Submission Results

Sequence Name: Wolbachia endosymbiont of Drosophila ananassae, whole genome

GenBank Accession Number: AAGB00000000.1

GenInfo (GI) Number: 58535449

Download Results: AAGB00000000.1.PHASTER.zip

gi|58535449|ref|AAGB00000000.1| Wolbachia endosymbiont of Drosophila ananassae gdan_438, whole .1440750, gc%: 35.71%

Download summary as .txt file: summary.txt file_download

Total: 5 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 4 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
122.4Kbquestionable802191241-113657 info_outlinePROPHAGE_Xantho_3391335.06%Show info_outline
215.6Kbquestionable8020572691-588365 info_outlinePHAGE_Vibrio_vB_VpaM_MAR36.33%Show info_outline
36.5Kbincomplete3011987462-994032 info_outlinePHAGE_Canary_virus38.23%Show info_outline
435.3Kbquestionable90161013868-1049263 info_outlinePROPHAGE_Pseudo_KT244035.93%Show info_outline
58Kbquestionable75141138838-1146900 info_outlinePROPHAGE_Pseudo_KT244036.92%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|58535449|ref|AAGB00000000.1| Wolbachia endosymbiont of Drosophila ananassae gdan_438, whole [asmbl_id: NC_000000].1440750, gc%: 35.71%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 23 CDS

#CDS PositionBLAST HitE-ValueSequence
191241..91252attL0.0Showinfo_outline
296718..97293PHAGE_Clostr_phiCD6356: putative phage tail tape measure protein; WwAna1225; phage(gi326536862)1e-05Showinfo_outline
397385..97948PHAGE_Helico_2: methyltransferase; WwAna1226; phage(gi370703039)2e-07Showinfo_outline
498736..99194PHAGE_Fowlpo_virus: Ankyrin repeat gene family protein; WwAna1227; phage(gi9634704)2e-05Showinfo_outline
599277..100830PHAGE_Acanth_mimivirus: putative ankyrin repeat protein; WwAna1228; phage(gi311977464)3e-17Showinfo_outline
6101194..101505conserved hypothetical protein; WwAna12290.0Showinfo_outline
7101642..101881uncharacterized phage protein, putative; WwAna12300.0Showinfo_outline
8complement(101897..102892)PHAGE_Spirop_3x: hypothetical protein SkV1VCR23x_ORF3; WwAna1231; phage(gi160688404)2e-10Showinfo_outline
9103025..103222uncharacterized phage protein, putative; WwAna12320.0Showinfo_outline
10103521..103931conserved hypothetical protein; WwAna12330.0Showinfo_outline
11103906..104295conserved hypothetical protein; WwAna12340.0Showinfo_outline
12104331..105146PHAGE_Staphy_SA11: hypothetical protein; WwAna1235; phage(gi422935722)3e-05Showinfo_outline
13106099..106479PROPHAGE_Shewan_MR-1: ISSod6, transposase; WwAna1236; phage(gi24374783)2e-08Showinfo_outline
14106590..106931PROPHAGE_Xantho_33913: IS1480 transposase; WwAna1237; phage(gi21231089)4e-09Showinfo_outline
15complement(107491..107979)ISSod10, transposase OrfA, putative; WwAna12380.0Showinfo_outline
16108249..108584PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; WwAna1239; phage(gi428782737)4e-30Showinfo_outline
17108587..109348PROPHAGE_Salmon_Ty2: phage baseplate assembly protein; WwAna1240; phage(gi29143752)1e-30Showinfo_outline
18109302..109397hypothetical protein; WwAna12410.0Showinfo_outline
19109397..110551conserved hypothetical protein; WwAna12420.0Showinfo_outline
20110719..111531PHAGE_Canary_virus: CNPV223 ankyrin repeat protein; WwAna1243; phage(gi40556161)5e-27Showinfo_outline
21111746..112027hypothetical protein; WwAna12440.0Showinfo_outline
22111803..111814attR0.0Showinfo_outline
23112182..113657PHAGE_Lister_A118: putative integrase; WwAna1245; phage(gi16798814)2e-15Showinfo_outline

Region 2, total 20 CDS

#CDS PositionBLAST HitE-ValueSequence
1572691..573236PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; WwAna1752; phage(gi26989833)3e-09Showinfo_outline
2573794..575215glutamyl-tRNA(Gln) amidotransferase, B subunit; WwAna17530.0Showinfo_outline
3575227..578511PHAGE_Canary_virus: CNPV223 ankyrin repeat protein; WwAna1754; phage(gi40556161)8e-40Showinfo_outline
4complement(579022..579260)cysteinyl-tRNA synthetase; WwAna17550.0Showinfo_outline
5complement(579357..580013)PROPHAGE_Salmon_Ty2: phage baseplate assembly protein; WwAna1170; phage(gi29143752)3e-33Showinfo_outline
6complement(580023..580349)PHAGE_Vibrio_vB_VpaM_MAR: baseplate assembly protein; WwAna1171; phage(gi428782737)3e-29Showinfo_outline
7complement(580364..580618)PHAGE_Campyl_NCTC12673: Probable gp5.4 conserved hypothetical protein; WwAna1172; phage(gi332672343)5e-09Showinfo_outline
8complement(580627..581082)PHAGE_Salmon_RE_2010: baseplate assembly protein V; WwAna1173; phage(gi418489709)4e-20Showinfo_outline
9complement(581069..581542)PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; WwAna1174; phage(gi428782734)3e-07Showinfo_outline
10complement(581523..582020)PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; WwAna1175; phage(gi428782733)2e-11Showinfo_outline
11complement(582013..582279)conserved hypothetical protein; WwAna11760.0Showinfo_outline
12582328..582624hypothetical protein; WwAna11770.0Showinfo_outline
13complement(582417..583421)PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; WwAna1178; phage(gi428782731)4e-86Showinfo_outline
14583171..583347hypothetical protein; WwAna11790.0Showinfo_outline
15complement(583447..583818)PHAGE_Vibrio_vB_VpaM_MAR: hypothetical protein; WwAna1180; phage(gi428782730)3e-06Showinfo_outline
16complement(583886..584923)PHAGE_Burkho_phiE125: putative capsid assembly protein/protease; WwAna1181; phage(gi17975166)5e-50Showinfo_outline
17complement(584920..586341)PHAGE_Vibrio_vB_VpaM_MAR: portal protein; WwAna1182; phage(gi428782728)5e-100Showinfo_outline
18complement(586341..587399)Hypothetical cytosolic protein, putative; WwAna11830.0Showinfo_outline
19complement(587399..587623)conserved hypothetical protein; WwAna11840.0Showinfo_outline
20complement(587625..588365)PHAGE_Entero_mEp237: terminase large subunit A; WwAna1185; phage(gi435439267)3e-25Showinfo_outline

Region 3, total 12 CDS

#CDS PositionBLAST HitE-ValueSequence
1987462..987932PHAGE_Tetras_SI1: hypothetical protein; WwAna0305; phage(gi472342269)2e-05Showinfo_outline
2988077..988547conserved hypothetical protein; WwAna03060.0Showinfo_outline
3988567..988935PHAGE_Canary_virus: CNPV151 ankyrin repeat protein; WwAna0307; phage(gi40556089)1e-05Showinfo_outline
4989065..989169hypothetical protein; WwAna08510.0Showinfo_outline
5complement(989311..989706)PHAGE_Atlant_virus: polyprotein; WwAna0852; phage(gi83722645)9e-05Showinfo_outline
6complement(989706..991016)PHAGE_Melano_entomopoxvirus: ORF MSV027 tryptophan repeat gene family protein; WwAna0853; phage(gi9631532)4e-07Showinfo_outline
7complement(991538..991840)tRNA pseudouridine synthase A; WwAna10190.0Showinfo_outline
8complement(991882..992034)conserved hypothetical protein; WwAna10200.0Showinfo_outline
9992069..992170transposase, IS5 family, truncation; WwAna10210.0Showinfo_outline
10complement(992309..993327)ubiquinol-cytochrome c reductase, cytochrome c1; WwAna10220.0Showinfo_outline
11993336..993530PROPHAGE_Xylell_Temecula1: phage-related tail protein; WwAna0161; phage(gi28198980)2e-06Showinfo_outline
12complement(993496..994032)PHAGE_Canary_virus: CNPV294 ankyrin repeat protein; WwAna0162; phage(gi40556232)1e-13Showinfo_outline

Region 4, total 18 CDS

#CDS PositionBLAST HitE-ValueSequence
11013868..1013895attL0.0Showinfo_outline
2complement(1020868..1021471)PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; WwAna0148; phage(gi26989833)3e-09Showinfo_outline
31023338..1023688CBS domain protein; WwAna06430.0Showinfo_outline
41023702..1024007PHAGE_Azospi_Cd: hypothetical protein APCd_gp10; WwAna0644; phage(gi168495113)1e-17Showinfo_outline
5complement(1024399..1025142)virB9 protein precursor; WwAna06450.0Showinfo_outline
61025205..1026092PHAGE_Vibrio_VP882: phage-related tail protein; WwAna0421; phage(gi126010872)1e-10Showinfo_outline
71026096..1026512PROPHAGE_Xylell_Temecula1: phage-related tail protein; WwAna0422; phage(gi28198982)6e-19Showinfo_outline
81026487..1026696PHAGE_Salmon_RE_2010: tail component protein; WwAna0423; phage(gi418489702)1e-11Showinfo_outline
91026698..1027006PHAGE_Vibrio_vB_VpaM_MAR: putative tail protein; WwAna0424; phage(gi428782753)4e-18Showinfo_outline
101027237..1028427PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; WwAna1631; phage(gi26989833)1e-09Showinfo_outline
11complement(1028470..1028918)PHAGE_Caulob_CcrColossus: putative tRNA nucleotidyl transferase; WwAna1632; phage(gi414088345)3e-05Showinfo_outline
12complement(1029392..1029499)hypothetical protein; WwAna03680.0Showinfo_outline
13complement(1029558..1030634)PHAGE_Entero_phiFL3A: integrase; WwAna0369; phage(gi281416214)5e-16Showinfo_outline
14complement(1030770..1031838)threonyl-tRNA synthetase; WwAna00400.0Showinfo_outline
15complement(1031835..1032026)conserved hypothetical protein; WwAna00410.0Showinfo_outline
16complement(1032142..1032611)NADH dehydrogenase I, I subunit; WwAna00420.0Showinfo_outline
171033592..1034335PHAGE_Feline_virus: Gag-Pro-Pol precursor polyprotein gPr80; WwAna0218; phage(gi9630708)7e-05Showinfo_outline
181049263..1049290attR0.0Showinfo_outline

Region 5, total 14 CDS

#CDS PositionBLAST HitE-ValueSequence
1complement(1138838..1139233)PHAGE_Feline_virus: Gag-Pro-Pol precursor polyprotein gPr80; WwAna0444; phage(gi9630708)9e-05Showinfo_outline
2complement(1139211..1139690)PHAGE_Melano_entomopoxvirus: ORF MSV027 tryptophan repeat gene family protein; WwAna0445; phage(gi9631532)6e-08Showinfo_outline
31139903..1140028hypothetical protein; WwAna04460.0Showinfo_outline
41140146..1140591conserved hypothetical protein; WwAna00280.0Showinfo_outline
5complement(1140816..1141403)PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; WwAna0029; phage(gi26989833)3e-09Showinfo_outline
6complement(1141578..1142320)PHAGE_Fowlpo_virus: Ankyrin repeat gene family protein; WwAna0471; phage(gi9634694)5e-08Showinfo_outline
71142417..1142809excinuclease ABC, B subunit; WwAna04720.0Showinfo_outline
8complement(1143024..1143515)PHAGE_Vibrio_vB_VpaM_MAR: portal protein; WwAna0371; phage(gi428782728)7e-24Showinfo_outline
9complement(1143664..1144008)PHAGE_Mannhe_phiMHaA1: baseplate assembly protein V; WwAna0372; phage(gi109289954)4e-14Showinfo_outline
10complement(1143995..1144171)conserved hypothetical protein; WwAna03730.0Showinfo_outline
111144515..1144889conserved hypothetical protein; WwAna04780.0Showinfo_outline
12complement(1144865..1145020)pyruvate dehydrogenase E1 beta subunit; WwAna04790.0Showinfo_outline
131145226..1145762PHAGE_Shrimp_virus: wsv091; WwAna0480; phage(gi17158195)4e-05Showinfo_outline
141145868..1146900PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; WwAna0035; phage(gi26989833)7e-09Showinfo_outline
Wolbachia endosymbiont of Drosophila ananassae gdan_438, whole
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 1440750 bps
Phages: 5
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Lysis
Terminase
Portal Protein
Protease
Coat Protein
Tail Shaft
Attachment Site
Integrase
Phage-like Protein
Hypotheical Protein
Other
Transposase
Fiber Protein
Plate Protein
tRNA

Download data as .txt file: png_input file_download