Submission Results

Sequence Name: Bacillus cereus G9241, whole genome shotgun sequencing project.

GenBank Accession Number: AAEK00000000.1

GenInfo (GI) Number: 47558803

Download Results: AAEK00000000.1.PHASTER.zip

gi|47558803|ref|AAEK00000000.1| Bacillus cereus G9241 , whole genome shotgun sequence. .5934942, gc%: 35.25%

Download summary as .txt file: summary.txt file_download

Total: 4 prophage regions have been identified, of which 0 regions are intact, 3 regions are incomplete, and 1 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
121.4Kbincomplete50161964342-1985815 info_outlinePHAGE_Shrimp_virus32.55%Show info_outline
222.6Kbincomplete30124573403-4596022 info_outlinePHAGE_Deep_s_D6E38.56%Show info_outline
328.3Kbincomplete40394937944-4966262 info_outlinePHAGE_Bacill_IEBH35.49%Show info_outline
415.4Kbquestionable80225817224-5832648 info_outlinePHAGE_Bacill_IEBH34.96%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|47558803|ref|AAEK00000000.1| Bacillus cereus G9241 , whole genome shotgun sequence. [asmbl_id: NC_000000].5934942, gc%: 35.25%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 21 CDS

#CDS PositionBLAST HitE-ValueSequence
11964342..1964353attL0.0Showinfo_outline
21964380..1964392attL0.0Showinfo_outline
31964877..1965200PHAGE_Thermo_THSA_485A: transcriptional regulator, XRE family; BCE_G9241_1292; phage(gi397912660)1e-10Showinfo_outline
4complement(1965277..1965846)cell envelope-bound metalloprotease; BCE_G9241_12910.0Showinfo_outline
51966188..1966763PHAGE_Acanth_1: hypothetical protein ATCV1_z763L; BCE_G9241_1290; phage(gi155371710)1e-07Showinfo_outline
61966228..1966791PHAGE_Shrimp_virus: wsv250; BCE_G9241_1289; phage(gi17158353)5e-08Showinfo_outline
7complement(1966301..1967272)PHAGE_Atelin_3: orf 48; BCE_G9241_1288; phage(gi9631239)7e-21Showinfo_outline
8complement(1967434..1968021)spore coat-associated protein N; BCE_G9241_12870.0Showinfo_outline
9complement(1968082..1968651)signal sequence peptidase; BCE_G9241_12860.0Showinfo_outline
10complement(1968844..1970130)PHAGE_Stx2_c_1717: penicillin-binding protein 6b; BCE_G9241_1285; phage(gi209447203)2e-14Showinfo_outline
111970205..1970318hypothetical protein protein; BCE_G9241_12840.0Showinfo_outline
12complement(1970286..1970513)conserved hypothetical protein protein; BCE_G9241_12830.0Showinfo_outline
131971211..1971283tRNA0.0Showinfo_outline
141971393..1972319PHAGE_Achole_L2: integrase; BCE_G9241_1282; phage(gi9626516)6e-12Showinfo_outline
151973197..1974465PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p069; BCE_G9241_1281; phage(gi9630194)4e-77Showinfo_outline
161974843..1974855attR0.0Showinfo_outline
171975326..1975556hypothetical protein protein; BCE_G9241_12800.0Showinfo_outline
18complement(1975897..1976085)hypothetical protein protein; BCE_G9241_12790.0Showinfo_outline
191976006..1976773PHAGE_Melano_entomopoxvirus: ORF MSV156 hypothetical protein; BCE_G9241_1278; phage(gi9631364)3e-05Showinfo_outline
20complement(1976933..1977493)PHAGE_Clostr_phiCD38_2: recombinase/resolvase; BCE_G9241_1277; phage(gi333798162)8e-54Showinfo_outline
211985815..1985826attR0.0Showinfo_outline

Region 2, total 14 CDS

#CDS PositionBLAST HitE-ValueSequence
14573403..4573415attL0.0Showinfo_outline
24587819..4589153PHAGE_Megavi_lba: putative glutamine synthetase; BCE_G9241_3665; phage(gi448825676)1e-11Showinfo_outline
34589326..4589631PHAGE_Bacill_AP50: endolysin; BCE_G9241_3664; phage(gi211956477)2e-15Showinfo_outline
4complement(4589646..4590227)hypothetical protein protein; BCE_G9241_36630.0Showinfo_outline
5complement(4590307..4590789)PHAGE_Lactoc_lato: putative tail lysin; BCE_G9241_3662; phage(gi30089904)9e-05Showinfo_outline
6complement(4590815..4591621)PHAGE_Human__8: LANA; BCE_G9241_3661; phage(gi139472804)2e-08Showinfo_outline
7complement(4591905..4592777)PHAGE_Bacill_BCP78: hypothetical protein; BCE_G9241_3660; phage(gi410492980)4e-79Showinfo_outline
84592846..4593175transcriptional regulator, PadR family; BCE_G9241_36590.0Showinfo_outline
94593168..4593710conserved hypothetical protein protein; BCE_G9241_36580.0Showinfo_outline
104593662..4593784hypothetical protein protein; BCE_G9241_36570.0Showinfo_outline
114593792..4594517hypothetical protein, putative; BCE_G9241_36560.0Showinfo_outline
12complement(4594604..4595224)PHAGE_Deep_s_D6E: transcriptional regulator; BCE_G9241_3655; phage(gi423262353)4e-18Showinfo_outline
134595317..4595329attR0.0Showinfo_outline
144595366..4596022PHAGE_Thermo_THSA_485A: Recombinase; BCE_G9241_3654; phage(gi397912662)2e-07Showinfo_outline

Region 3, total 39 CDS

#CDS PositionBLAST HitE-ValueSequence
14937944..4939422PHAGE_Bacill_IEBH: putative tail component; BCE_G9241_pBClin29_0001; phage(gi197261573)0.0Showinfo_outline
24939422..4945019PHAGE_Bacill_IEBH: phage minor structural protein; BCE_G9241_pBClin29_0002; phage(gi197261574)0.0Showinfo_outline
3complement(4944149..4944340)hypothetical protein protein; BCE_G9241_pBClin29_00030.0Showinfo_outline
44945058..4945294PHAGE_Bacill_phBC6A51: XpaF1 protein; BCE_G9241_pBClin29_0004; phage(gi31415801)3e-25Showinfo_outline
54945296..4945502PHAGE_Staphy_SpaA1: Holin, phage phi LC3 holin homolog; BCE_G9241_pBClin29_0005; phage(gi399498884)1e-29Showinfo_outline
64945502..4946263PHAGE_Bacill_BCP78: cell wall hydrolase/autolysin; BCE_G9241_pBClin29_0006; phage(gi410492783)8e-43Showinfo_outline
7complement(4946351..4947010)PHAGE_Bacill_L: gp34; BCE_G9241_pBClin29_0007; phage(gi216905999)2e-08Showinfo_outline
8complement(4947032..4947466)PHAGE_Geobac_E2: putative regulatory protein; BCE_G9241_pBClin29_0008; phage(gi148747786)3e-14Showinfo_outline
9complement(4947592..4947981)pXO2-70; BCE_G9241_pBClin29_00090.0Showinfo_outline
10complement(4948039..4948278)PHAGE_Bacill_IEBH: hypothetical protein IEBH_gp70; BCE_G9241_pBClin29_0010; phage(gi197261580)1e-08Showinfo_outline
114948657..4948806conserved hypothetical protein protein; BCE_G9241_pBClin29_00110.0Showinfo_outline
124949012..4949602PHAGE_Parame_AR158: hypothetical protein AR158_C239R; BCE_G9241_pBClin29_0012; phage(gi157953429)1e-04Showinfo_outline
134949752..4949868hypothetical protein protein; BCE_G9241_pBClin29_00130.0Showinfo_outline
14complement(4950003..4950395)similar to unknown protein; BCE_G9241_pBClin29_00140.0Showinfo_outline
15complement(4950385..4951206)PHAGE_Entero_EF62phi: chromosome partitioning ATPase; BCE_G9241_pBClin29_0015; phage(gi384519759)3e-56Showinfo_outline
164952108..4952221hypothetical protein protein; BCE_G9241_pBClin29_00160.0Showinfo_outline
174952864..4953280hypothetical protein protein; BCE_G9241_pBClin29_00170.0Showinfo_outline
184953277..4954029hypothetical protein protein; BCE_G9241_pBClin29_00180.0Showinfo_outline
19complement(4954039..4954143)hypothetical protein protein; BCE_G9241_pBClin29_00190.0Showinfo_outline
20complement(4954284..4954892)PHAGE_Bacill_IEBH: hypothetical protein IEBH_gp81; BCE_G9241_pBClin29_0020; phage(gi197261595)4e-108Showinfo_outline
214955933..4957126PHAGE_Bacill_IEBH: helix-turn-helix protein; BCE_G9241_pBClin29_0021; phage(gi197261592)5e-23Showinfo_outline
224957139..4957321hypothetical protein protein; BCE_G9241_pBClin29_00220.0Showinfo_outline
234957461..4957580DNA polymerase III, delta prime chain; BCE_G9241_pBClin29_00230.0Showinfo_outline
24complement(4957625..4957975)PHAGE_Bacill_IEBH: helix-turn-helix domain protein; BCE_G9241_pBClin29_0024; phage(gi197261593)4e-11Showinfo_outline
254958422..4959198PHAGE_Lister_A006: gp36; BCE_G9241_pBClin29_0025; phage(gi157325452)7e-37Showinfo_outline
264959735..4959872hypothetical protein protein; BCE_G9241_pBClin29_00260.0Showinfo_outline
274959869..4960030PHAGE_Bacill_IEBH: hypothetical protein IEBH_gp05; BCE_G9241_pBClin29_0027; phage(gi197261515)2e-13Showinfo_outline
284960023..4961171PHAGE_Clostr_st: putative IS transposase (OrfB); BCE_G9241_pBClin29_0028; phage(gi80159731)5e-99Showinfo_outline
294961408..4961563PHAGE_Bacill_phBC6A51: hypothetical protein BC1881; BCE_G9241_pBClin29_0029; phage(gi31415775)7e-05Showinfo_outline
304962109..4962714PHAGE_Acanth_mimivirus: uncharacterized HNH endonuclease; BCE_G9241_pBClin29_0030; phage(gi311977623)2e-29Showinfo_outline
314962707..4962892hypothetical protein protein; BCE_G9241_pBClin29_00310.0Showinfo_outline
324962889..4963092hypothetical protein protein; BCE_G9241_pBClin29_00320.0Showinfo_outline
334963089..4963772PHAGE_Staphy_phi5967PVL: hypothetical protein; BCE_G9241_pBClin29_0033; phage(gi431810256)5e-38Showinfo_outline
344963786..4963962PHAGE_Bacill_IEBH: hypothetical protein IEBH_gp06; BCE_G9241_pBClin29_0034; phage(gi197261516)4e-19Showinfo_outline
354963941..4964720PHAGE_Bacill_IEBH: DNA replication protein; BCE_G9241_pBClin29_0035; phage(gi197261518)2e-68Showinfo_outline
364964653..4965462PHAGE_Bacill_WBeta: putative DnaC protein; BCE_G9241_pBClin29_0036; phage(gi85701414)2e-32Showinfo_outline
374965478..4965669PHAGE_Bacill_IEBH: hypothetical protein IEBH_gp11; BCE_G9241_pBClin29_0037; phage(gi197261521)7e-21Showinfo_outline
384965666..4965929PHAGE_Bacill_IEBH: hypothetical protein IEBH_gp12; BCE_G9241_pBClin29_0038; phage(gi197261522)1e-19Showinfo_outline
394965945..4966262PHAGE_Bacill_IEBH: hypothetical protein IEBH_gp13; BCE_G9241_pBClin29_0039; phage(gi197261523)1e-13Showinfo_outline

Region 4, total 26 CDS

#CDS PositionBLAST HitE-ValueSequence
15817224..5817235attL0.0Showinfo_outline
25817250..5817262attL0.0Showinfo_outline
3complement(5818593..5818964)PHAGE_Bacill_IEBH: hypothetical protein IEBH_gp40; BCE_G9241_CNI_0159; phage(gi197261550)1e-16Showinfo_outline
4complement(5819103..5819243)hypothetical protein protein; BCE_G9241_CNI_01600.0Showinfo_outline
5complement(5819647..5819886)hypothetical protein protein; BCE_G9241_CNI_01610.0Showinfo_outline
6complement(5819904..5820077)PHAGE_Bacill_IEBH: hypothetical protein IEBH_gp36; BCE_G9241_CNI_0162; phage(gi197261546)1e-25Showinfo_outline
7complement(5820099..5820275)hypothetical protein protein; BCE_G9241_CNI_01630.0Showinfo_outline
8complement(5820309..5820449)hypothetical protein protein; BCE_G9241_CNI_01640.0Showinfo_outline
9complement(5820486..5820584)hypothetical protein protein; BCE_G9241_CNI_01650.0Showinfo_outline
10complement(5820629..5820964)PHAGE_Bacill_IEBH: portal protein; BCE_G9241_CNI_0148; phage(gi197261560)3e-22Showinfo_outline
11complement(5821020..5822297)PHAGE_Bacill_PBC1: terminase large subunit; BCE_G9241_CNI_0149; phage(gi389060324)0.0Showinfo_outline
12complement(5822278..5823180)PHAGE_Bacill_IEBH: terminase small subunit; BCE_G9241_CNI_0150; phage(gi197261558)4e-125Showinfo_outline
13complement(5823237..5823713)PHAGE_Bacill_BtCS33: integrase; BCE_G9241_CNI_0151; phage(gi392972759)4e-41Showinfo_outline
14complement(5823746..5824051)conserved hypothetical protein protein; BCE_G9241_23910.0Showinfo_outline
15complement(5824032..5824124)hypothetical protein protein; BCE_G9241_23900.0Showinfo_outline
16complement(5824069..5824851)protease, putative; BCE_G9241_23890.0Showinfo_outline
175825336..5825539PHAGE_Lactoc_bIL312: Csp; BCE_G9241_2388; phage(gi13095918)1e-19Showinfo_outline
185825626..5825811cold shock protein-related protein; BCE_G9241_23870.0Showinfo_outline
19complement(5825851..5826402)PHAGE_Bacill_SPBc2: hypothetical protein SPBc2p012; BCE_G9241_2386; phage(gi9630137)4e-07Showinfo_outline
205826781..5828628phosphoglycerol transferase; BCE_G9241_53910.0Showinfo_outline
215828707..5828719attR0.0Showinfo_outline
225829084..5829221hypothetical protein protein; BCE_G9241_53920.0Showinfo_outline
235829239..5829820D-alanine aminotransferase; BCE_G9241_53930.0Showinfo_outline
24complement(5829821..5830137)PHAGE_Bacill_IEBH: terminase small subunit; BCE_G9241_CNI_0156; phage(gi197261558)2e-51Showinfo_outline
25complement(5830194..5830733)PHAGE_Bacill_BtCS33: integrase; BCE_G9241_CNI_0157; phage(gi392972759)4e-45Showinfo_outline
265832648..5832659attR0.0Showinfo_outline
Bacillus cereus G9241 , whole genome shotgun sequence.
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 5934942 bps
Phages: 4
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download