Submission Results

Sequence Name: Desulfuromonas acetoxidans DSM 684, whole genome shotgun sequencing

GenBank Accession Number: AAEW00000000.2

GenInfo (GI) Number: 95135742

Download Results: AAEW00000000.2.PHASTER.zip

gi|95135742|ref|AAEW00000000.2| Desulfuromonas acetoxidans DSM 684 whole genome shotgun .3828328, gc%: 51.83%

Download summary as .txt file: summary.txt file_download

Total: 2 prophage regions have been identified, of which 0 regions are intact, 2 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
124.3Kbincomplete30181090793-1115173 info_outlinePHAGE_Cronob_ENT3911847.63%Show info_outline
224.3Kbincomplete50132275046-2299367 info_outlinePHAGE_Escher_D10848.68%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|95135742|ref|AAEW00000000.2| Desulfuromonas acetoxidans DSM 684 whole genome shotgun [asmbl_id: NC_000000].3828328, gc%: 51.83%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 20 CDS

#CDS PositionBLAST HitE-ValueSequence
11090793..1090804attL0.0Showinfo_outline
21095312..1096034PROPHAGE_Escher_CFT073: transposase insF; Dace_1780; phage(gi26249410)1e-25Showinfo_outline
3complement(1096093..1097646)FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Dace_17810.0Showinfo_outline
4complement(1097690..1098502)conserved hypothetical protein; Dace_17820.0Showinfo_outline
5complement(1098526..1099620)cobyrinic acid a,c-diamide synthase family protein; Dace_17830.0Showinfo_outline
6complement(1099666..1100046)protein of unknown function DUF423; Dace_17840.0Showinfo_outline
7complement(1100081..1100542)hypothetical protein; Dace_17850.0Showinfo_outline
81100699..1101274hypothetical protein; Dace_17860.0Showinfo_outline
91101426..1102553rRNA (guanine-N(2)-)-methyltransferase; Dace_17870.0Showinfo_outline
10complement(1102603..1103529)beta-lactamase-like; Dace_17880.0Showinfo_outline
111103803..1105035acetate kinase; Dace_17890.0Showinfo_outline
121105227..1107200PHAGE_Ectoca_1: EsV-1-65; Dace_1790; phage(gi13242537)6e-16Showinfo_outline
131107201..1107638PHAGE_Feldma_virus: putative sensor histidine kinase; Dace_1791; phage(gi197322366)5e-06Showinfo_outline
141107650..1109779PHAGE_Pseudo_MP1412: diguanylate-cyclase GGDEF domain; Dace_1792; phage(gi399529005)2e-06Showinfo_outline
15complement(1109859..1111946)PHAGE_Yersin_phiR201: phage tail fibers; Dace_1793; phage(gi431810217)1e-06Showinfo_outline
161112190..1112201attR0.0Showinfo_outline
17complement(1112258..1112752)hypothetical protein; Dace_17940.0Showinfo_outline
18complement(1112859..1113179)hypothetical protein; Dace_17950.0Showinfo_outline
191113480..1113911PHAGE_Cronob_ENT39118: protein umuD; Dace_1796; phage(gi431811072)8e-25Showinfo_outline
201113908..1115173PHAGE_Cronob_ENT39118: DNA polymerase; Dace_1797; phage(gi431811050)8e-109Showinfo_outline

Region 2, total 15 CDS

#CDS PositionBLAST HitE-ValueSequence
12275046..2275057attL0.0Showinfo_outline
22285199..2286317PHAGE_Entero_Sf6: putative transposase OrfB; Dace_1006; phage(gi41057343)7e-71Showinfo_outline
3complement(2286570..2287286)PHAGE_Pseudo_JBD88a: hypothetical protein; Dace_1007; phage(gi448244687)2e-08Showinfo_outline
42288229..2290139PHAGE_Escher_D108: DNA transposition protein A; Dace_1008; phage(gi281199647)2e-107Showinfo_outline
52290224..2291204PHAGE_Escher_D108: DNA transposition protein B; Dace_1009; phage(gi281199648)6e-60Showinfo_outline
62291201..2291479hypothetical protein; Dace_10100.0Showinfo_outline
72291524..2291982hypothetical protein; Dace_10110.0Showinfo_outline
82291979..2292236hypothetical protein; Dace_10120.0Showinfo_outline
92292323..2294143PHAGE_Clostr_phiC2: putative tail tape measure protein; Dace_1013; phage(gi134287355)8e-07Showinfo_outline
102294118..2295233PHAGE_Strept_phi3396: putative phage-related tail tape measure protein; Dace_1014; phage(gi126011107)4e-07Showinfo_outline
112295461..2295760hypothetical protein; Dace_10150.0Showinfo_outline
122295784..2296848PHAGE_Glossi_virus: hypothetical protein SGHV062; Dace_1016; phage(gi168804078)6e-06Showinfo_outline
132297352..2297675PHAGE_Escher_D108: GemB; Dace_1017; phage(gi281199660)5e-08Showinfo_outline
142297691..2299367PROPHAGE_Escher_EDL933: putative transposase; Dace_1018; phage(gi15803522)1e-05Showinfo_outline
152298013..2298024attR0.0Showinfo_outline
Desulfuromonas acetoxidans DSM 684 whole genome shotgun
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 3828328 bps
Phages: 2
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Click on a region in the genome above to show details here.
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Click on a sequence to see details.
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Click on a sequence to see details.
Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download