Submission Results

Sequence Name: Bacillus thuringiensis serovar israelensis ATCC 35646 sq1939, whole

GenBank Accession Number: AAJM01000001.1

GenInfo (GI) Number: 74494231

Download Results:

gi|00000000|ref|NC_000000| Bacillus thuringiensis serovar israelensis ATCC 35646 sq1939, whole .128761, gc%: 36.86%

Download summary as .txt file: summary.txt file_download

Total: 1 prophage regions have been identified, of which 0 regions are intact, 1 regions are incomplete, and 0 regions are questionable.

RegionRegion LengthCompletenessScore# Total ProteinsRegion PositionMost Common PhageGC %Details
135.6Kbincomplete4044665-36308 info_outlinePHAGE_Bacill_Blue_NC_031056(8)36.13%Show info_outline
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Region: The number assigned to the region.
Region Length: The length of the sequence of that region (in bp).
Completeness: A prediction of whether the region contains a intact or incomplete prophage based on the above criteria.
Score: The score of the region based on the above criteria.
# Total Proteins: The number of ORFs present in the region.
Region Position: The start and end positions of the region on the bacterial chromosome.
Most Common Phage: The phage(s) with the highest number of proteins most similar to those in the region.
GC %: The percentage of GC nucleotides of the region.

Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:

  1. If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
Method 2:
  1. If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
Method 3:
  1. If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
  2. If the size of the region is greater than 30 Kb, the score will be increased by 10.
  3. If there are at least 40 proteins in the region, the score will be increased by 10.
  4. If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
Compared the total score of method 2 with the total score of method 3, the bigger one is chosen as the total score of the region.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.

gi|00000000|ref|NC_000000| Bacillus thuringiensis serovar israelensis ATCC 35646 sq1939, whole [asmbl_id: NC_000000].128761, gc%: 36.86%

Download details as .txt file: detail.txt file_download

Hits against Virus and Prophage Database
Hits against Bacterial Database or GenBank File

Region 1, total 46 CDS

#CDS PositionBLAST HitE-ValueSequence
21942..2757PHAGE_Clostr_phiCT19406A_NC_030950: kilA anti-repressor protein; RBTH_07098; phage(gi100007)1.05e-23Showinfo_outline
32833..3444hypothetical protein; RBTH_070990.0Showinfo_outline
43688..3960hypothetical protein; RBTH_071000.0Showinfo_outline
53995..4621hypothetical protein; RBTH_071010.0Showinfo_outline
64634..4957PHAGE_Bacill_BCP8_2_NC_027355: hypothetical protein; RBTH_07102; phage(gi849253139)1.12e-28Showinfo_outline
74947..5165PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; RBTH_07103; phage(gi564292737)3.87e-11Showinfo_outline
85219..5419PHAGE_Bacill_Eldridge_NC_030920: virion structural protein; RBTH_07104; phage(gi100206)8.33e-08Showinfo_outline
95762..6196PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; RBTH_07105; phage(gi100196)3.56e-23Showinfo_outline
106539..6826hypothetical protein; RBTH_071070.0Showinfo_outline
116792..7316PHAGE_Lactob_Ldl1_NC_026609: nucleoside deoxyribosyltransferase; RBTH_07108; phage(gi764162121)4.95e-07Showinfo_outline
127367..7576hypothetical protein; RBTH_071090.0Showinfo_outline
137599..8426PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; RBTH_07110; phage(gi9630298)7.86e-145Showinfo_outline
148522..8728hypothetical protein; RBTH_071110.0Showinfo_outline
15complement(8767..9192)PHAGE_Bacill_Andromeda_NC_020478: hypothetical protein; RBTH_07112; phage(gi460042043)1.82e-11Showinfo_outline
16complement(9218..10021)PHAGE_Propio_Moyashi_NC_031003: hypothetical protein; RBTH_07113; phage(gi100036)5.07e-05Showinfo_outline
17complement(10039..10278)hypothetical protein; RBTH_071140.0Showinfo_outline
18complement(10266..10520)hypothetical protein; RBTH_071150.0Showinfo_outline
19complement(10524..10733)hypothetical protein; RBTH_094980.0Showinfo_outline
2010845..11297hypothetical protein; RBTH_071180.0Showinfo_outline
2111454..12140PHAGE_Bacill_0305phi8_36_NC_009760: hypothetical protein; RBTH_07119; phage(gi156564161)2.29e-20Showinfo_outline
2212391..13230PHAGE_Bacill_0305phi8_36_NC_009760: primase; RBTH_07120; phage(gi156564162)4.89e-48Showinfo_outline
2313422..14462PHAGE_Bacill_0305phi8_36_NC_009760: dnaB; RBTH_07121; phage(gi156564163)5.70e-88Showinfo_outline
2415190..15624PHAGE_Brevib_Sundance_NC_028749: putative aspartyl-tRNA amidotransferase subunit B; RBTH_07124; phage(gi971482624)7.51e-08Showinfo_outline
2515679..16155PHAGE_Bacill_SalinJah_NC_031034: nuclease; RBTH_07125; phage(gi100068)7.52e-33Showinfo_outline
2616312..16650PHAGE_Bacill_Kida_NC_031012: hypothetical protein; RBTH_07126; phage(gi100072)1.31e-08Showinfo_outline
2716853..18211PHAGE_Staphy_GH15_NC_019448: putative nicotinamide phosphoribosyl transferase; RBTH_07127; phage(gi418488115)0.0Showinfo_outline
2818570..19199hypothetical protein; RBTH_071280.0Showinfo_outline
2919330..19791PHAGE_Bacill_Grass_NC_022771: hypothetical protein; RBTH_07129; phage(gi568191791)6.42e-71Showinfo_outline
3020013..20606PHAGE_Bacill_Shanette_NC_028983: tellurium resistance protein TerE; RBTH_07132; phage(gi971763075)1.74e-38Showinfo_outline
3120655..21326PHAGE_Caulob_CcrColossus_NC_019406: putative TerD-like bacterial stress protein; RBTH_07133; phage(gi414088275)1.66e-11Showinfo_outline
3221666..22433PHAGE_Bacill_JL_NC_028982: YkoY family integral membrane protein; RBTH_07135; phage(gi971762832)1.07e-52Showinfo_outline
3322486..23523PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; RBTH_07136; phage(gi100100)2.16e-11Showinfo_outline
3423543..24268PHAGE_Bacill_CP_51_NC_025423: putative hydrolase; RBTH_07137; phage(gi725949599)6.44e-39Showinfo_outline
3524466..24999PHAGE_Bacill_G_NC_023719: gp212; RBTH_07138; phage(gi593777668)3.90e-19Showinfo_outline
3625085..26269Nucleoside permease nupC; RBTH_071390.0Showinfo_outline
3726482..27399PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; RBTH_07140; phage(gi100269)5.14e-74Showinfo_outline
3827529..28167PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; RBTH_07141; phage(gi31415763)4.83e-23Showinfo_outline
3928496..28882PHAGE_Brevib_Jenst_NC_028805: putative replication termination protein; RBTH_07142; phage(gi971744900)6.25e-18Showinfo_outline
41complement(29217..30323)PHAGE_Gordon_McGonagall_NC_030912: hypothetical protein; RBTH_07144; phage(gi100018)1.98e-13Showinfo_outline
4230490..30861PHAGE_Bacill_SPG24_NC_030903: hypothetical protein; RBTH_07145; phage(gi100023)3.36e-35Showinfo_outline
4330843..32927PHAGE_Bacill_G_NC_023719: gp82; RBTH_07146; phage(gi593777550)0.0Showinfo_outline
4432946..33974PHAGE_Bacill_G_NC_023719: gp83; RBTH_07147; phage(gi593777551)2.18e-137Showinfo_outline
4534007..34258PHAGE_Bacill_Grass_NC_022771: thioredoxin; RBTH_07148; phage(gi568191698)3.36e-10Showinfo_outline
4635547..36308PHAGE_Bacill_Bcp1_NC_024137: putative nucleotidyltransferase; RBTH_07153; phage(gi640884005)2.28e-111Showinfo_outline
Bacillus thuringiensis serovar israelensis ATCC 35646 sq1939, whole
Click on a region to see details.
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)

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Length: 128761 bps
Phages: 1
Click on a region in the genome above to show details here.
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Click on a sequence to see details.
Portal Protein
Coat Protein
Tail Shaft
Attachment Site
Phage-like Protein
Hypotheical Protein
Fiber Protein
Plate Protein

Download data as .txt file: png_input file_download