gi|00000000|ref|AAIAWN010000001.1|  Salmonella enterica strain PNUSAS083457 601961, gc%: 51.14%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
91092..91103                       attL                                                                                 N/A                 TGTTTTGTGTGA
complement(104359..105057)         PHAGE_Yersin_fHe_Yen9_04_NC_042116: L shaped tail fiber protein; FOU27_00575; phage(gi100273)     5.89e-18            SalmonellaentericaMLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEEMVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYLEDVQADEQRSNGTPQ
complement(105081..105737)         carbon-nitrogen hydrolase family protein; FOU27_00580                                N/A                 SalmonellaentericaMSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKSLPAPPDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSRLQRFSHKYALAVLMANACGSSALWDESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
complement(105844..106074)         PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; FOU27_00585; phage(gi422936677)     1.97e-22            SalmonellaentericaMKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEVVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK
106212..106586                     CopC domain-containing protein YobA; FOU27_00590                                     N/A                 SalmonellaentericaMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK
106587..107462                     copper homeostasis membrane protein CopD; FOU27_00595                                N/A                 SalmonellaentericaMMLTFVWITLRFIHFASLMLVYGCALYGAWLAPASIRRLMTRRFLHLQRHAAAWSVISAAFMLAIQGGLMGGGWPDVFSVSVWGAVLQTRFGAVWIWQIILALVTLVVVVIAPVKMQRRLLILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAAAWFGGLLPVVYCMRMAQGRWRQHAISAMMRFSRYGHFFVAGVLLTGISNTLLITGFTAIWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGGIVLAIVSLFATLEPF
107479..107832                     PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; FOU27_00600; phage(gi971764937)     1.33e-11            SalmonellaentericaMKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS
complement(108215..109294)         PHAGE_Entero_HK022_NC_002166: integrase; FOU27_00605; phage(gi9634144)               1.86e-92            SalmonellaentericaMSRKKYDANLPRNLTYRKASKSFFWRNPLTDKEFPLGQIARRDAITQAIEANNFIAQNHTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRSLSVNTYKIRGNQLATVREKMGEIILAEVTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRAAAEHMPAWFPLAMNLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDKAYMML
complement(109269..109547)         excisionase; FOU27_00610                                                             N/A                 SalmonellaentericaMTMSFVRLETWGELNYPDDPPPLTTLRRWARNGNIYPTPVLHGRTYRVDPDAFYIKPNKVGLVLEQHHPNGRTGKPSALLEKLISESKKVRC
complement(109608..109844)         hypothetical protein; FOU27_00615                                                    N/A                 SalmonellaentericaMMDTRDLCPQCQKLHEAGEFIRVADYRKNSALPQPCLTEEQADRIRAAHWAGFTGRRAGDVKVLPGGGQQSFKFYPDH
complement(110135..110320)         DUF1187 family protein; FOU27_00620                                                  N/A                 SalmonellaentericaMYKYRITAIVKKPGNSPTNWVRFSDKKMNKAECEKMLAGRTEAGKSREEKVTLEEFKCIKE
complement(110367..111197)         PHAGE_Salmon_epsilon15_NC_004775: RecT; FOU27_00625; phage(gi30387413)               6.48e-106           SalmonellaentericaMPKQPPIAKADLQKTQGARTPTAVKNNNDVISFINQPSMKEQLAAALPRHMTAERMIRIATTEIRKVPALGDCDTMSFVSAIVQCSQLGLEPGGALGHAYLLPFGNKNEKSGKKNVQLIIGYRGMIDLARRSGQIASLSARVVREGDDFSFEFGLEEKLVHRPGENEDAPVTHVYAVARLKDGGTQFEVMTRKQIELVRAQSKAGNNGPWVTHWEEMAKKTAIRRLFKYLPVSIEIQRAVSMDEKETLTIDPADASVITGEYSVVESAGVEENVTA
complement(111190..112797)         PHAGE_Erwini_phiEt88_NC_015295: exodeoxyribonuclease; FOU27_00630; phage(gi327198600)     3.57e-98            SalmonellaentericaNPDLRRTWCESFVAVHGVRDPDWYEYVPDNTPTTHEENAARLRQAGKCLRDIEAGRFQCDEEKPQPTGELADEPATPEAVEQDTTEHHPDPQPLENEPPVSQTEAGYQKIRAELHEARKNIPPKNPVDVGKQLAAVRGEYAEDISDPNDPKWVPNNYSASNQGEKEEVVPEEKQPAAEPEAVTRNADGTFDVSALFPPPSNQTEKTEARTERDGETPKESNQQETAGDTGQEITTDGGSGTGGDEAGEAADPVENGNFTVPDDIQPGIYYDIPNEAYHAGPGVSKSQLDDIADTPAIYLWRKNAPVDTEKTKTLDTGTAFHCRILEPEEFSKRFIIAPEFNRRTSAGKEEEKTFLEECARTGRTVLTAEEGRKIELMYQSVMALPLGQWLVESAGYAESSVYWEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFRTAYYDYRYHVQDAFYSDGYRAQFGEIPTFVFLVASTTAECGRYPVEIFMMGEDAKLAGQREYRRNLQTLAECLSNDEWPAIKTLSLPRWAKENANA
112750..113037                     PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage endolysin; FOU27_00635; phage(gi169257182)     2.78e-51            SalmonellaentericaMDGNKAFAPRPAKIRITGLENYTRCGVALKLDLVANPGQLELERHAARSAAWFFVTKGCLKYSGDLVRVTQIINGGQNGIGDQRERFEKAKSVLV
113034..113567                     PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; FOU27_00640; phage(gi16765210)     4.67e-122           SalmonellaentericaMNLLSALLKRYWLQLVFILLMAGAFIVGNVWSDRGWQKKWADRDSAESSQEVNAQTAARIIEQGRVIARDEAVKDAQAQAAKSAATAAGLSATVSQLRTEAKKLATRLDAAKHTANLAAAVRSKTTNADARMLANMLGDIAEEAKHYAGIADERYRAGMTCERVYDSVRESNNYRRY
complement(113824..113991)         lytic enzyme; FOU27_00645                                                            N/A                 SalmonellaentericaMKNIITIIVAIIIVFYAGMWSQKFLMEDECLDSGGSYNENGICNIAGSHQDVPPK
114294..114785                     PHAGE_Salmon_Fels_1_NC_010391: bacteriophage terminase, small subunit; FOU27_00650; phage(gi169257184)     1.32e-110           SalmonellaentericaMDGELKNLKCNISQLAAITGLHRQTVVSRLSGVPLAPGSNEKNKLYLLTDVIRVLMETPVSQPAEHQDPNKMTAKERKGWFDSEKGRLWLEKEMKQVVPLPEVRQQMAAIVKAITQVLEVWPDKLEKDKGWSADQLNEAQDVMDEVRILLVKAIQETADDDGE
114772..115339                     PHAGE_Salmon_Fels_1_NC_010391: bacteriophage terminase, large subunit; FOU27_00655; phage(gi169257185)     2.02e-26            SalmonellaentericaMTGNKYGSAAAVRREVAEYLRPPRRMPVAEGIKQFMFVPRGANTAVPWDDTLASQSFPKQQRPRNVSWFIPENWLAVHNRFFFVGLQAGGADRLPFPRYRWRGRWFFPGIQTYHHLYVCGDDTGREFAWSGNHRCEMAAFFAARSPAHDRHSFSLPGRSPSVVLALSTLRRLVPARDGKHGGVT
115338..116675                     PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage tail fiber protein; Lambda gpN homolog; FOU27_00660; phage(gi169257204)     0.0                 SalmonellaentericaMGEVQTKASLDSPALTGTPTAPTPETTAAGIEIATAAFVAAKVAQLVGSAPEALDTLQELADALGNDPNFATTVLNKLAGKQPLDETLTALSGKSADGLIEYVGLRETINHAADALQKSQNGGDIPEKPLFVQNIGALPASGTAVAANRLASRGALPALTGTTRGSDSGLIMGEVYNNGYPTQYGNILCLTGIGDGEILIGWRGVNGAPASAYIRSHRDTADAEWSEWAMFYTSLNPPPDSYPVGVAIAWTSDATPAGYALMQGQLFDKSAYPLLAIAYPSGIIPDMRGWTIKGKPTSGRAVLSQEMDGNKSHSHTARAQDTDLGTKTTSSFDCGTKLTNTMGNHTHQFGGYINSYRGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYNGGRMWSGPPGQRRPANEAGVGKFQ
116647..116967                     PHAGE_Salmon_SEN5_NC_028701: tail fiber protein; FOU27_00665; phage(gi966201575)     1.04e-54            SalmonellaentericaMKLAWESFSNPPKVINWQYASARQNAVFSTTAYCPSKTLCPNARTEYIGFGDYRTYCKKSGNTCISPRHQVDDIYIGSHNHAVSLSPNFHGKHLKPEYLSGVKNDV
116957..117541                     PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage tail assembly protein; FOU27_00670; phage(gi169257205)     5.88e-111           SalmonellaentericaMTFKMSDTPQTIKIFNLRSDTNEFIGAGDAYIPPHTGLSANCTDIAPPDIPSSYIEVFDSEIQTWSLHEDHRGETVYDTTTGNQVYISDLGPLPENVTSVSPGGGYKKWDSKAQVWVNDEAAEAAARLREAEGTKNRRLQIASEKIAPLQDAVDLDGATDKEKASLLAWRKYRVQVNRVDTLKPVWPEKPASSL
complement(117638..117838)         PHAGE_Phage_Gifsy_1_NC_010392: PagK-like protein; FOU27_00675; phage(gi169257211)     5.45e-42            SalmonellaentericaMKHVKSVFLAMVLILPSSLYPALTIAADSQDHKKEETIKPMPQKWCNLWPAGIPFPEDWFKMCRGY
complement(118029..118145)         PHAGE_Salmon_SEN34_NC_028699: putative tail assembly chaperone; FOU27_00680; phage(gi966201445)     4.14e-06            SalmonellaentericaMWLAYKNEVKLIDITNTPDNVNWPVPPGERASHDLKST
118408..118533                     arsenic transporter; FOU27_00685                                                     N/A                 SalmonellaentericaMFANADSELILTPIIIAVLLAPGFSKSTTLAILHFFFRREK
118662..118928                     hypothetical protein; FOU27_00690                                                    N/A                 SalmonellaentericaMVLTLYEGLIEHQIYPGLFNTAYYEGNNMFSLIKSRKVLFITTLLLLSSAAQPAFALGCIGDGGSTADCAKVCSLAAGLGPLGFLICF
119208..119354                     PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; FOU27_00695; phage(gi100036)      8.19e-17            SalmonellaentericaIGGRRPKLTPEQWAQAGCLIRAGVPRQQVAIIYDAGLSTLYRKFPVLG
127077..127088                     attR                                                                                 N/A                 TGTTTTGTGTGA

#### region 2 ####
274867..274880                     attL                                                                                 N/A                 GCCGCTTATGCCGC
complement(289109..289915)         PHAGE_Bacill_G_NC_023719: gp245; FOU27_01575; phage(gi593777701)                     1.09e-19            SalmonellaentericaMVETLLEVRNLSKTFRYRTGWFRRQTVDAVKPLSFTLRERQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHYGDYSFRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQRRKQIVETMRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTRRLIAGHFGEALTADAWRKDR
complement(289917..290909)         PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; FOU27_01580; phage(gi371496158)      4.19e-09            SalmonellaentericaMPLLDIRNLTIEFKTSEGWVKAVDRVSMTLSEGEIRGLVGESGSGKSLIAKAICGVAKDNWRVTADRMRFDDIDLLRLSSRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRLGWRKRRAIELLHRVGIKDHKDAMRSFPYELTDGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKDLVTTPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQRECIITPRLTGAKNHLYACHFPLNMERE
complement(290909..291799)         peptide ABC transporter permease SapC; FOU27_01585                                   N/A                 SalmonellaentericaMPYDSVYSEKRPPGTLRTAWRKFYSDAPAMVGLYGCAGLALLCIFGGWIAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFIVTLAATLCGLVLGVVAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLSHAMFAVWLALLPRMVRSVYSMVHDELEKEYVIAARLDGATTLNILWFAILPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAITLSVLLVNLLGDGIRRAIIAGVE
291923..292324                     PHAGE_Entero_phi80_NC_021190: integrase; FOU27_01590; phage(gi824479609)             4.88e-42            SalmonellaentericaMCTLMCISSHEVYTLLADTKLRKAPGKKRDQIKVISDAHGLNVRLSTSGSITFFYRYRWNGNAAQLTIGDYPTISLSHARERRQYFRSWLTEGLDPRHQMVLEKKKKTEALTVKEHTTTGRSFSTVRNLGQGH
292269..292527                     PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; FOU27_01595; phage(gi423262434)     2.70e-11            SalmonellaentericaIRLLGEVLALYGIWARVIKTDNGGWRQFGVWRDQDVAALVEAARGGIRGIVRLKVSGGVCVQLRYSLGGSQDRSEYSGMGCCVLA
complement(292704..293426)         PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; FOU27_01600; phage(gi209447200)     7.20e-34            SalmonellaentericaMGEKGFNKSACLHMLGQQISRVFSGKHLYPGVFISKDAASEFEKTISTHYKTLSSHIDLQQYTNDVNCGAAVGIVARQQENLILDEITLSAFKKVYITGHGAAGTNVLASGDSVFSAKQLVDILVANKVLEVIKDIRISSCYSADKREPNSFKKEDIDKANRNAGFFERMVFGERDTFIERVANEIWSRGYIDVKVSGYHGAGVFYAGEILFTHLRSTTIPPTITVKRKSVRVTLESPID
293897..294079                     PHAGE_Salmon_SPN3UB_NC_019545: NinG; FOU27_01605; phage(gi423262439)                 1.48e-27            SalmonellaentericaMAKLPRRKCKVCREWFSPAYSNVVWCCPEHGAIYALELRARRIRDKYQTDKAERQANAAV
294329..294469                     pertussis toxin subunit; FOU27_01610                                                 N/A                 SalmonellaentericaMIFRDGFASHGNNRNLQQHIRDDSCASGSRDSTILRLSQILMSLII
294508..294807                     pertussis toxin subunit; FOU27_01615                                                 N/A                 SalmonellaentericaMYRYRIRADNSFYSLPPSVAYIELCGIQFGHFERVMMQLQSEYVSVNSIPIENIHEAVELVYERNASMVNIVGVDYEKEIKGSDSCSCVIIQCLLCSYG
294734..295113                     subtilase cytotoxin subunit B-like protein; FOU27_01620                              N/A                 SalmonellaentericaMKKKLKVLTLALASLSSVCYAAMADYDTYVSNVQIKNLSYGVYTSGDKETQFFCIELKRGSEAISVNAMCKVDVYGNHKQGGMGYIIKRMFGATPISKVHSLPGNLRLLVAHQVIVWGLCQIAA
295172..295267                     PHAGE_Entero_phiP27_NC_003356: putative holin; FOU27_01625; phage(gi18249892)        1.36e-08            SalmonellaentericaMSEPLSGSCMAVAICGATIFRLFTGADFGIVF
295492..295806                     PHAGE_Salmon_SEN8_NC_047753: hypothetical protein; FOU27_01630; phage(gi100026)      4.37e-53            SalmonellaentericaMLLLVRTLSEGDTLVVWKLDRLGHSMRHLVVLVEELRERGVNFHSLTDSSIDTSTPMGRFFFHVMGTLDEMERELIVERTRAGLEATRERGCNGGRRPKLTLEQ
complement(296034..296999)         peptide ABC transporter permease SapB; FOU27_01635                                   N/A                 SalmonellaentericaMIIFTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQGASLWNAWVFWFNGLLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALMVGIPVGMLAGVTRSKWPDRFISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFAIIDAWISDSPWRDEMVMSAIRHMVLPVLTLSVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLIHAIRQQDYAAISAGVMVIGSLVIVVNVISDILGAMANPLKHKEWYALR
complement(296996..298645)         peptide ABC transporter substrate-binding protein SapA; FOU27_01640                  N/A                 SalmonellaentericaMRLVLSSLIVIAGLLSSQATAATAPEQTASADIRDSGFVYCVSGQVNTFNPQKASSGLIVDTLAAQLYDRLLDVDPYTYRLVPELAESWEVLDNGATYRFHLRRDVSFQKTAWFTPTRKLNADDVVFTFQRIFDRRHPWHNINGSSFPYFDSLQFADNVKSVRKLDNNTVEFRLTQPDASFLWHLATHYASVMSAEYAAQLSRKDRQELLDRQPVGTGPFQLSEYRAGQFIRLQRHDGFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAASQLTILRDDPRLRLTLRPGMNIAYLAFNTDKPPLNNPAVRHALALSINNQRLMQSIYYGTAETAASILPRASWAYDNDAKITEYNPEKSREQLKALGIENLTLHLWVPTSSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMNHDLTLSGWATDSNDPDSFFRPLLSCAAINSQTNFAHWCNPEFDSVLRKALSSQQLASRIEAYEEAQNILEKELPILPLASSLRLQAYRYDIKGLVLSPFGNASFAGVSREKHEEVKKP
complement(298757..299737)         phage shock protein operon transcriptional activator; FOU27_01645                    N/A                 SalmonellaentericaMAEFKDNLLGEANRFLEVLEQVSRLAPLDKPVLIIGERGTGKELIANRLHYLSSRWQGPLISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVKEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELRLPLFPGFTDRAKETLLHYAWPGNVRELKNVVERSVYRHGSSEHPLDEIVIDPFQRHPAEPPAPALPSATATPDLPLKLREFQLQQEKALLQRSLQQAKFNQKRAADLLALTYHQFRALLKKHQL
307715..307728                     attR                                                                                 N/A                 GCCGCTTATGCCGC
