Submission Results

Sequence Name: Listeria monocytogenes serotype 4b str. H7858 strain 4b H7858,

GenBank Accession Number: AADR00000000.1

GenInfo (GI) Number: 47020243

Download Results: AADR00000000.1.PHASTER.zip

gi|47020243|ref|AADR00000000.1| Listeria monocytogenes serotype 4b str. H7858 strain 4b H7858 .2972254, gc%: 37.95%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
122.9Kbincomplete5026825915-848890 info_outlinePHAGE_Lister_A11838.51%Show info_outline
243.5Kbquestionable7567985338-1028879 info_outlinePHAGE_Lister_A00635.29%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|47020243|ref|AADR00000000.1| Listeria monocytogenes serotype 4b str. H7858 strain 4b H7858 [asmbl_id: NC_000000].2972254, gc%: 37.95%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 26 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(825915..827696)PHAGE_Bacill_SPBc2: ABC transporter; LMOh7858_0132; phage(gi9630145)4e-35Showinfo_outline
2complement(827689..829431)PHAGE_Bacill_SPBc2: ABC transporter; LMOh7858_0133; phage(gi9630145)2e-30Showinfo_outline
3829574..830407transcriptional regulator, AraC family; LMOh7858_01340.0Showinfo_outline
4830442..831557PHAGE_Acanth_moumouvirus: putative triacylglycerol lipase; LMOh7858_0135; phage(gi441432487)4e-20Showinfo_outline
5831664..832371EAL domain protein; LMOh7858_01360.0Showinfo_outline
6complement(832341..833036)conserved hypothetical protein; LMOh7858_01370.0Showinfo_outline
7complement(833255..833650)PHAGE_Lister_A118: gp35; LMOh7858_0138; phage(gi16798818)4e-29Showinfo_outline
8complement(833713..834048)PHAGE_Staphy_92: ORF019; LMOh7858_0139; phage(gi66396425)4e-15Showinfo_outline
9834265..834693PHAGE_Lister_A118: gp61; LMOh7858_0140; phage(gi16798848)3e-16Showinfo_outline
10834705..835121PHAGE_Lister_A118: gp66; LMOh7858_0141; phage(gi16798853)3e-22Showinfo_outline
11835419..835790antigen B; LMOh7858_01420.0Showinfo_outline
12835803..836315PHAGE_Clostr_phi8074_B1: putative phage major tail protein; LMOh7858_0143; phage(gi431810369)5e-19Showinfo_outline
13836363..836665PHAGE_Strept_5: hypothetical protein SpyM3_1315; LMOh7858_0144; phage(gi28876397)9e-08Showinfo_outline
14836719..837111PHAGE_Strept_5: hypothetical protein SpyM3_1314; LMOh7858_0145; phage(gi28876396)4e-24Showinfo_outline
15837098..838966PHAGE_Propio_ATCC29399B_C: putative tape measure; LMOh7858_0146; phage(gi410507479)3e-48Showinfo_outline
16838963..839781PHAGE_Lister_A118: gp17; LMOh7858_0147; phage(gi16798800)1e-44Showinfo_outline
17839791..840927PHAGE_Lister_A118: gp18; LMOh7858_0148; phage(gi16798801)2e-47Showinfo_outline
18840917..841216PHAGE_Deep_s_D6E: tail fiber protein; LMOh7858_0149; phage(gi423262345)5e-05Showinfo_outline
19841231..841806conserved hypothetical protein; LMOh7858_01500.0Showinfo_outline
20841821..842300PHAGE_Deep_s_D6E: tail fiber protein; LMOh7858_0151; phage(gi423262345)3e-06Showinfo_outline
21842297..842833PHAGE_Lister_A118: gp20; LMOh7858_0152; phage(gi16798803)6e-05Showinfo_outline
22842852..843274PHAGE_Bacill_WBeta: phage holin; LMOh7858_0153; phage(gi85701395)4e-32Showinfo_outline
23843255..843983PHAGE_Bacill_SPP1: hypothetical protein SPP1p051; LMOh7858_0154; phage(gi22855096)5e-37Showinfo_outline
24complement(844021..846369)PROPHAGE_Pseudo_PAO1: coat protein A of bacteriophage Pf1; LMOh7858_0155; phage(gi15595921)2e-07Showinfo_outline
25846563..847312EAL domain protein; LMOh7858_01560.0Showinfo_outline
26complement(847382..848890)PHAGE_Staphy_42E: ORF012; LMOh7858_0157; phage(gi66395520)3e-18Showinfo_outline

Region 2, total 69 CDS

#CDS PositionBLAST HitE-ValueSequence
1985338..985694PHAGE_Clostr_PhiS63: gp36; LMOh7858_2477; phage(gi388570662)4e-07Showinfo_outline
2985979..985990attL0.0Showinfo_outline
3complement(986216..987574)PHAGE_Lister_A118: putative integrase; LMOh7858_2475; phage(gi16798814)0.0Showinfo_outline
4complement(987651..988538)PHAGE_Lactob_A2: hypothetical protein A2p19; LMOh7858_2474; phage(gi22296541)5e-71Showinfo_outline
5complement(988762..989469)lipoprotein, putative; LMOh7858_24730.0Showinfo_outline
6complement(989531..990220)PHAGE_Lister_A006: gp15; LMOh7858_2472; phage(gi157325429)8e-18Showinfo_outline
7complement(990151..990369)PHAGE_Lister_A118: gp34; LMOh7858_2471; phage(gi16798817)7e-37Showinfo_outline
8complement(990392..990883)PHAGE_Lister_A006: gp30; LMOh7858_2470; phage(gi157325446)6e-92Showinfo_outline
9complement(990914..991222)PHAGE_Lister_A006: gp31; LMOh7858_2469; phage(gi157325447)8e-52Showinfo_outline
10991371..991640PHAGE_Lister_A006: gp32; LMOh7858_2468; phage(gi157325448)5e-36Showinfo_outline
11991645..991830hypothetical protein; LMOh7858_24670.0Showinfo_outline
12complement(991790..992071)hypothetical protein; LMOh7858_24660.0Showinfo_outline
13complement(992068..992301)transcriptional regulator, Cro/CI family, putative; LMOh7858_24650.0Showinfo_outline
14992412..992666PHAGE_Thermo_THSA_485A: transcriptional regulator, XRE family; LMOh7858_2464; phage(gi397912657)5e-08Showinfo_outline
15992670..992846PHAGE_Lister_A118: gp38; LMOh7858_2463; phage(gi16798823)1e-26Showinfo_outline
16992863..993165hypothetical protein; LMOh7858_24620.0Showinfo_outline
17993162..993335hypothetical protein; LMOh7858_24610.0Showinfo_outline
18993339..993533conserved hypothetical protein; LMOh7858_24600.0Showinfo_outline
19993545..993826PHAGE_Lister_A006: gp34; LMOh7858_2459; phage(gi157325450)2e-36Showinfo_outline
20993858..994025hypothetical protein; LMOh7858_24580.0Showinfo_outline
21complement(994026..994229)PHAGE_Strept_4: hypothetical protein SpyM3_1259; LMOh7858_2457; phage(gi28876373)7e-18Showinfo_outline
22994293..994520PHAGE_Lister_A500: gp37; LMOh7858_2456; phage(gi157324996)3e-14Showinfo_outline
23994475..995071PHAGE_Lister_A500: gp37; LMOh7858_2455; phage(gi157324996)7e-104Showinfo_outline
24995193..995726PHAGE_Lister_A006: gp37; LMOh7858_2454; phage(gi157325453)7e-79Showinfo_outline
25995723..995938PHAGE_Lister_A118: gp44; LMOh7858_2453; phage(gi16798831)4e-30Showinfo_outline
26996046..996234PHAGE_Lister_A006: gp39; LMOh7858_2452; phage(gi157325455)2e-22Showinfo_outline
27996467..997426PHAGE_Lister_A006: gp41; LMOh7858_2451; phage(gi157325458)0.0Showinfo_outline
28997429..998244PHAGE_Lister_A006: gp42; LMOh7858_2450; phage(gi157325459)9e-152Showinfo_outline
29998274..999188PHAGE_Lactob_Lrm1: DNA replication protein; LMOh7858_2449; phage(gi195661236)4e-39Showinfo_outline
30999185..999457PHAGE_Lister_2389: Gp32 protein; LMOh7858_2448; phage(gi17488537)1e-35Showinfo_outline
31999454..1000014PHAGE_Lister_A006: gp45; LMOh7858_2447; phage(gi157325462)5e-41Showinfo_outline
321000011..1000217hypothetical protein; LMOh7858_24460.0Showinfo_outline
331000204..1000587PHAGE_Entero_phiFL2A: YopX superfamily protein; LMOh7858_2445; phage(gi281416516)2e-21Showinfo_outline
341000591..1000779PHAGE_Brocho_NF5: gp40; LMOh7858_2444; phage(gi327197625)2e-10Showinfo_outline
351000997..1001398PHAGE_Lister_A006: gp52; LMOh7858_2443; phage(gi157325470)3e-48Showinfo_outline
361001395..1001874PHAGE_Lister_A006: gp53; LMOh7858_2442; phage(gi157325471)1e-82Showinfo_outline
371001894..1002199PHAGE_Lister_A006: gp54; LMOh7858_2441; phage(gi157325472)4e-30Showinfo_outline
381002302..1002706PHAGE_Lister_A006: gp56; LMOh7858_2440; phage(gi157325474)1e-67Showinfo_outline
391002826..1003002hypothetical gene lin2398 -related protein; LMOh7858_24390.0Showinfo_outline
401003090..1003662PHAGE_Staphy_SpaA1: sigma70, RNA polymerase sigma factor, positive control factor Xpf (C-terminal region); LMOh7858_2438; phage(gi399498918)4e-11Showinfo_outline
411003923..1004150PHAGE_Lister_A006: gp62; LMOh7858_2437; phage(gi157325481)1e-33Showinfo_outline
421004385..1004930PHAGE_Lister_A006: TerS; LMOh7858_2436; phage(gi157325423)1e-97Showinfo_outline
431004896..1006242PHAGE_Lister_A006: TerL; LMOh7858_2435; phage(gi157325434)0.0Showinfo_outline
441006257..1007816PHAGE_Lister_A006: gp3; LMOh7858_2434; phage(gi157325445)0.0Showinfo_outline
451007821..1008864PHAGE_Lister_A006: gp4; LMOh7858_2433; phage(gi157325456)0.0Showinfo_outline
461008960..1009514PHAGE_Lister_A006: gp5; LMOh7858_2432; phage(gi157325467)1e-101Showinfo_outline
471009537..1010409PHAGE_Lister_A006: Cps; LMOh7858_2431; phage(gi157325479)2e-144Showinfo_outline
481010423..1010578PHAGE_Lister_A006: gp7; LMOh7858_2430; phage(gi157325482)9e-13Showinfo_outline
491010579..1010932PHAGE_Lister_A006: gp8; LMOh7858_2429; phage(gi157325483)1e-61Showinfo_outline
501010932..1011297PHAGE_Lister_A006: gp9; LMOh7858_2428; phage(gi157325484)3e-64Showinfo_outline
511011601..1011972PHAGE_Lister_A006: gp11; LMOh7858_2427; phage(gi157325425)9e-66Showinfo_outline
521011977..1012666PHAGE_Lister_A006: Tsh; LMOh7858_2426; phage(gi157325426)2e-109Showinfo_outline
531012722..1013153PHAGE_Lister_A006: gp13; LMOh7858_2425; phage(gi157325427)1e-74Showinfo_outline
541013228..1013461PHAGE_Lister_A006: gp14; LMOh7858_2424; phage(gi157325428)3e-36Showinfo_outline
551013466..1018274PHAGE_Lister_A006: gp15; LMOh7858_2423; phage(gi157325429)0.0Showinfo_outline
561018278..1019102PHAGE_Geobac_E2: hypothetical protein GBVE2_gp016; LMOh7858_2422; phage(gi148747744)4e-43Showinfo_outline
571019115..1020128PHAGE_Lactob_phig1e: hypothetical protein phig1ep22; LMOh7858_2421; phage(gi23455812)7e-51Showinfo_outline
581020125..1021153PHAGE_Lister_A500: gp19; LMOh7858_2420; phage(gi157324979)4e-120Showinfo_outline
591021150..1022223PHAGE_Lister_A500: gp20; LMOh7858_2419; phage(gi157324980)0.0Showinfo_outline
601022220..1022561PHAGE_Lister_A500: gp21; LMOh7858_2418; phage(gi157324981)1e-59Showinfo_outline
611022562..1022708PHAGE_Lister_A500: gp22; LMOh7858_2417; phage(gi157324982)8e-22Showinfo_outline
621022745..1023110PHAGE_Lister_A500: gp23; LMOh7858_2416; phage(gi157324983)4e-63Showinfo_outline
631023123..1023404PHAGE_Lister_A118: holin; LMOh7858_2415; phage(gi16798807)1e-45Showinfo_outline
641023404..1024273PHAGE_Lister_A006: PlyA006; LMOh7858_2414; phage(gi157325435)1e-74Showinfo_outline
651024397..1025197PHAGE_Staphy_52A: ORF013; LMOh7858_2413; phage(gi66396280)1e-08Showinfo_outline
661025199..1026023PHAGE_Staphy_52A: ORF019; LMOh7858_2412; phage(gi66396286)4e-09Showinfo_outline
671026272..1026505PHAGE_Lister_A006: gp26; LMOh7858_2411; phage(gi157325441)2e-34Showinfo_outline
681026502..1026699PHAGE_Lister_A006: gp27; LMOh7858_2410; phage(gi157325442)3e-16Showinfo_outline
691028879..1028890attR0.0Showinfo_outline
Listeria monocytogenes serotype 4b str. H7858 strain 4b H7858
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 2972254 bps
Phages: 2
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Click on a sequence to see details.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download