gi|00000000|ref|CP005485.1|  Lactobacillus rhamnosus LOCK908, complete genome. 2990900, gc%: 46.76%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
837328..837344                     attL                                                                                 N/A                 CCCTTACTCTCCGTTTT
complement(837462..838589)         PHAGE_Lactob_Lrm1_NC_011104: integrase; LOCK908_0851; phage(gi195661224)             0.0                 LactobacillusrhamnosusLOCK908MASISKRGKKWQYRVSYKDNDGTRKYVNKGGFPSKKAADIAATEVERQHNRGANLDLNKITLIDYWDKWIELYKSGKHSRITEARYKTIRKQLLAYWGESRELKSISKSDWQGFINEFGKKRAKDTVSKLNGYVRSMADSAVDDQIIYTNFTHNVVLTGNEGQAGIIKYLQVKDLRKLVNYCLEFADYEHIAYYIIATGALTGARYSEVLGLTWDHVDLKKHVVHITRTWDHRYGSGFAATKNKSSVRDIDITRELADLLLRLKKEQQEVYVAQGYRDSKQLLFRSIRHNMLSSTAINKDLRTIEKALDISPAITFHGLRHTHVSYLIANHVDINYISKRLGHANTMITQKVYAHLLEDQRKEQVSQTLQALSRL
839099..839320                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0852; phage(gi557308017)     9.33e-30            LactobacillusrhamnosusLOCK908MENGIYIVDEKDEVWDIDEASGMYGMFSSKPNIGPNEVAALLSGKALVDLSDGEYIHWIQLTPDAIKTARLRQ
complement(839603..840712)         Type I restriction-modification system, specificity subunit S; LOCK908_0853          N/A                 LactobacillusrhamnosusLOCK908MTTNKQMVPELRFKGFTDAWEQRKVSELADRYDNLRVPITASERVAGETPYYGANGIQDYVEGFTHNGEFVLVAEDGANDLQNYPVQYVDGKVWVNNHAHVLQAKEERVDNKFLTNALKHTNIEPYLVGGGRAKLNADVMMKINFKVPTLPEQVQIGKFFDNLDHLITLHQRKLEKLQELKKGYLQKLFPKNGSKFPQLRFAGFTDAWEKRPIKKIATVNGGKDYKHLNKGDIPVYGTGGYMLSVDQALSEENGIGIGRKGTINSPYILRAPYWTVDTLFYVIPKGTQDLNFLYAIFQRVNWKKYDESTGVPSLSKQTINAVEVTTPTQAEQELIGTMFKQLDNLIAVNQRKVELLKKLKQAYLQKMFV
complement(840803..841021)         PHAGE_Brocho_BL3_NC_015254: gp32; LOCK908_0854; phage(gi327409424)                   1.85e-05            LactobacillusrhamnosusLOCK908MFDNASKKATQYLNKQGLGDLGVGRVADEGVTFKQLSRDYQQKKIVLHSLNDKYPDRCLDPEDISIIGVVIN
841889..842155                     PHAGE_Staphy_phiRS7_NC_022914: transcription regulator; LOCK908_0855; phage(gi560185989)     6.75e-08            LactobacillusrhamnosusLOCK908MTGIEPAFTLEGARNNLHFSQKEVAEALGMSTKTYADYEKYRKVLRTDKAFEFAKLVKLPFDSIIFLPKDYETFVVGKKYLLTKGETV
842152..842415                     PHAGE_Lactob_phiAT3_NC_005893: putative antirepressor protein; LOCK908_0856; phage(gi48697283)     3.21e-41            LactobacillusrhamnosusLOCK908MNELQLFQFEDNQIRTVSSNGIIWFSAPDITNALKLTNTTVALKSLDGDEVTKFNLGGLSGETNLATEKGVTKLMTPGGKQDFVTVS
842517..843257                     PHAGE_Lactob_Lrm1_NC_011104: antirepressor; LOCK908_0857; phage(gi195661228)         8.07e-148           LactobacillusrhamnosusLOCK908MNELIIMHDRQAVTTSLKVAESFGKNHRDVLAAIRDLMSSAENYAVLKKYFIDGSYTASNGKTNPMYYMNRDGFTLLAVGFTGKRALQFKIQYIQAFNSMETQIRTGYAIPGSYAEALKLAANQAEKIEQQKQTIAIQAPKALFADAVATSHTSILIGDLAKLIRQNGVDIGQNRLFAWLRDHGYLISKGDRRNMPTQRAMDLELFDIKERTFQNPDGSVRITKTTKVTGKGQQYFINKFLQKEAV
843258..843518                     Hypothetical protein; LOCK908_0858                                                   N/A                 LactobacillusrhamnosusLOCK908MKAEQEKQSLSQVCLNLKILKAEKLASYCEKLIEQHKKGTYDDAISDLEKQRRDHRYLNGFSDDDQVFQQAIDRIIKVALSQRIAN
complement(843511..843816)         Hypothetical protein; LOCK908_0859                                                   N/A                 LactobacillusrhamnosusLOCK908MKNATLLFADGSRLELHEGEKLSGVSFSENATHPRNKDQEYEKLIYPELALEGVVLKLWSHPEVGLAESVFEVLHNYEWFRPYHESGHYYHSSAVISATFS
843891..844247                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0860; phage(gi557308020)     7.52e-57            LactobacillusrhamnosusLOCK908MELLQIVENKQISSKKYLAVDAEEQAKLIKENQELKRQLEGMEYWDLTTAASLIKGHNNTWVVNNILDVPRFRKVLEDRIVHYPPPGQKGYMFHAGPWRTFIDKWFPEISSSLREKGK
844332..844535                     Hypothetical protein; LOCK908_0861                                                   N/A                 LactobacillusrhamnosusLOCK908MNEEAIAKLVPLISYLYTQAENARLVGHNYRQGTDQTRAYAMGREDGLQTAISLINEIIGKTKTAKR
844748..844924                     hypothetical protein; LOCK908_0862                                                   N/A                 LactobacillusrhamnosusLOCK908MTDGEKIQNRLFLKDNFKKYMDILGQTSLDMIKFEADLMDVRQNIADQCFHEGGDDHE
844917..845753                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0863; phage(gi557308027)     9.02e-146           LactobacillusrhamnosusLOCK908MNETPNYYAIIPANVRYNNSIQQGAKLLYGEITALSNKTGCCWAGDQYFMGLYKVSQATIQRWLTSLEKNGYIDRTVKYKDGSKEIEKRYIRINAYPILKNENTYTQKCEYPILKNEQENNTSINNINTRANSTLESDFEKLWKLYPKKIGKKPALAAYKRAMSRKKNPATNRQIQDGIVAYRQLIKSKGTEKRFVKDGSTFFNQEAWNDYLEVVKEEREEQEARKPKFDPKKTAIAMYIDYNSLDRVLEEIKAQGIPIKPEDAKRYIAEYDERRQQA
845750..847012                     PHAGE_Lactob_PL_1_NC_022757: helicase; LOCK908_0864; phage(gi557308028)              0.0                 LactobacillusrhamnosusLOCK908MTKKLYDPSNPEPHVMYGLYTKPELIKSEWIDPKWFNSQQYAAVVAYMNKLPGDVDTLELQDGFDTAHPGVMSAADWQYIMTSDFGTSRFDWWVGKLKRDYFRSQLIKAAQAYSEEPSEDNLTAMMVASQNATAASQTVTESTIADLAADMEDKMIHGAADNGIKTYFTLNNILGGGLMPGRLLTIGARPGVGKSAFAVNLIIEALKQQPELTIDMFSLEMSNAENYNRLLACKTGISAGKFINPQKSLSDAEKVEVEKAGNVLKDYRLQLYDKQVELPQIVKTMRQRAAEAEKGYLAIVDYLGLIGVRGQPDRRLQIEEITRQFKVLTNELNIPIVLLSQLSRGVENRQDKQPVLSDLRESGSIEQDSNAIGFLWNSDRQDEKSDIRTVTLTIAKNREGALGSIDFRFFAPKLQFKVAY
847014..847358                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0865; phage(gi557308029)     2.14e-72            LactobacillusrhamnosusLOCK908MSYPTMTLKEFNEYMQEGHYQYSLFVILQLDEAVEYFKKAKQADAGMKKFWNQWAYVTLVDALETAESEYFGETSAYLPTKETDPVTRVYCQNTYDIWRGYLQKLNVSLPEQKF
847371..847658                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0866; phage(gi557308030)     3.42e-52            LactobacillusrhamnosusLOCK908MIEHENETNNAGQYWARERLRNFLDDHPSLPIYRFALIAGVSRITISSFLSGREVMMITLTKIAKAMGISLEKLKQPISEEEYKELLEESSNASN
847645..847899                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0867; phage(gi557308031)     7.65e-51            LactobacillusrhamnosusLOCK908MQAIKTKMMVGDLVMVPDRVFMGVRDLGGVARIIRIERYNARGARQDINKPVAFDNNAPKELIATVEMVDGKQRQYYLKDVKPA
847965..848261                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0868; phage(gi557308032)     4.95e-68            LactobacillusrhamnosusLOCK908MFGGAKVKKQATETVMLAVRKAMNQGVKFQWGKPLSFDWYWYDKRTDPDNIAFQHKFIFDGMQKAEFLENDNWDHIVELRDRFFIDKANPRVEVEEID
848274..848738                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0869; phage(gi557308033)     4.70e-25            LactobacillusrhamnosusLOCK908MNKKLTFTVTVLAGLMFGAGATTIADNVWQGHQNIVETKNNIDKLTAKIHASKSSLSDLQHQLSDAQAQYASLKQQYDNDMASKDAEIQQKIIEGQRAVAQKQAEVDAKQQTINDLTSQLEAAKQANNDLSQAIKDAQSIKDYSDQAVKSVNAK
848932..849438                     PHAGE_Lactob_A2_NC_004112: hypothetical protein; LOCK908_0870; phage(gi22296563)     4.76e-74            LactobacillusrhamnosusLOCK908MSEEKIYLIKNDHGEYLTVERTAPWWNSPVGTAVRNIDVALAWAEKYGGHVVTFVEEPKKVVLTKEQAEIVERAHSGKFPAASIAFYGDDDEEPLMNAYVNGYTVAKEKKYNVKVPHTKEVWYYKSGDTDLLTICPADKELRGKFTEAEIEHYGLQYCEKEEVTDDDE
849428..849604                     Hypothetical protein; LOCK908_0871                                                   N/A                 LactobacillusrhamnosusLOCK908MTNKADIDAAQKAIDAANNAINKLDLCGLYDCAWQAHDGYQRIIDYNKEQLEVTDDEQ
849594..849911                     PHAGE_Lactob_Lb338_1_NC_012530: hypothetical protein; LOCK908_0872; phage(gi226377805)     1.19e-26            LactobacillusrhamnosusLOCK908MSNETKQDVFNALMADMSHGSEQWRARYDAAFPDNLPVIPKAVGDVIVKLKHKKFSLSGTMSYAAVVSLSPWMTFEHEDTFALAWVLGVWRVEETGEIVKLEEEK
849908..850117                     PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; LOCK908_0873; phage(gi78000016)     2.69e-41            LactobacillusrhamnosusLOCK908MSKHYEEMSQLDRTDKKMKFKIVGRNGETKIKEFRSQYEADLYCERLNYERLERLGLIEHLNMTAIKFD
851425..852090                     Hypothetical protein; LOCK908_0874                                                   N/A                 LactobacillusrhamnosusLOCK908MKLPLYERIGDFVLGIFHVMKTKWDKIIPIIISIVSVAISLNTWNSYRTANEEYMQRSNQALVNSSKLAETDIDILTGKVAESDHIAVTKNQIDYQIYSLKQNLKVIEDIQITRLPQRNSMNYQVYRKDLADVIYRLNAKVTELFENKKYKQSFYLTAGDREDFMNSLAVVRRVLLDDRNALQKRNDLATKYLKFNQKFQEKNGKDLNERVSGDLNVYGGK
852733..853950                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0875; phage(gi557308044)     0.0                 LactobacillusrhamnosusLOCK908MQWTDEQIGDIRKLASEGFTRRETADKLGISYDALQGKARRLGIEFQKPAKNEYDSAKTDRNSKPVDRKVALNADGSQTVTALMRLKHEPNKDPRTLMELCGYDPDKFEMVLGDYKVYEQHSTEDGTVPQYSIHIRVKPKQGLSINEMAEAFNDKIIPVNYGMKKSGDRNLVIPLPDLHFGWTTFADLKDMVSQLREIIMDGYNEIVIEQLGDLFHSDQIHATQTVRGTQLDHANMRQAFHDAVKLFDQIIPLAIEYSNRVSIKSVFGNHSGDLEYAFLYALIDRYPQVHVDLNDSNPATDWRCAYLLGHVGIMLAHGDVAKDKLTGLFPFEYKKIFNMAKTYELHSGHYHSERFKDDRGIMWRQLGTAKPNDPYEIKNGFTTGKHLLYAFVYDDERLRCTYELN
853937..854467                     PHAGE_Lactob_PL_1_NC_022757: HNH endonuclease; LOCK908_0876; phage(gi557308045)      1.33e-126           LactobacillusrhamnosusLOCK908MNSTEVWKDIEDYKGLYQVSNLGRVRSLDRVDMRGNHLKGKVLAYNLAGAGYLQVGLHRDGKVEQKLVHRLVSEAFLPNPDNLPEVNHKDEDKTNNNVSNLEWCTRLYNMTYGTLVERMAKANGSPVYVITSSGHRYYFDSIKKASRLLGLKDTGVHACLCGRQKHHHGYTFELAV
854630..854794                     PHAGE_Lactob_Lc_Nu_NC_007501: hypothetical protein; LOCK908_0877; phage(gi78000021)     3.52e-32            LactobacillusrhamnosusLOCK908MPVQTITADADDYERFRKLGYRSMPVVTIYKADGTHDEWCDLRVDKIKQYTEMI
854798..854944                     Hypothetical protein; LOCK908_0878                                                   N/A                 LactobacillusrhamnosusLOCK908MQFPITAHTNIRAGQAIRLDRMDLAASIRATNSDDCFTGVVYLIWDHH
854997..855791                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0879; phage(gi557308049)     0.0                 LactobacillusrhamnosusLOCK908MPSKKLAFINGRPQLVDANARVRSEADRQYNRVRNEQQSDYLRFYHSNEWKQLREQILIRDNSLCQRCGLQASLVDHIVPSEDDWEDRTNADNLQALCRDCHYWKTRRETTKRKKGQHRAMKITVIVGYPASGKSTYVKRHQGQHDLVYDYYHLMTALTGLPLHQGNIDANDYVQLIYELILRKLKAEQTFDHVWLVMTYPDDKLDTLLASRDVEHILIDTDRDTCMQRLSKQGRDVSQLIKAMNKLDEMKSENKFAKFKKIKN
855992..856447                     PHAGE_Lactob_PL_1_NC_022757: terminase small subunit; LOCK908_0880; phage(gi557307994)     8.80e-107           LactobacillusrhamnosusLOCK908MAGKYKVLQMSKGDLTKERQEAKLHAELMAKDGIPKLQVTPPNHLDPVAKQEYKRIIESLGTLPLRNLDRAELENYCTWYSVYKNTSVNMKLALKNGDQDEYYAYISTLNKATANIKSLASDLGLNVNSRMQMSMPKTEAQKNDSIIDTFG
856469..858181                     PHAGE_Lactob_PL_1_NC_022757: terminase large subunit; LOCK908_0881; phage(gi557307995)     0.0                 LactobacillusrhamnosusLOCK908MSKFKDPMPNFIKRVLDGRLITSKAVNLAVKRHQEDLKRTDWRWRYDPNLAGKAVKFMEILPEPKSGKPQPLAPFQKFIIGSIYGWVDKDDPNIRRFTDVFISMARKNGKSLLISGVILYEFLFGKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDGSTIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIETLASGQVLLPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEETAERYFAFIAEQDNVQEVDDPNSWIKSNPLLDVDIVHDQITDYLTTKLSQARADGSLNAKLVKNFNIWRQATEDSYLDFDAWKDAELSEKPDIRGKRAWIGIDVGRTSDLFAITWLIPQEGWWWLDGYAFVASKGGIDNKIKTDRIDYLAAEQHSEGEISSLESGIIDNDRVYEWLEDFIERNDLDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAVLMSDNNGVRINKNKYANKIDMIDATLDAYAIAFKEDLDNYLDDERVFSDDFGF
858193..858384                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0882; phage(gi557307996)     8.88e-36            LactobacillusrhamnosusLOCK908MNGKLANFFRILGANMAGIATVLGFILAGYGAFLINRPTGFMVCGGLLFVLAFILLLPDNEGR
858389..859642                     PHAGE_Lactob_PL_1_NC_022757: portal protein; LOCK908_0883; phage(gi557307997)        0.0                 LactobacillusrhamnosusLOCK908MKLFRGLATEADPHWADNLLDSGVIPSFRGAYLGISALRNSDVLTAVSIVAGDVSRFPLVITDSSTDEVIDLSDIDYLMNTKVNKRLSAYQWKFSMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPENLVYRFTPYNASVQKVCSFEDVIHWKFFSYDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRLSAEARQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQNSPNQSVKQLADDYIRNDLPFYFEPITSEFELKLLDDNQRHQYRIGFDTKSVNGLPIADVNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQSTLNTVFLDQKEAYQAEHASQLKGGDANDKGAANDSDTHANS
859614..860225                     PHAGE_Lactob_PL_1_NC_022757: capsid maturation protease; LOCK908_0884; phage(gi557307998)     1.76e-122           LactobacillusrhamnosusLOCK908MTATPMQIRDGDEKHPTVIEGYALKFDRKSEIMGGGEFSFREHIDRHALDNADMSNVVALFNHDQNQVLGRTGVNLELTIDDTGLKYTLTPPDTQLGRDLLENVRQGIISQSSFAFTIAPDKDAQKWQKSSERGVKYERTINNIDHLFDVSPVTTPAYPDTEVKVGARSLEQIKALDQPPEWELKRRKMLYQLNKEELLKGIE
860267..861469                     PHAGE_Lactob_PL_1_NC_022757: major capsid L; LOCK908_0885; phage(gi557308050)        0.0                 LactobacillusrhamnosusLOCK908MTLDEKLAAVKKQLDEKRSALPAMKTELRSLLEGEDSEENLKKAEGVRAKYDKAGKEIKDLEEKRDLYEAALKGNEQPSGKKPNHPEEHSYRDALNAYLHTRGRNTDGVNFEKTEAGEFAIFRADPTDASDAVNAGVKAADAAVTIPETISNTPQRELQTVVDLKPFTNVFQASTQKGTYPTVANATTKMATVAELEKNPAMAKPDFKSIDWSVETYRQALPVSQESIDDSAIDLVGLIAQNAQQIKVNTTNSAVATLLKGFTAKTISSIDDLKHINNVDLDPAYSRAIIASQSFYNFLDTVKDGNGRYLLQDSILTPSGKSVLGMPIVVVSDDTLGAAGEAHAFLGDIKRAILFANRADFMVRWTDDQIHGQYLQAGMRFGVSVADEKAGYFLTYTPKA
861487..861726                     PHAGE_Lactob_PL_1_NC_022757: major capsid L; LOCK908_0886; phage(gi557308050)        7.53e-42            LactobacillusrhamnosusLOCK908MSQKTFTGGVGATKDITVTVTPDGAPQAVEAVSSDESVATVVKKSDGIYTITNLAAGTATITFSTNGISSTLAVTVNAG
861737..862096                     PHAGE_Lactob_PL_1_NC_022757: head tail joining protein; LOCK908_0887; phage(gi557308000)     1.58e-81            LactobacillusrhamnosusLOCK908MADTTLDKSPLTDEQFQVLKMYLKVDQTIEDPMIMQLVHDACGEISSAISFGSKPEQFLSNPETRDRFFTALMKQVKEDYDYRGMGAEVMRFPLQTSTTNIINQLRSELPEEDGDPDAN
862086..862415                     PHAGE_Lactob_PL_1_NC_022757: head tail joining protein; LOCK908_0888; phage(gi557308001)     4.84e-70            LactobacillusrhamnosusLOCK908MRTNRMTERIAFVSYESKKVNGVPVDGVLVKHMTVWAEVPKVPIREANDPQTKLGTRKDSPTFLVRFLTAEEIQPTWRIQWRGNEYQITGLDPDYERRDLTTITAKAVS
862415..862801                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0889; phage(gi557308002)     5.87e-88            LactobacillusrhamnosusLOCK908MGVKVTGDAELLANLNKLQFGVAKEARAAVRDGAQKFADKLKSNTPEWDGETDMSGHLRDDIKLSSVRETSGVTEVDVGYGKNTGWRAHFPNSGTSMQDPQHFIEETQEVMRPVVIAAFLSHLKEGGM
863017..863187                     PHAGE_Lactob_PL_1_NC_022757: hypothetical protein; LOCK908_0890; phage(gi557308003)     4.46e-34            LactobacillusrhamnosusLOCK908MDKTDWDQQEKIETQIYQALHAAGWERYYRNSYVDGDTPALRMTTGYFQFQGLPIG
863221..863835                     PHAGE_Lactob_PL_1_NC_022757: major tail protein; LOCK908_0891; phage(gi557308004)     4.10e-141           LactobacillusrhamnosusLOCK908MADTAVTTNKKLAKFGASAFEYGVVGDDDFVPSTRKIQGLSSVKLDIKTEQKTLSADDGPYLILSGGITEATETIEMYDVDSQMKSDLFGINVVNGVEVYPKNLSPNYAATLFRTKLSNGKYVWVGMLKGMFSLPGVDTKTVDGTPDPSADSIEGSFIPRGDQDTGNVVLIGREDNDGFNFDTFHSYVFPKTAEDATITPATPA
863938..864351                     PHAGE_Lactob_PL_1_NC_022757: tail assembly chaperone; LOCK908_0892; phage(gi557308005)     4.94e-95            LactobacillusrhamnosusLOCK908MAYQIKLNIKGETCVFTRNGEPTLRDTTNALKVQQQQLRMLNRKDGPSNDDYDENEKNLAKFAVDFWKNQFTTDDVIDGSSISLKSLDSINDAIGDSLSDGEEDKKDTAKKSPKRTSKKPLATLTTSTKQGSLKATD
864474..869366                     PHAGE_Lactob_PL_1_NC_022757: tape measure; LOCK908_0893; phage(gi557308006)          0.0                 LactobacillusrhamnosusLOCK908MLGNLGQIAATVSLNIDPFQVSQRVLNSSIKATAAELRAQDAAFKGSEKSINNMRSTYDTLSRQSKNYQAQLQKQRERYDENSKAVERLNKSETASQEEINRATKLQANAASQYNRTAAAAAQNENRMAALRKEIALQSDGWTKVSNGASKFASVTEKTSSKLTSFGSTMTRAVTAPIAIGFVAAAKSAIDFNSQIQAMGPLLTNGGAITAKYRAQLDQLASASKKWSVEYGISTAAINDGMSEMIKRGYTAAQTLGAMPAVLNAAKASGDDFNDVMHVSTSVLEQFGLKTESTTGMLKNTSRVTDALTYIANATAAGFQDMGEAMTYVGPSAHAAGISLEETAAAIGIMSNKGIEGSVAGTALRGALTRLLKPSKQNIEGFSELGISVADFKKGTLTLPEILDKIKNNTKGWTDQQRASAVALAFGTEAQAGMNALISAGGGELRKYTSEAEHASGTTAKIANQLNNTDAAKLKRFQESIHVLGIEVGQKLLPTLTPLIKTATDVVNAFSKMDSGTQQTIIKFAAFAAVVGPVSSLIGGALKPVVALSKGISGIAGVIGRASAAAKIGGTAMDVLKSGFSKTAFEALKVAPAAAAVADGASGMGAAMGGAAASGTGLLAALGPIVPVVLGVTAVVGAGVAIWELWGKKALESADRTSRWGTDIGADADRSASKMKDASGEISGAFDDTNHTVTQNAKTISKGFNDLTKAAKEAADQSETAAKKLAKSLGGEAADNIEKQAAKEKAANAKRIKEMESNNKKAQAITASFNKSGAQMTADQYQLLDNYRRKNAALAVKTLQISGSQQNNVLKAVLGERTRMSKSAALEQYQDMWNAANKENSAYKSQQAKINEEFKNDATMRHVALEGLERDHQNKMKSLYAGAIQAMKAQGTSRSEMLAELQTDFHLTASQAESAMNSYENAMAKGVKSNRDFAAATEGFGKAAQQAGDHWNNLVFDTKTGKVKTNLPEVLKDTASTKKGWKQLVFDLKYAKITSNAKQMIVEALASSEQWQKLSVPEKNAIIRTQGREQLADIMDKFVSWNSLSLKDQQAIVKGDYTPLVNALVKSGDWNNLTLKQQEAIVKDKATVPLVSSLQQTGEWQKLDLKVQEAIVNAKGKKDLEDIIFDMGVWNKLPNTQKYATLVSFGKQDIADIIDQLNLWNTLTPKEIKAVAKGDTSSLIAAIDKANDWNRLTLGQLEAIVKDKASAGLVQAMIKAGEWNGLSIEEKTAIMQTKGKSDLADMVVKYGLWNSLPNSTKSLLMNDSDARTKLEKAGVAIDQYNLFKNPNEKGLKANNTDVLGKTEEAKGSIQKYNEVLPGLKLFPADASKVKHESSSGGTSIAKYNEVLPGLKLFPGDSSSVTNHAEKGKEEIGSFNATNPLMRFFQGNSGSVDGASKSGKSSITSFNSKVPIMMFFNGNADGVSSASQIGVNAVAAFGGNATITKTFRISADIDPAVQRLLNSGKFARGTQNFTGGLATINDASGTRYQEVVTLPNGAKFVAYGRNVTLPLPRHTKIETAMQSARNYSIPRFAGGTTDFGGAANRINQLNPQTFAARTPSTVNVSGITNNMTLSDQTIERLGKALASNVKPDNDRPIYLIVDGKVLGQVVGPMLNNANGKAIQLQTRGVTS
869366..870079                     PHAGE_Lactob_Lj928_NC_005354: hypothetical protein; LOCK908_0894; phage(gi41179329)     1.64e-19            LactobacillusrhamnosusLOCK908MPFHDFTYLGKRPSDFGAYIHVVSHDIGFPSKIKTIVSVPFSNQSYDFSTIGGVQPYNERKVTYVINVVNKYGYDQVSMHELKTEIANWLYSSNSKAELYDDKLPDYHFLAELQEAADLKDDVRSGELTVVFTCYPFMIANKFEGDDDWDTFDFNNDVAQDVDFEINGSRSFELINNSVTIVTPQITTNAALTVRIGQIEYQLPQGTSQDIPLEVGTNTITVTGSGKISFAWHREVI
870081..871553                     PHAGE_Clostr_phi8074_B1_NC_019924: putative phage tail protein; LOCK908_0895; phage(gi431810378)     9.36e-20            LactobacillusrhamnosusLOCK908MYQVTIINNDKSIVIMRPGGSRTMLTSAEIKTDINSIPSFTFSVLPNNPGYNEIMPMVTRVRVVRIDTGEVLFDGRVLVPTNEMAETGALARSYTCEGALAFFHDVVPGYQTFTGTPATIIKQLVDMFNSRVDPFKQMQLGIMPESTQSQTLETTPEKDLYDTLHDFVVTTLGYDIRVRSAQNGRFLDVKSQLGETGKTIIRLGINLKAMKVETDPTGIITRVVPLGAVKDNVSSEESVQPRVNLTDAGKSLYVDIPDLINKYGVLEGVQVFDNAKTPEQLQEAVNSWISGQRPVTRKFSVTALDLSLLRRAPEDFKVYNFNRVINPLTQTDETMRIVGQTLDLIQPQNAELVIGDKFKSGVDYAVDTVAKNLNNQRLYGQIQKTVLGQSARIELVNTNAQDALKAAQEAQQTVDKIQTEFSDADINGIKNSLTDISDKLNSITENIGAIGKDVDQLKKAQTTSTGATLATIEERVKKLEDAAKPAEGSK
871553..874666                     PHAGE_Bacill_G_NC_023719: gp353; LOCK908_0896; phage(gi593777809)                    1.55e-12            LactobacillusrhamnosusLOCK908MVDKQEPYRDPEHIPYENSIREDINNGFVDNISESLATWIRSKQWGLDVRESLALAVEWFSKMKNETPRGTYPTFDDLKKAFPNGDGGKSIYAVLDSQRWYYYKNGAWQDGGVYQIPAIDAAKMDQIGQYLDNLSRNNLVPNAKFQNGLINNAVPSVAGVLLSVSHREGTTWVTVQSPSGTVNNQGVGIVVPRLNSIGQPVIGTGSYRLGVRIVSAVDQNLKITLIPRKANGDWLPSFDFGTFNAHAQKIMAVRNSAHIDVTGQEDNFLIMVWNTDGQPVSFSATDYSLVKEDEVSNNSDLESGYIEAANRDNVFRNSFFTEGTTPWQKGGTDVDFRNELYADKKWLHVWTGGHTGQSVSYLGADGTKLVNGVRNTGVRGSLIIKFNAASVIDIHAIFRDVNGAVLDDVIVNTVKSRDLAVPTKVNFFIPRIGRPDLSTVLITFKDHYSAAFDFNVTEIVGYPIAFEKPDRLSMNVVDDPTLKTGSAYFRTSNGGAYSPVMLLNHRWIKYSCPAASKQPTSRLEYLFNNEETTNDDFRTHNVLVECDVLVDTTGIYTVNATSYDLNNAKVRDYVITALPLTAGVINHIDFILPRFQPDEFNYGFGLCSTSTGDLSYSVSNINIRADVGIDNQGEHAFTSGTNLPVIKIDGTLPTQKGDKTTVTVRILKNGIAKNYFAKLSIQGDSSATYDKKNYKLKLYSDPDCTVKAKFKAAPSWLNEGTIVLKANWIDVTHALNIVSAKLFAEITENRANVNSNLLNASMLGEIQGTPALLYTNSSFHGLYTINTGKDENLFGFDNVPSNAGVLEAQNHFTDKGFGKPTIVITDDITANPDADMEVQVGTTTPEFQAATNRLAQFVSQSDDATFHDQFSQYLDLEAVIDFLIFYQVAECSDSYIKNIEYTTYDGNIWLPIPYDLDSTWGLNWDGKTIFDPEMDMLNTGLTSKNFANFKLNMLMNRTLKAFKPEIKARYTQLRTSVLTPDKVTSMFEEFMDSVGTNAYAKELSRWPNIPSTFFDFKTLRKNVITRFRISDYIFKNL
874808..875101                     PHAGE_Lactob_Lrm1_NC_011104: hypothetical protein; LOCK908_0897; phage(gi195661217)     2.44e-60            LactobacillusrhamnosusLOCK908MTFFGYTIGDWAEVISIIGVGVSAGSWLFKKIALDPLRSDIQVLSETINRQLKLHEQSLADLGQHLRTHDDELGSHSVRITRLEDHVGIKGEDNHED
875091..875504                     PHAGE_Lactob_A2_NC_004112: holin; LOCK908_0898; phage(gi22296539)                    4.16e-80            LactobacillusrhamnosusLOCK908MKINWKVRVLSVKFWLAVVPASLLVIQTVAAVFGYNWDFASLGKELTAVVNAVFALLTIVGVAVDPTTEGVSDSQQALAYPALITTKAAKIKALEDQIKALQADKEADQVTAASEVVPETSSAAPAESAPASFAPQQ
875803..876987                     PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; LOCK908_0899; phage(gi100023)     0.0                 LactobacillusrhamnosusLOCK908MKLKTKLITLVVAFLAAISFALPSQANAAKGDQGPDWSKYQGASGRYGTGQDKFIIAQIGGTYGGTYIDQWTYDSQIASAKAAGKRVHSYIWYGVGGSSQLGLEALDRYMPRIKAQTPKGSIVALDYEDGASGNMAANTDAILAGMRRIHSEGYTPMYYSYKPYTLAHVDYQRILKEFPNSLWIAAYRDYLPTTKPDYGYFPSMDGVAIWQYTSAFGLSQGLDGNIDLLGVTDNGYSKQPATPSVPVTPVPSQPAKSNAASDTDYAQAGVFKPSTTVNIRTGAGTGYASVGSYAPGESVIYDHVYIRGTYVWARYLSYSGRYRYVALGVNGGESYGSRSSGYTSLVSHTYYTVRYGDSFWSIARKYGISMYTLAANNGKSIYSLIYPGESLYIR
880317..880333                     attR                                                                                 N/A                 CCCTTACTCTCCGTTTT

#### region 2 ####
1046847..1046859                   attL                                                                                 N/A                 TGGAGGTGAGGAG
complement(1046929..1048077)       PHAGE_Lactob_Lj928_NC_005354: putative integrase; LOCK908_1078; phage(gi41179288)     8.38e-35            LactobacillusrhamnosusLOCK908MAIKKVKLKSGAVRYRVTVNAGLVAGKRKNIVRNVQSMQKARLLESKLKLDVANGLYDEEDTTPPVHTFSDLYNQWWPIYVQTVEGSTAYKTKQLFHNHLIPMFGSKTLTAIKTGSIQSAVSQWRETTTKAYKERFIYLKKILSFAVKMQYIEKNPADGVELPRGVRSGKSPVYWDNKQVARFLTCIDPNNDPEKYTMFLLMVSTGIRREELCALNVSDVNFKTSTLSINKAYATGLNGKESIKGTKSTAGMRTIPLTPKVTIQLKKWIALLDTSKIISIRDDRPLFPSPQHFEKRLGINRPNKWLKDIIEANHLTPRITLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYAGMNQSDAREGIEKLADYMEQVTF
complement(1048185..1048844)       PHAGE_Lactoc_lato_NC_004746: hypothetical protein; LOCK908_1079; phage(gi30089869)     1.18e-12            LactobacillusrhamnosusLOCK908MLQNRLNVLIAQKGYSIKKVHDDTGLSRTTISNLVNNVGGGIQSVTLNRLCLYFGITPADFFDFVPFDLSYDAVADKLSALNIVSESDDPGGSFFNLIISADNGQLSVNKYYFRVGVFFFNKGLSDPQDYKVPYSAYVYVAGWSQDKHQEEALQFKRMYFDKMPAAFQEQFYTSCTQHIVEYVSLSLAPKRLIFEADSDYKMIVNLPYGRTVEASIIPK
1049013..1049282                   Hypothetical protein; LOCK908_1080                                                   N/A                 LactobacillusrhamnosusLOCK908MKAELVLSEDFDKQLQDRIHQEVIQAVSKLAPQHDEPKKLNIGQAAVYAGVARNTLLSWTRKGLPMQVVGGVKRINTADIDDYMNNHGK
1049350..1049571                   hypothetical protein; LOCK908_1081                                                   N/A                 LactobacillusrhamnosusLOCK908MNLFSKEEIALDHELGNLIDDIQLNVHGIAEDSTVTVDGKYIPNSELAVTTAKELLRVSEILKMYENEDDADD
1049682..1049873                   hypothetical protein; LOCK908_1082                                                   N/A                 LactobacillusrhamnosusLOCK908MAQRVSTKFGWQWHDYVQADADCDRYWAAKKAEKRSLIEATKKSSRAATQGEKKTSEKIYIDF
1049918..1050193                   Hypothetical protein; LOCK908_1083                                                   N/A                 LactobacillusrhamnosusLOCK908MIKNVSNSTKAPDLGMASYNLSTAKGLLEALSDEFDTMEGSVISYRNDRNEKNAAILAYGTNRSFYTWMALLRTIQEYVDSSLATIDEVNK
1050190..1050378                   hypothetical protein; LOCK908_1084                                                   N/A                 LactobacillusrhamnosusLOCK908MMKEDYYTTAQALLSDTSAMVNILRHQINDEQQSALADTVADMIIDARRLLMEGDAADGRRA
1050353..1051189                   PHAGE_Lactob_LfeSau_NC_029068: DNA primase; LOCK908_1085; phage(gi985757763)         1.01e-25            LactobacillusrhamnosusLOCK908MLPMVDVLKVALGYQQHGFSVYPLAPETRTPLTGSHGYKDATKDPEQAKKWWGEHPNYNIGLGLDGVLVFDIDMGHKSEANGNESLAKLSAEGRADQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDLFSKNGEKTGLDYVATGVPVFPSIRENGMYQPLKGHKITKLAPAPKWLLDEIQRVSHPNLGFGGSTVYRGKRWTGKLLDEIVNGASTGNRNDFLTKIAGKMFFTGAEPQTVYNLLFTTNDNYLDTPLAEAEVNKIFKSVLKAEERRRAVG
1051182..1052606                   PHAGE_Staphy_StauST398_2_NC_021323: virulence-associated protein E; LOCK908_1086; phage(gi509139907)     1.26e-74            LactobacillusrhamnosusLOCK908MVKTMPEDIKQEAKKVVNVDFTGQEQWRNDLKLDGNGGIRKDSVVNIQLLLENDPTFANVVAWDDFSEMLIKTKGVKGLPIRKGFWTDEDDAVVRSYMERKHNLLFSKQNEQDAMVVVGKEHSINPVKDWIEAEQWDGTPRAERYFIDYLGAEDSEYTRAVTRKWLAGAVKRVYQPGCKFELVPILEGKQGLGKSTAARNLFPKKFSDSLKSMGKTDEDYKKLQGNWIMELGELSAMKKTEIESAKSFISAQSDSYRGSYSHYVYPHLRKCVFIGSTNQQDYLKDATGERRFFPIRCGVTKPTKTVWRNEESVPKINHDIHQILAEVKTWVDAGESVFADDKLMQLAKPYQQEAETVDPMKEAIEDFLNMKVPSNWENLSLSLKASFFHTHIDHNGDVATWLQQHLDAGELQPLQQTTTREIMEVVFDKSVDRYLMGRTNSDAKRIKLIMDNMEGWQAQRLRVNGNRPHGYVRT
complement(1053432..1053545)       Hypothetical protein; LOCK908_1087                                                   N/A                 LactobacillusrhamnosusLOCK908MLPTISCFDWLNMINKHSLTNNPTFQTASTSWIAQPE
1053793..1054263                   PHAGE_Staphy_phiPV83_NC_002486: phi PVL ORF 1 homologue; LOCK908_1088; phage(gi9635714)     4.93e-22            LactobacillusrhamnosusLOCK908MGAPLKSVTNLSAHLSKKQLADRVASEKALFTYKELQVQPPTWLDDYAVTEWHRIVPLLKKDIPVSELDAALIASHCQAYSDIQKAAELIQKQGMMVETTDSVKANPAVKMKLDATNQMMRIDEVLGLSVYSRAKLALKSETKKKPDDPFAELVSS
1054260..1055963                   PHAGE_Lactob_LF1_NC_019486: bacteriophage terminase large subunit; LOCK908_1089; phage(gi418489385)     6.56e-138           LactobacillusrhamnosusLOCK908MNYATEYTDKVLSGEIVAGKKIKQAARRYRRDLKASKRKKNPWPYYFDEDFANKAVEFIELMPARDGSPLKLELFQKYLISELFGWRDKETGNRRYDRAYISMARKNGKSFLTADLGALYLLMENKPAMNREIVYTANSNAQAHLAFDMLSSGLRQVSKMSKSVRDRLKINRNEIIDLPSNSRAVPLASDLHSLDGYQSDLAIIDEFALARTDEILRTLKSGQINSDNSLLAVISTTGPDLNGPMYKEYKFVSKVLTGREQADRYFIAIFEQDSKDEAFVPETWEKSNPLLANTERAKTMRPSLQADVDLAAKQGTLRPILVKNFNMWQSARADSYISLDDWEKAIIEPPDTMGKDVYIGLDLSKSSDLTSISWLVPEDGYLYADSHSFVGTKYGLEEKIKRDGFDYISGASRGECSITKLDSGMIDYDEVLRFILDMIERNQWNVRAICYDPFAMGYLIPEFEKRDLPLLEVRQGVRTLSIPTTRFRDDLFNGQLKHPDNQLLAYAVNNAILKYDANNNPIIDKAHNATKIDPVAALMNAYTIAMDQNKESEVADNDFYSSDDFSF
1055929..1056108                   Hypothetical protein; LOCK908_1090                                                   N/A                 LactobacillusrhamnosusLOCK908MTFIRAMTLVFNVQTVLLLLGLICMVVGIWWLFGFGVGMLAVGTTLISVAVIINFNKGR
1056113..1057297                   PHAGE_Staphy_StB20_like_NC_028821: portal protein; LOCK908_1091; phage(gi971746491)     1.86e-72            LactobacillusrhamnosusLOCK908MSFFTNSATQPRDDNSDPFLDALVSMTSNDSGLYVGIGALRNSDVFTAVRVIASDLATNPIEYSDKRISVLLNKAPNDHMTAWAFKFALAANMLLNGNSFARVTKNPSGQVTGFELVPNSQMVVKQDDTTGIISYEYTPDSGRSQRLNASEVLHFKCFTQDGYKGISPLYSLHDEVGVQKSGHALLKGFFNTGVQGTGILKVNKTQLDSKAKENIRNKFEAANSGDNALKTIILDNDMDYKQLEVNTDVLNLVNSSDWTTKQIAKAFGLPLDRLGIESEHSNAVQSNVMYLQNTLIQYFTCFTSEMDAKLSTGDNRYSFNTDKLFSADPATMQELAVKGLQGGVLTTNEARAKLNLPPITGGDEIMASLNYTPLSNLTNYQNTRQRSDPENESR
1057284..1058828                   PHAGE_Entero_IME_EFm1_NC_024356: capsid protein; LOCK908_1092; phage(gi658310465)     2.52e-49            LactobacillusrhamnosusLOCK908MNQDDVEKRLNPNAGLTAKADDSKGQDDPDTQQQKDTTSSPKKLSGYAVVFNSPSKDLGGFKEVVDPHAFDDVDLSDVYMVSNHDFSQVLASTKAGTLTLNVDDKGLQFEATLPDTTTANDAYNNVQAGNLSAMSFTFNAAPDGDTFTKDDSGQVIRTIKQVKSLFDVSLVAIPAYDDTNVQVDKRSYTEWLKTNTEQPEKGDKTMTEKTIIDNKEHTESRAYEDYIRSMGEQRDGITTTTAGAVVPKEVINDVFDLKESDYDLAKYVTVKQVGTPVGTYPIALTNNGVLATKAELADIPDIDSNLFRGVDYKVASRAGKIYLSNELVEDSEVDIVAEVKNQLKKLVQNTDNSNIISVLTGKTGTNDNFKHITGTGLDDLKKTFNIELDPALSLSVIVNQDAFNYLDTLKDSEGRYLLQPSITAPSGKQLFGAPVIVIANKVLPTDKAGTYRIIIGDFAQAIFLAQKNEVNTQWERFDSYSQGLAVVIRNDYEVVDPDAARIVDITPVAATPAA
1058884..1059174                   PHAGE_Entero_EFAP_1_NC_012419: head-tail joining protein; LOCK908_1093; phage(gi225626391)     4.30e-12            LactobacillusrhamnosusLOCK908MSVTTEDLKRALRISHNEDDAMLSAYLLTAKQFVISAVDQTLTDENFGDDPRFDFAVSLLAQHWYINRGVDGATYVPDSVVSMIQQLRGVDYATGK
1059284..1059499                   PHAGE_Entero_EFAP_1_NC_012419: head-tail adaptor protein; LOCK908_1094; phage(gi225626390)     8.75e-11            LactobacillusrhamnosusLOCK908MLSQYLSEVKASVGTKLEDTVTFVIRYDQPETILNSWCIEWQGKQYDIVKLTPDTAKKQWTTIIGKPVANK
1061341..1061353                   attR                                                                                 N/A                 TGGAGGTGAGGAG
