATGGTCAGTCTTCCCGCAGGTACTGGTA CAAGGTTTCGCGGCTGATGCCGAAGTCACGGGCCACCAAGGTTTTTTGGTCGCCTGCCGCAACTCGCCGT TTCAACTCGGCAATTTGTTCGCTGTTCAGCGATTTCTTTCGTCCCCGGTAGGCACCGCGCTGCTTGGCCA GCACGATTCCCTCGCGCTGACGTTCGCGGATCAGGGCGCGCTCGAACTCAGCGAAGGCTCCCATGACCGA CAGCATCAGATTGGCCATCGGTGAGTCCTCGCCGGTGAACTTCAGCCCTTCTTTGACGAACTCCATGCGC ACGCCCCGTTGTGTCAGCCCTTGGACGATGCGGCGCAGGTCATCAAGGTTGCGTGCCAGCCTGTCCATGC TATGCACCACCACGGTGTCGCCCTCGCGGACGAAGGCCAGCAGCCTTTCCAGCTCGGGACGCTGGGTGTC CTTGCCAGAAGCCTTGTCGGTGAACACCCGCGCCACCTGAACACCCTCCAATTGCCGTTCCGGGTTCTGG TCGAAGCTGCTGACGCGGACATAGCCGATGCGTTGACCTTGCAAGATGCCTCCAAAGGCAAAAGTGTCAG GATGAAATCTATTACCTTTGACGGAATATGTCAATCAATAGGAAATTTAACTCTATTCTGACATCGTTTG CACATGGGGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTGCAC ATGAACCCATTCAAAGGCCGGCATTTTCAGCGTGACATCATTCTGTGGGCCGTACGCTGGTACTGCAAAT ACGGCATCAGTTACCGTGAGCTGCAGGAGATGCTGGCTGAACGCGGAGTGAATGTCGATCACTCCACGAT TTACCGCTGGGTTCAGCGTTATGCGCCTGAAATGGAAAAACGGCTGCGCTGGTACTGGCGTAACCCTTCC GATCTTTGCCCGTGGCACATGGATGAAACCTACGTGAAGGTCAATGGCCGCTGGGCGTATCTGTACCGGG CCGTCGACAGCCGGGGCCGCACTGTCGATTTTTATCTCTCCTCCCGTCGTAACAGCAAAGCTGCATACCG GTTTCTGGGTAAAATCCTCAACAACGTGAAGAAGTGGCAGATCCCGCGATTCATCAACACGGATAAAGCG CCCGCCTATGGTCGCGCGCTTGCTCTGCTCAAACGCGAAGGCCGGTGCCCGTCTGACGTTGAACACCGAC AGATTAAGTACCGGAACAACGTGATTGAATGCGATCATGGCAAACTGAAACGGATAATCGGCGCCACGCT GGGATTTAAATCCATGAAGACGGCTTACGCCACCATCAAAGGTATTGAGGTGATGCGTGCACTACGCAAA GGCCAGGCCTCAGCATTTTATTATGGTGATCCCCTGGGCGAAATGCGCCTGGTAAGCAGAGTTTTTGAAA TGTAAGGCCTTTGAATAAGACAAAAGGCTGCCTCATCGCTAACTTTGCAACAGTGCCACGAAAACGCCGC TGACCGAGGGCAAGGCGTGATCCTGTCGCCCGTCTGCGGGCATTTGTTTGTGTTTCATCGTAGCCCTGCC GACTGTTCAGAAAACGGTGGATTGATGGACAGTCGGTGTTTTTCCCTGTCTGTCGTTTTCAGAAGACGGC TGCACTGAACGTCAGAAGCCGACTGCACTATAGCAGCGGAGGGGTTGGATCCATCAGGCAACGACGGGCT GCTGCCGGCCATCAGCGGACGCAGGGAGGACTTTCCGCAACCGGCCGTTCGATGCGGCACCGATGGCCTT CGCGCAGGGGTAGTGAATCCGCCAGGATTGACTTGCGCTGCCCTACCTCTCACTAGTGAGGGGCGGCAGC GCATCAAGCGGTGAGCGCACTCCGGCACCGCCAACTTTCAGCACATGCGTGTAAATCATCGTCGTAGAGA CGTCGGAATGGCCGAGCAGATCCTGCACGGTTCGAATGTCGTAACCGCTGCGGAGCAAGGCCGTCGCGAA CGAGTGGCGGAGGGTGTGCGGTGTGGCGGGCTTCGTGATGCCTGCTTGTTCTACGGCACGTTTGAAGGCG CGCTGAAAGGTCTGGTCATACATGTGATGGCGACGCACGACACCGCTCCGTGGATCGGTCGAATGCGTGT GCTGCGCAAAAACCCAGAACCACGGCCAGGAATGCCCGGCGCGCGGATACTTCCGCTCAAGGGCGTCGGG AAGCGCAACGCCGCTGCGGCCCTCGGCCTGGTCCTTCAGCCACCATGCCCGTGCACGCGACAGCTGCTCG CGCAGGCTGGGTGCCAAGCTCTCGGGTAACATCAAGGCCCGATCCTTGGAGCCCTTGCCCTCCCGCACGA TGATCGTGCCGTGATCGAAATCCAGATCCTTGACCCGCAGTTGCAAACCCTCACTGATCCGCATGCCCGT TCCATACAGAAGCTGGGCGAACAAACGATGCTCGCCTTCCAGAAAACCGAGGATGCGAACCACTTCATCC GGGGTCAGCACCACCGGCAAGCGCCGCGACGGCCGAGGTCTTCCGATCTCCTGAAGCCAGGGCAGATCCG TGCACAGCACCTTGCCGTAGAAGAACAGCAAGGCCGCCAATGCCTGACGATGCGTGGAGACCGAAACCTT GCGCTCGTTCGCCAGCCAGGACAGAAATGCCTCGACTTCGCTGCTGCCCAAGGTTGCCGGGTGACGCACA CCGTGGAAACGGATGAAGGCACGAACCCAGTGGACATAAGCCTGTTCGGTTGGTAAGCTGTAATGCAAGT AGCGTATGCGCTCACGCAACTGGTCCAGAACCTTGACCGAACGCAGCGGTGGTAACGGCGCAGTGGCGGT TTTCATGGCTTGTTATGACTGTTTTTTTGTACAGTCTATGCCTCGGGCATCCAAGCAGCAAGCGCGTTAC GCCGTGGGTCGATGTTTGATGTTATGGAGCAGCAACGATGTTACGCAGCAGGGCAGTCGCCCTAAAACAA AGTTAACCCAGGATGAGAACCTTGAAAGTATCATTGATGGCTGCGAAAGCGAAAAACGGCGTGATTGGTT GCGGTCCAGACATACCCTGGTCCGCGAAAGGGGAGCAGCTACTTTTTAAAGCATTGACCTACAATCAGTG GCTTCTGGTGGGTCGCAAGACGTTTGAATCTATGGGCGCACTCCCCAATAGGAAATACGCGGTCGTTACC CGCTCAGGTTGGACATCAAATGATGACAATGTAGTTGTATTTCAGTCAATCGAAGAGGCCATGGACAGGC TAGCTGAATTCACCGGTCACGTTATAGTGTCTGGTGGCGGAGAAATTTACCGAGAAACATTACCCATGGC CTCTACGCTCCACTTATCGACGATCGACATCGAGCCAGAGGGGGATGTTTTCTTCCCGAGTATTCCAAAT ACCTTCGAAGTTGTTTTTGAGCAACACTTTACTTCAAACATTAACTATTGCTATCAAATTTGGAAAAAGG GTTAACAAAGCTATGCAATCGACGGCAAAAAGCTTCGTTCGCTTCGCGCACTACGCCTTTTCCGCGATTG ATAGCGACGTTATGCAGCCAAATCCCAACAATTAAGGGTCTTAAAATGGTAAAAGATTGGATTCCCATCT CTCATGATAATTACAAGCAGGTGCAAGGACCGTTCTATCATGGAACCAAAGCCAATTTGGCGATTGGTGA CTTGCTAACCACAGGGTTCATCTCTCATTTCGAGGACGGTCGTATTCTTAAGCACATCTACTTTTCAGCC TTGATGGAGCCAGCAGTTTGGGGAGCTGAACTTGCTATGTCACTGTCTGGCCTCGAGGGTCGCGGCTACA TATACATAGTTGAGCCAACAGGACCGTTCGAAGACGATCCGAATCTTACGAACAAAAAATTTCCCGGTAA TCCAACACAGTCCTATAGAACCTGCGAACCCTTGAGAATTGTTGGCGTTGTTGAAGACTGGGAGGGGCAT CCTGTTGAATTAATAAGGGGAATGTTGGATTCGTTAGAGGACTTAAAGCGCCGTGGTTTACACGTCATTG AAGACTAGTCCTTTGCATAACAAAGCCATCAAACCGGACGCCAGAGATTCCGCGCCTGTTGCGCATGGCT TCGCCATTTTATGCGCAATAGGCGCGCCACCCTGTCGCCGTTTATGGCGGCGTTGGGCGCACAATAAGGC TCCTCGCAGAGTTGCTTGAAAGTTGTTACGATTCAAATTCAATCATGAGATAGTCAGCAGATGAGCACTT CCAAGAACGCAGACAAGTAAGCCGCAGCAACCTTCATTTTTCGGTTGTTGCGGCGTTCTCATGAATCCTT TTGCTCTACGGGAGCGCCGCCAAATCCTTTGTTCAAGGAGATGGTTTCGTGCGCTCAAAAAACTTTAGTT GGCGGTACTCCCTTGCCGCCACGGTGTTGTTGTTATCACCGTTCGATTTATTGGCATCACTCGGCATGGA CATGTACTTGCCAGCAGTGCCGTTTATGCCAAACGCGCTTGGTACGACAGCGAGCACAATTCAGCTTACG CTGACAACGTACTTGGTCATGATTGGTGCCGGTCAGCTCTTGTTTGGACCGCTATCGGACCGACTGGGGC GCCGCCCCGTTCTACTGGGAGGTGGCCTCGCCTACGTTGTGGCGTCAATGGGCCTCGCTCTTACGTCATC GGCTGAAGTCTTTCTGGGGCTTCGGATTCTTCAGGCTTGTGGTGCCTCGGCGTGCCTTGTTTCCACATTT GCAACAGTACGTGACATTTACGCAGGTCGCGAGGAAAGTAATGTCATTTACGGCATACTCGGATCCATGC TGGCCATGGTCCCGGCGGTAGGCCCATTGCTCGGAGCGCTCGTCGACATGTGGCTTGGGTGGCGGGCTAT CTTTGCGTTTCTAGGTTTGGGCATGATCGCTGCATCTGCAGCAGCGTGGCGATTCTGGCCTGAAACCCGG GTGCAACGAGTTGCGGGCTTGCAATGGTCGCAGCTGCTACTCCCCGTTAAGTGCCTGAACTTCTGGTTGT ACACGTTGTGTTACGCCGCTGGAATGGGTAGCTTCTTCGTCTTTTTCTCCATTGCGCCCGGACTAATGAT GGGCAGGCAAGGTGTGTCTCAGCTTGGCTTCAGCCTGCTGTTCGCCACAGTGGCAATTGCCATGGTGTTT ACGGCTCGTTTTATGGGGCGTGTGATACCCAAGTGGGGCAGCCCAAGTGTCTTGCGAATGGGAATGGGAT GCCTGATAGCTGGAGCAGTATTGCTTGCCATCACCGAAATATGGGCTTCGCAGTCCGTGTTAGGCTTTAT TGCTCCAATGTGGCTAGTGGGTATTGGTGTCGCCACAGCGGTATCTGTGTCGCCCAATGGCGCTCTTCGA GGATTCGACCATGTTGCTGGAACGGTCACGGCAGTCTACTTCTGCTTGGGCGGTGTACTGCTAGGAAGCA TCGGAACGTTGATCATTTCGCTGTTGCCGCGCAACACGGCTTGGCCGGTTGTCGTGTACTGTTTGACCCT TGCAACAGTCGTGCTCGGTCTGTCTTGTGTTTCCCGAGTGAAGGGCTCTCGCGGCCAGGGGGAGCATGAT GTGGTCGCGCTACAAAGTGCGGAAAGTACATCAAATCCCAATCGTTGAGAGAATGTGGCAAGCTATCGCC CAACAAATCGCTGCAGCCGACCCAAAACCGCTACGCGGTTTCGGTCGGCTGAGCTCAGGCGTTAGGCCTC GCCGAAGCGAAAGATCGCTACTTGAAGTGTTGACGCCTTTGTTTTAAAGTTTCGCGTCTATCTTTCTGAT TTTGTTAAAAAATCAGACTTTGATTAATCATGTTAGACGTCAGAGGTATTTTGACTTAAACGCCTCTGAG GTCGAATTAACGTTAGCCACCAAGAAGGTGCCATGAAAACATTTGCCGCATATGTAATTATCGCGTGTCT TTCGAGTACGGCATTAGCTGGTTCAATTACAGAAAATACGTCTTGGAACAAAGAGTTCTCTGCCGAAGCC GTCAATGGTGTCTTCGTGCTTTGTAAAAGTAGCAGTAAATCCTGCGCTACCAATGACTTAGCTCGTGCAT CAAAGGAATATCTTCCAGCATCAACATTTAAGATCCCCAACGCAATTATCGGCCTAGAAACTGGTGTCAT AAAGAATGAGCATCAGGTTTTCAAATGGGACGGAAAGCCAAGAGCCATGAAGCAATGGGAAAGAGACTTG ACCTTAAGAGGGGCAATACAAGTTTCAGCTGTTCCCGTATTTCAACAAATCGCCAGAGAAGTTGGCGAAG TAAGAATGCAGAAATACCTTAAAAAATTTTCCTATGGCAACCAGAATATCAGTGGTGGCATTGACAAATT CTGGTTGGAAGGCCAGCTTAGAATTTCCGCAGTTAATCAAGTGGAGTTTCTAGAGTCTCTATATTTAAAT AAATTGTCAGCATCTAAAGAAAACCAGCTAATAGTAAAAGAGGCTTTGGTAACGGAGGCGGCACCTGAAT ATCTAGTGCATTCAAAAACTGGTTTTTCTGGTGTGGGAACTGAGTCAAATCCTGGTGTCGCATGGTGGGT TGGGTGGGTTGAGAAGGAGACAGAGGTTTACTTTTTCGCCTTTAACATGGATATAGACAACGAAAGTAAG TTGCCGCTAAGAAAATCCATTCCCACCAAAATCATGGAAAGTGAGGGCATCATTGGTGGCTAAAACAAAG TTAAACATCATGAGGGAAGTGGTGATCGCCGAAGTATCGACTCAACTATCAGAGGTAGTTGGCGTCATCG AGCGCCATCTCGAACCGACGTTGCTGGCCGTACATTTGTACGGCTCCGCAGTGGATGGCGGCCTGAAGCC ACACAGTGATATTGATTTGCTGGTTACGGTGACCGTAAGGCTTGATGAAACAACGCGGCGAGCTTTGATC AACGACCTTTTGGAAACTTCGGCTTCCCCTGGAGAGAGCGAGATTCTCCGCGCTGTAGAAGTCACCATTG TTGTGCACGACGACATCATTCCGTGGCGTTATCCAGCTAAGCGCGAACTGCAATTTGGAGAATGGCAGCG CAATGACATTCTTGCAGGTATCTTCGAGCCAGCCACGATCGACATTGATCTGGCTATCTTGCTGACAAAA GCAAGAGAACATAGCGTTGCCTTGGTAGGTCCAGCGGCGGAGGAACTCTTTGATCCGGTTCCTGAACAGG ATCTATTTGAGGCGCTAAATGAAACCTTAACGCTATGGAACTCGCCGCCCGACTGGGCTGGCGATGAGCG AAATGTAGTGCTTACGTTGTCCCGCATTTGGTACAGCGCAGTAACCGGCAAAATCGCGCCGAAGGATGTC GCTGCCGACTGGGCAATGGAGCGCCTGCCGGCCCAGTATCAGCCCGTCATACTTGAAGCTAGACAGGCTT ATCTTGGACAAGAAGAAGATCGCTTGGCCTCGCGCGCAGATCAGTTGGAAGAATTTGTTCACTACGTGAA AGGCGAGATCACCAAGGTAGTCGGCAAATAATGTCTAACAATTCGTTCAAGCCGACGCCGCTTCGCGGCG CGGCTTAACTCAAGCGTTAGATGCACTAAGCACATAATTGCTCACAGCCAAACTATCAGGTCAAGTCTGC TTTTATTATTTTTAAGCGTGCATAATAAGCCCTACACAAATTGGGAGATATATCATGAAAGGCTGGCTTT TTCTTGTTATCGCAATAGTTGGCGAAGTAATCGCAACATCCGCATTAAAATCTAGCGAGGGCTTTACTAA GCTTGCCCCTTCCGCCGTTGTCATAATCGGTTATGGCATCGCATTTTATTTTCTTTCTCTGGTTCTGAAA TCCATCCCTGTCGGTGTTGCTTATGCAGTCTGGTCGGGACTCGGCGTCGTCATAATTACAGCCATTGCCT GGTTGCTTCATGGGCAAAAGCTTGATGCGTGGGGCTTTGTAGGTATGGGGCTCATAATTGCTGCCTTTTT GCTCGCCCGATCCCCATCGTGGAAGTCGCTGCGGAGGCCGACGCCATGGTGACGGTGTTCGGCATTCTGA ATCTCACCGAGGACTCCTTCTTCGATGAGAGCCGGCGGCTAGACCCCGCCGGCGCTGTCACCGCGGCGAT CGAAATGCTGCGAGTCGGATCAGACGTCGTGGATGTCGGACCGGCCGCCAGCCATCCGGACGCGAGGCCT GTATCGCCGGCCGATGAGATCAGACGTATTGCGCCGCTCTTAGACGCCCTGTCCGATCAGATGCACCGTG TTTCAATCGACAGCTTCCAACCGGAAACCCAGCGCTATGCGCTCAAGCGCGGCGTGGGCTACCTGAACGA TATCCAAGGATTTCCTGACCCTGCGCTCTATCCCGATATTGCTGAGGCGGACTGCAGGCTGGTGGTTATG CACTCAGCGCAGCGGGATGGCATCGCCACCCGCACCGGTCACCTTCGACCCGAAGACGCGCTCGACGAGA TTGTGCGGTTCTTCGAGGCGCGGGTTTCCGCCTTGCGACGGAGCGGGGTCGCTGCCGACCGGCTCATCCT CGATCCGGGGATGGGATTTTTCTTGAGCCCCGCACCGGAAACATCGCTGCACGTGCTGTCGAACCTTCAA AAGCTGAAGTCGGCGTTGGGGCTTCCGCTATTGGTCTCGGTGTCGCGGAAATCCTTCTTGGGCGCCACCG TTGGCCTTCCTGTAAAGGATCTGGGTCCAGCGAGCCTTGCGGCGGAACTTCACGCGATCGGCAATGGCGC TGACTACGTCCGCACCCACGCGCCTGGAGATCTGCGAAGCGCAATCACCTTCTCGGAAACCCTCGCGAAA TTTCGCAGTCGCGACGCCAGAGACCGAGGGTTAGATCATGCCTAGCATTCACCTTCCGGCCGCCCGCTAA ATATCTCCTTTTGGGTTGTTAATAAAACATCCAATAAGTTGACTGTGCGTGAAAAAGAAAGTTTTGTGTG ATGGCGTTGAAGATCGCACCGTTAAGCTCTTATGTGGGATGGTGCAGAGCTCGACGACTACCGATAAAAC GCAACCGCCGCAAACAGACAAGAAAAAGCCCCAACTGATAACAGTTGGGGCTTCAGTATTGTGATTGGTG GAGCAATAGCACCCTGAACCCAAAACCTTCTCGCTCAACCGGTAGTGGCTGATAACAACTCGTGAGGGCT ATTGCGGGTTAAGCATTTAGCGATGTCTAGGGCCAGACTGGACGTCTGAACGCAAGCCGCTGATACTGTA CATAACCACAGTATCAGCGGAGGATACCCATGTCGCTGGCAAGGAACGCCACGGCGAGTCAATCGCCCAC TCAAACAAACGGTTACGAACGCCACCAACCCGACCAGACGCTGCTCTACCAGCTGGTTGAGCAGCACTAC CCAGCCTTCAAAGCCTCACTCGAAGCCCAAGGTCAACACCTGCCTCGCTACATCCAACAAGAATTCAACG ACCTCCTCCAATGTGGCCGTCTGGAGTATGGTTTCATGCGGGTTCGCTGCGAGGATTGTCATCACGAGCG TCTGGTCGCCTTCAGCTGTAAACGACGCGGCTTTTGCCCTAGCTGCGGTGCCCGCCGGATGGCCGAGAGT GCGGCGCTGCTGATAGACGAAGTCTTCCCCAAGGAGCCCATTCGCCAGTGGGTGCTCAGCTTTCCTTTCC AGCTACGCTTTTTGCTGGCTCGCCATCCCCAGCTGATGGGCCAGGTCTTGAGTATCGTCTATCGTACACT CTCAACTCATCTGATCAAAAAAGCCGGTTACACCAAAGCCTCTGCACAAACTGGCTCAGTGACTCTTATC CAACGCTTTGGCTCCGCGCTAAATCTCAATGTCCACTACCACATGCTGTTTCTCGATGGTGTCTATGCCG AAGATGACTATGGCAAGCAACGCTTCCATCGTGTCAAGGCACCCACTTACGATGAGCTGAATACGCTCGC TCACACCCTCAGCCATCGCATCGCTCGCTGCATGGAAAAGCGTGGGATTTTGGAGCGTGATGCCGAGAAT ACGTGGTTGACACTGGAAGAGGGCGAAGACGATACGCTGACTCAATTACATGGTGCTTCGGTTACGTATC GCATTGCCGTCGGCCCCCAGCAAGGGCGCAAAGTCTTCACCCTGCAAACCTTGCCAGGGCGTGAGGATAA AGCCGACTCAAGCAGTCGAGTAGCCAACCATGCTGGTTTCTCGCTACACGCCGGTGTGATGGCCGAAGCG CATCAGCGGGATAAGCTTGAGCGCTTGTGTCGCTACATTAGTCGGCCAGCGGTTTCAGAAAAACGTCTGG CATTAACCGCCAATGGGCAGGTGCGTTACGAGCTCAAAACTCCGTACCGCAATGGCACCACCCATGTGAT CTTCGAGCCGCTGGACTTCATCGCCAAACTCGCTGCGTTGGTACCTAAGCCGCGAGTCAACCTCACACGC TTCCACGGCGTCTTTGCACCGAACAGCAAACACCGAGTTCAAGTAACACCCGCCAAGCGGGGCAAGAAGC CCGACAAATCGGAAGGTCTCGATACTAACTGGCGTGACAAGAGTCCTGCAGAGCGCCACCGCGCCATGAC CTGGATGCAACGCCTCAAGCGAGTCTTCAATATTGATATTGAAGTCTGCGAACACTGCGGCGGTCACGTC AAAGTGATTGCCAGCATCGAAGATCCGAAGGTCATTGAGCAGATTCTCAAGCATCTGAAACAGAAAACAG CCAAGGCGAATGCCGCCAAGCAGCGTGAGCTGCCACCAGAACGAGCGCCGCCACTGACTCCCAGCCTGTT CGATCCATCACAGAGTCGTCTCTTTGACTGACGACCCCAAATCCAACACTGCTCAACACTGCCAACTTTT AAACGGGGCGGTGGGGCAGTTTGTATCTCTCGAGCTATCAGGCTAGAGATTTTACCGCCAAATCGAACCT TATTAGAGCGGTTTAGGCTGGACCGGCAGTTAAAATTGGGGCTTGAGCGGTAAACGAGTGAGGGAATTTC AGGTAAGATACTTCGGATGAGGAGCAAAAAGGTGGTTTATACTTCCTATACCCGCAGGATATCAGTATTT GGCTCGTTCAACTGATAGCTGAGCTGCCCCACCTTACCCTGCACACTGACTTGCAACCTTTGATTGGCAC TGTAGCTCAGCTGCAGATCCTGCACCTTGAGCCCTTGGTGAATTGTCTTGTCGTTGGTCTTCTGAGCAGG CGAATCATCGCCGCCACCGCCACCACAGGCGGACAAAGCTGCCGTAAGCAGCAAAATTACCACTGTTTGT TTCATATAGCCCCCATAAAAAGCGGGGGCAATATATAGTCAACAAACTACCACTTCAATAAAAAACAACA ATTTTTGCCACAACTGAAATCATTTGGTTACAAATGAAATAAAGGCGAGACGATTAAGTGTTTTTTATGT TAACCACAGCCATTATTAAGTATGCCGAACGATAAAAGCGTGCGCTCTAATAACTTCAGGCAAATCTGTC GTCAGAGAGGGTTTGCAGCGGATCTTTGCCCTGCTCGTACCAACCATCACGGGTATTTTGCACGCAATCA AATGCCTGAATATAAGGCTTGATATCTATGATAGGGGTGCCGTTGAGCATATCGATTCCCTTAACATGAA TGCGGTTGCCCTCCAGCCGGTCGATTTCCAGTATCGACAGGCCTATGGGGTTGGGGCGCTTGGGCGAACG GGTAGCAAATACACCGCGCAGTTGGTTATCGAGAAAAGGTTTAACCTTGAGCGCGCCCTGCTTGCATTGA TGCAGATGAAACAGCACATAAACATGAGAAAAACCATCGAGGTCCGCCAGCCCTTCGGCATAGTCGGGAT GGATCACCAAAACCCCTTGATTATCGGCGACCTTGCTGCCCTGAATCGGCATGTTGGCCAGTTCTGTGTA CTGGGTTTCGGCGTGGCCTATGGCGGTAAAGCTGACAACTTGCATAACAACTCCGTTGCAAATACAGAAT TGCAGTCTACCTCAGCTTGGCAAAGGGGTCTTCAAAGCAACTCACATTCTTAGGGAAGTGCTTCTTGCAA AGGACTAAGGCCATTTGCGGCTTACAGCCTTGCATCCAGACTTATAAGCCGATGCAGAGCACACATGGTA TTTGTTTGCACCTTCCTTAGGGCAGGCTCAGTAAGGTCTCGCCGTGAAAGTACTGTTTTCTGAGACTTTT GCCCTCTTCAGAGTTCAACACCTGATCCAAATTAGCTTGAAAGCGCATTACCAGTTCAGGCGGCACCTTG GCACTGAAGGCAAAGCACAAGGGCCTGTGACTCACCTTGACCAAGGGTTGCATTATCTCGGGGTCGTAGC CCCCGCGTCTCAGAGTGCTGAGTAAGGTTAACCTATTGCTGGACAGCAAGCTGGCCCGGCCGCTGTTGAG CACCTTGACTGCCTGCTCCAGGCTACTGGTACGTACCAAAAAAGCCGGATCGAAACCCTGGCTCAGCAGC AACTGCTCGCCGACATCTTCCCTGACGGTTGCCACCAGCAAATGCTTGGCATCCTCCAACTTGGTCAGCG CAGGCGCTGAGCGTTTGAGCGCATAGAGATTCAGCTCCAGGGTGCCAAGGCTGCAGGCCCATTGAAACAG CGGTTCCCTCACCTGAGTACGGGTTGTGGAAAACAGCACCACGTTATCGCGACTCCCCAACATATAGTAA CCACGGGCCCAGGGCAGAAGTTCTATGGTCTGGGGCTCTGTACCTGTCCGCCGCCAAACGGCCCGCAGCA CATCGGTGGCAAATCCGGATACTTCCCCATTATCCAGGCTGAAGTTATAGGGTGGATACTCTTCCGTGAG ATATCTGAGTTGACCAAGCCCCACGGCAGCCTGAACGCTGCAACAATAGAGCAATAGCGGAAGCAGCAAG CGCATAACTATCCCCCGAGACAACAGTATCTATTAAGTGTTGTCAAAGGCGGCTCAATATACAAACCCGG GTTTTAATGTTTAGTAAGTTGTTGTATTCATATGTTTTTTAACAAAACCGTTCGAAAGGAGAGTCCTGGC ATTCAGCAAGCCATGTCAGCAGCCCGTAAAGGGCTTGAATTATTTTTCACGACGCCTTGAGCATGGAACA CACTTAAAGGCTCTCAAAATGTCGATTTCCCCCCTTAAAATCGCGATTTAAGCACTTCTCAAAACCATGA TTTTAAAGGTTTTATTTTTAGTGATATTCCAGAGTGCCGATGTTAGCCTGCAAAGGTTTTTGGGAAGGCG CCAACAA
Region Details
| Region | 1 |
| Region Length | 20.7Kb |
| Completeness(score) | incomplete(50) |
| Specific Keyword | transposase,integrase |
| Region Position | 135084-155810 |
| # tRNA | 0 |
| # Total Proteins | 9 |
| # Phage Hit Proteins | 7 |
| # Hypothetical Proteins | 1 |
| Phage + Hypothetical Protein % | 88.8% |
| # Bacterial Proteins | 1 |
| Attachment Site | yes |
| # Phage Species | 7 |
| Most Common Phage Name(hit genes count) | PHAGE_Staphy_SPbeta_like_NC_029119(2) PHAGE_Salmon_SJ46_NC_031129(2) PHAGE_Mycoba_Shipwreck_NC_031261(1) PHAGE_Salisa_1_NC_017983(1) PHAGE_Mycoba_Charlie_NC_023729(1) PHAGE_Erwini_vB_EamM_ChrisDB_NC_031126(1) PHAGE_Mycoba_Malithi_NC_026605(1) PHAGE_Shigel_Ss_VASD_NC_028685(1) PHAGE_Vibrio_PWH3a_P1_NC_020863(1) PHAGE_Bacill_BCP78_NC_018860(1) PHAGE_Brevib_Jenst_NC_028805(1) PHAGE_Escher_TL_2011c_NC_019442(1) PHAGE_Mycoba_Butters_NC_021061(1) PHAGE_Bacill_Blue_NC_031056(1) PHAGE_Escher_P13374_NC_018846(1) PHAGE_Clostr_vB_CpeS_CP51_NC_021325(1) PHAGE_Pseudo_PS_1_NC_029066(1) |
| First Most Common Phage # | 1 |
| First Most Common Phage % | 22.22% |
| GC % | 53.21% |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA: | The number of tRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NC_021667.1| Klebsiella pneumoniae plasmid IncA/C-LS6, complete sequence. 171925, gc%: 52.29%
Download details as .txt file: detail.txt file_download
Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File
Hits against Bacterial Database or GenBank File
Region 1, total 11 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 135084..135095 | attL | 0.0 | Showinfo_outline |
| 2 | 136064..137821 | PHAGE_Pseudo_PS_1_NC_029066: DNA primase; D647_p34141; phage(gi985757675) | 7.20e-25 | Showinfo_outline |
| 3 | 137763..138086 | hypothetical protein; D647_p34142 | 0.0 | Showinfo_outline |
| 4 | complement(138562..139566) | PROPHAGE_Shewan_MR-1: IS110 family transposase; D647_p34143; phage(gi24375433) | 7.98e-59 | Showinfo_outline |
| 5 | complement(139645..142617) | PROPHAGE_Xantho_33913: Tn5041 transposase; D647_p34144; phage(gi21231545) | 2.45e-46 | Showinfo_outline |
| 6 | complement(142620..142991) | PHAGE_Clostr_vB_CpeS_CP51_NC_021325: putative resolvase; D647_p34145; phage(gi509140089) | 3.34e-19 | Showinfo_outline |
| 7 | complement(143215..143871) | TnpM; D647_p34146 | 0.0 | Showinfo_outline |
| 8 | 143332..144048 | PROPHAGE_Brucel_1330: transposase, putative; D647_p34147; phage(gi23502708) | 2.64e-53 | Showinfo_outline |
| 9 | complement(144436..145449) | PHAGE_Mycoba_Butters_NC_021061: integrase; D647_p34148; phage(gi479336499) | 2.26e-12 | Showinfo_outline |
| 10 | 145596..146078 | PHAGE_Bacill_Blue_NC_031056: hypothetical protein; D647_p34149; phage(gi100007) | 1.15e-22 | Showinfo_outline |
| 11 | 155810..155821 | attR | 0.0 | Showinfo_outline |
Sequence
>135084..135095
AAACCCCTGCTT
Sequence
>136064..137821
KlebsiellapneumoniaeMLGFTLRRKPMSYYKADTVREAANGNWLFILAALAPHLEPALRKPGRHVSCPIHGGKDGFRLFKDAHLTGGGVCNTCGANHDGFELLMWLNNWDFKQCLSEVGDYLGVEKEQPQYQQAAAPTRAPVQAKAPVQQEPMKVNNKVLDSKNRKKSIAGTLIAHGKAPYEHNEDNELSYFAFIRDKSGLERTIWGVDLERAIGESEAKYGDEIVMTNLGREPVTVVVEVKDEQGNVVREQPMQTHRNTWLVERRGATVTQFRARSNGGVEPVSHHVESAPVVNRKVETPAPQVQPAATQPEEQSSENKPKVVPMFREQPKPWLLELQEEMEKRMERERAYSARLREKIEKVWNECLPFSSHVTEPMRLYFKNRELLFKVDEVEKTDCLRFNPAMAYYDEDGNEVGKFPAIVCAIRDVEGNLVTLHRTYLTQNGKKAKVGNAKKMMPIPDGLDVNGAAIRLGEPTEGILGVAEGLETALSAYRVTQIPVWSTVNATLMESFEVPEGVHTVLIWADKDKSVTGEKSANVLKAKLEKRGIRVYVLLPKLPIPPRAKGIDWNDVLMSQGSLGFPNARYLRDFIARRRAEYGRH
Sequence
>137763..138086
KlebsiellapneumoniaeMLATCAISLREGELSMAVIDVSKVDTTPGNDAVCPFSPPEGWEGDSAAYVELMRSRYRHLMHGQRMMVTASFARREPIQVTGPFADEATKIINSMKMNKAKPTALSA
Sequence
>complement(138562..139566)
KlebsiellapneumoniaeMENIALIGIDLGKNSFHIHCQDRRGKAVYRKKFTRPKLIEFLATCPATTIAMEACGGSHFMARKLEELGHSPKLISPQFVRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGISVPRGAAVISRLSTILEDNSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLKRKLDEDEVGQRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRDLLCRKSNFVVTCALENKLARIAWALTARQQTYVA
Sequence
>complement(139645..142617)
KlebsiellapneumoniaeMPRRSILSATERESLLALPDAKDELIRHYTFNETDLSVIRQRRGAANRLGFAVQLCYLRFPGTFLGVDEPPFPPLLRMVAAQLKMPVESWSEYGQREQTRREHLVELQTVFGFKPFTMSHYRQAVHTLTELALQTDKGIVLASALVENLRRQSIILPAMNAIERASAEAITRANRRIYAALTDSLLSPHRQRLDELLKRKDGSKVTWLAWLRQSPAKPNSRHMLEHIERLKSWQALDLPAGIERQVHQNRLLKIAREGGQMTPADLAKFEVQRRYATLVALAIEGMATVTDEIIDLHDRIIGKLFNAAKNKHQQQFQASGKAINDKVRMYGRIGQALIEAKQSGSDPFAAIEAVMPWDTFAASVTEAQTLARPADFDFLHHIGESYATLRRYAPQFLGVLKLRAAPAAKGVLDAIDMLRGMNSDSARKVPADAPTAFIKPRWAKLVLTDDGIDRRYYELCALSELKNALRSGDVWVQGSRQFKDFDEYLVPVEKFATLKLASELPLAVATDCDQYLHDRLELLEAQLATVNRMAAANDLPDAIITTASGLKITPLDAAVPDAAQAMIDQTAMLLPHLKITELLMEVDEWTGFTRHFTHLKTSDTAKDKTLLLTTILADAINLGLTKMAESCPGTTYAKLSWLQAWHIRDETYSTALAELVNAQFRQPFAGNWGDGTTSSSDGQNFRTGSKAESTGHINPKYGSSPGRTFYTHISDQYAPFSAKVVNVGIRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFGLMHLLGFRFAPRIRDLGETKLFIPKGDAAYDALKPMISSDRLNIKQIRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFYRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATSALRGNGTALDDTLLQYLSPLGWEHINLTGDYLWRSSAKVGAGKFRPLRPLPPA
Sequence
>complement(142620..142991)
KlebsiellapneumoniaeMDRLARNLDDLRRIVQGLTQRGVRMEFVKEGLKFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIVLAKQRGAYRGRKKSLNSEQIAELKRRVAAGDQKTLVARDFGISRETLYQYLRED
Sequence
>complement(143215..143871)
KlebsiellapneumoniaeMIAFNHVVPVLNLSVFNVRRAPAFAFEQSKRATIGGRFIRVDESRDLPLLHVVEDFTQKPVCSFAVTTGGEIKIDSAAPAVDGPVQIRPAAIDLHVGFIHVPRAKIGRVTPVPAQPFFHFRRITLNPAVNRGVIDIHSAFSQHLLQLTVTDAVFAVPAYGPQNDVTLKMPAFEWVHVQLHQQKGMISLSPPTICNSAPCANDVRIELNFLLIDIFRQR
Sequence
>143332..144048
KlebsiellapneumoniaeMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Sequence
>complement(144436..145449)
KlebsiellapneumoniaeMKTATAPLPPLRSVKVLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
Sequence
>145596..146078
KlebsiellapneumoniaeMRTLKVSLMAAKAKNGVIGCGPDIPWSAKGEQLLFKALTYNQWLLVGRKTFESMGALPNRKYAVVTRSGWTSNDDNVVVFQSIEEAMDRLAEFTGHVIVSGGGEIYRETLPMASTLHLSTIDIEPEGDVFFPSIPNTFEVVFEQHFTSNINYCYQIWKKG
Sequence
>155810..155821
AAACCCCTGCTT
Klebsiella pneumoniae plasmid IncA/C-LS6, complete sequence
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Questionable (score 70-90)
Incomplete (score < 70)
Viewer Options
Length: 171925 bps
Phages: 1
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Locus 1: attL (Region 1)
Locus: attLORF Start: 135084
ORF Stop: 135095
Strand: Forward
Protein Sequence: AAACCCCTGCTT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attL
Homolog/Ortholog E-Value: N/A
Locus 2: D647_p34141 (Region 1)
Locus: D647_p34141ORF Start: 136064
ORF Stop: 137821
Strand: Forward
Protein Sequence: MLGFTLRRKPMSYYKADTVREAANGNWLFILAALAPHLEPALRKPGRHVSCPIHGGKDGFRLFKDAHLTGGGVCNTCGANHDGFELLMWLNNWDFKQCLSEVGDYLGVEKEQPQYQQAAAPTRAPVQAKAPVQQEPMKVNNKVLDSKNRKKSIAGTLIAHGKAPYEHNEDNELSYFAFIRDKSGLERTIWGVDLERAIGESEAKYGDEIVMTNLGREPVTVVVEVKDEQGNVVREQPMQTHRNTWLVERRGATVTQFRARSNGGVEPVSHHVESAPVVNRKVETPAPQVQPAATQPEEQSSENKPKVVPMFREQPKPWLLELQEEMEKRMERERAYSARLREKIEKVWNECLPFSSHVTEPMRLYFKNRELLFKVDEVEKTDCLRFNPAMAYYDEDGNEVGKFPAIVCAIRDVEGNLVTLHRTYLTQNGKKAKVGNAKKMMPIPDGLDVNGAAIRLGEPTEGILGVAEGLETALSAYRVTQIPVWSTVNATLMESFEVPEGVHTVLIWADKDKSVTGEKSANVLKAKLEKRGIRVYVLLPKLPIPPRAKGIDWNDVLMSQGSLGFPNARYLRDFIARRRAEYGRH
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: D647_p34141, DNA primase, phage(gi985757675), PHAGE_Pseudo_PS_1_NC_029066
Homolog/Ortholog E-Value: 7.20e-25
Locus 3: D647_p34142 (Region 1)
Locus: D647_p34142ORF Start: 137763
ORF Stop: 138086
Strand: Forward
Protein Sequence: MLATCAISLREGELSMAVIDVSKVDTTPGNDAVCPFSPPEGWEGDSAAYVELMRSRYRHLMHGQRMMVTASFARREPIQVTGPFADEATKIINSMKMNKAKPTALSA
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: D647_p34142, hypothetical protein
Homolog/Ortholog E-Value: N/A
Locus 4: D647_p34143 (Region 1)
Locus: D647_p34143ORF Start: 138562
ORF Stop: 139566
Strand: Backward
Protein Sequence: MENIALIGIDLGKNSFHIHCQDRRGKAVYRKKFTRPKLIEFLATCPATTIAMEACGGSHFMARKLEELGHSPKLISPQFVRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGISVPRGAAVISRLSTILEDNSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLKRKLDEDEVGQRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRDLLCRKSNFVVTCALENKLARIAWALTARQQTYVA
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: D647_p34143, IS110 family transposase, phage(gi24375433), PROPHAGE_Shewan_MR-1
Homolog/Ortholog E-Value: 7.98e-59
Locus 5: D647_p34144 (Region 1)
Locus: D647_p34144ORF Start: 139645
ORF Stop: 142617
Strand: Backward
Protein Sequence: MPRRSILSATERESLLALPDAKDELIRHYTFNETDLSVIRQRRGAANRLGFAVQLCYLRFPGTFLGVDEPPFPPLLRMVAAQLKMPVESWSEYGQREQTRREHLVELQTVFGFKPFTMSHYRQAVHTLTELALQTDKGIVLASALVENLRRQSIILPAMNAIERASAEAITRANRRIYAALTDSLLSPHRQRLDELLKRKDGSKVTWLAWLRQSPAKPNSRHMLEHIERLKSWQALDLPAGIERQVHQNRLLKIAREGGQMTPADLAKFEVQRRYATLVALAIEGMATVTDEIIDLHDRIIGKLFNAAKNKHQQQFQASGKAINDKVRMYGRIGQALIEAKQSGSDPFAAIEAVMPWDTFAASVTEAQTLARPADFDFLHHIGESYATLRRYAPQFLGVLKLRAAPAAKGVLDAIDMLRGMNSDSARKVPADAPTAFIKPRWAKLVLTDDGIDRRYYELCALSELKNALRSGDVWVQGSRQFKDFDEYLVPVEKFATLKLASELPLAVATDCDQYLHDRLELLEAQLATVNRMAAANDLPDAIITTASGLKITPLDAAVPDAAQAMIDQTAMLLPHLKITELLMEVDEWTGFTRHFTHLKTSDTAKDKTLLLTTILADAINLGLTKMAESCPGTTYAKLSWLQAWHIRDETYSTALAELVNAQFRQPFAGNWGDGTTSSSDGQNFRTGSKAESTGHINPKYGSSPGRTFYTHISDQYAPFSAKVVNVGIRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFGLMHLLGFRFAPRIRDLGETKLFIPKGDAAYDALKPMISSDRLNIKQIRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFYRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATSALRGNGTALDDTLLQYLSPLGWEHINLTGDYLWRSSAKVGAGKFRPLRPLPPA
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: D647_p34144, Tn5041 transposase, phage(gi21231545), PROPHAGE_Xantho_33913
Homolog/Ortholog E-Value: 2.45e-46
Locus 6: D647_p34145 (Region 1)
Locus: D647_p34145ORF Start: 142620
ORF Stop: 142991
Strand: Backward
Protein Sequence: MDRLARNLDDLRRIVQGLTQRGVRMEFVKEGLKFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIVLAKQRGAYRGRKKSLNSEQIAELKRRVAAGDQKTLVARDFGISRETLYQYLRED
Homolog/Ortholog Species: Phage-like protein
Homolog/Ortholog Protein: D647_p34145, putative resolvase, phage(gi509140089), PHAGE_Clostr_vB_CpeS_CP51_NC_021325
Homolog/Ortholog E-Value: 3.34e-19
Locus 7: D647_p34146 (Region 1)
Locus: D647_p34146ORF Start: 143215
ORF Stop: 143871
Strand: Backward
Protein Sequence: MIAFNHVVPVLNLSVFNVRRAPAFAFEQSKRATIGGRFIRVDESRDLPLLHVVEDFTQKPVCSFAVTTGGEIKIDSAAPAVDGPVQIRPAAIDLHVGFIHVPRAKIGRVTPVPAQPFFHFRRITLNPAVNRGVIDIHSAFSQHLLQLTVTDAVFAVPAYGPQNDVTLKMPAFEWVHVQLHQQKGMISLSPPTICNSAPCANDVRIELNFLLIDIFRQR
Homolog/Ortholog Species: Non phage-like protein
Homolog/Ortholog Protein: D647_p34146, TnpM
Homolog/Ortholog E-Value: N/A
Locus 8: D647_p34147 (Region 1)
Locus: D647_p34147ORF Start: 143332
ORF Stop: 144048
Strand: Forward
Protein Sequence: MELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
Homolog/Ortholog Species: Transposase
Homolog/Ortholog Protein: D647_p34147, transposase, putative, phage(gi23502708), PROPHAGE_Brucel_1330
Homolog/Ortholog E-Value: 2.64e-53
Locus 9: D647_p34148 (Region 1)
Locus: D647_p34148ORF Start: 144436
ORF Stop: 145449
Strand: Backward
Protein Sequence: MKTATAPLPPLRSVKVLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
Homolog/Ortholog Species: Integrase
Homolog/Ortholog Protein: D647_p34148, integrase, phage(gi479336499), PHAGE_Mycoba_Butters_NC_021061
Homolog/Ortholog E-Value: 2.26e-12
Locus 10: D647_p34149 (Region 1)
Locus: D647_p34149ORF Start: 145596
ORF Stop: 146078
Strand: Forward
Protein Sequence: MRTLKVSLMAAKAKNGVIGCGPDIPWSAKGEQLLFKALTYNQWLLVGRKTFESMGALPNRKYAVVTRSGWTSNDDNVVVFQSIEEAMDRLAEFTGHVIVSGGGEIYRETLPMASTLHLSTIDIEPEGDVFFPSIPNTFEVVFEQHFTSNINYCYQIWKKG
Homolog/Ortholog Species: Hypothetical protein
Homolog/Ortholog Protein: D647_p34149, hypothetical protein, phage(gi100007), PHAGE_Bacill_Blue_NC_031056
Homolog/Ortholog E-Value: 1.15e-22
Locus 11: attR (Region 1)
Locus: attRORF Start: 155810
ORF Stop: 155821
Strand: Forward
Protein Sequence: AAACCCCTGCTT
Homolog/Ortholog Species: Attachment site
Homolog/Ortholog Protein: attR
Homolog/Ortholog E-Value: N/A
Lysis
Terminase
Portal Protein
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Other
Transposase
Fiber Protein
Plate Protein
tRNA
Plate Protein
tRNA
Download data as .txt file: png_input file_download